Lcy05g008960 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g008960
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Xyloglucan galactosyltransferase KATAMARI1-like protein
Location	Chr05: 9063611 .. 9064121 (-)
RNA-Seq Expression	Lcy05g008960
Synteny	Lcy05g008960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGAAATGGAGGCAGGAGGCGAGGACGGGGCGTTCGAGCGAGTGAGGTTGGGAGGCCGAAACAGAGGAGCTTCAATGTCAGTCAGCCATGGATGTGAAGGTAAATTGCAAAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAGGGTGTGAACAATTCAACATTGAATGGAAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGCTTCTTCTTTGGAGATATTGAACCAAAATCACATCAAAATAACAGATCAGTGCATCAATATCCCAAGCTATGGCAATGGAGTTTGATGCTTCTTGTTCTTGTTGTACTTCTCTTTCTGTTGGTTTTAGAGATGAGAATGTTTCATTCTTAGATTCTTCTTTTGATTTGGTTTCAAGCTAATAGGAATGCCATTGGATGGAAATATCATGGTTCATTGTGATCTCTCCACTGTCCTTGTTGGTTCATATATGATATTGTTTTTAGATTTCTTAATCTTGAAAATGAAGTTCATTTACAC

mRNA sequence

AGGAGAAATGGAGGCAGGAGGCGAGGACGGGGCGTTCGAGCGAGTGAGGTTGGGAGGCCGAAACAGAGGAGCTTCAATGTCAGTCAGCCATGGATGTGAAGGTAAATTGCAAAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAGGGTGTGAACAATTCAACATTGAATGGAAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGCTTCTTCTTTGGAGATATTGAACCAAAATCACATCAAAATAACAGATCAGTGCATCAATATCCCAAGCTATGGCAATGGAGTTTGATGCTTCTTGTTCTTGTTGTACTTCTCTTTCTGTTGGTTTTAGAGATGAGAATGTTTCATTCTTAGATTCTTCTTTTGATTTGGTTTCAAGCTAATAGGAATGCCATTGGATGGAAATATCATGGTTCATTGTGATCTCTCCACTGTCCTTGTTGGTTCATATATGATATTGTTTTTAGATTTCTTAATCTTGAAAATGAAGTTCATTTACAC

Coding sequence (CDS)

ATGGAGGCAGGAGGCGAGGACGGGGCGTTCGAGCGAGTGAGGTTGGGAGGCCGAAACAGAGGAGCTTCAATGTCAGTCAGCCATGGATGTGAAGGTAAATTGCAAAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAGGGTGTGAACAATTCAACATTGAATGGAAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGCTTCTTCTTTGGAGATATTGAACCAAAATCACATCAAAATAACAGATCAGTGCATCAATATCCCAAGCTATGGCAATGGAGTTTGATGCTTCTTGTTCTTGTTGTACTTCTCTTTCTGTTGGTTTTAGAGATGAGAATGTTTCATTCTTAG

Protein sequence

MEAGGEDGAFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGVCFFFGDIEPKSHQNNRSVHQYPKLWQWSLMLLVLVVLLFLLVLEMRMFHS

Homology

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BLAST of Lcy05g008960 vs. ExPASy TrEMBL
Match: A0A0A0KBZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 87/123 (70.73%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MEAGGEDGAFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSE 60
           MEA  E+ A E VRL G N GASMSVSHG E KL NCCCINIYVNSNIQGVNNSTLNG E
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVCFFFGDIEPKSHQN-NRSVHQYPKLWQWSLMLLVLVV----LLFLLVLEMRM 119
           VKMGSPGV F FGD+EPK HQN   S+HQ PKLWQW LM+L+L+     LLF+L+LE++M
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

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BLAST of Lcy05g008960 vs. ExPASy TrEMBL
Match: A0A5A7T8V9 (Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001550 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.0e-23
Identity = 60/73 (82.19%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MEAGGEDGAFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSE 60
          MEA GED A ER+RL G N GASMSVSHG E KL NCCCINIYVNSNIQGVNNSTLNG E
Sbjct: 1  MEARGEDEAPERLRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61 VKMGSPGVCFFFG 74
          VKMGSPGV F FG
Sbjct: 61 VKMGSPGVFFLFG 73

[Close]

BLAST of Lcy05g008960 vs. ExPASy TrEMBL
Match: A0A059A2V7 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01423 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 9   AFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGV 68
           +F+ V+L     GA+M V  GC G+ ++ CC+NIY+NSN+QGV+NS L GS+V+MG PGV
Sbjct: 9   SFDHVKLEEMGFGAAMFVHRGCTGESKDNCCVNIYINSNVQGVSNSILVGSDVRMGDPGV 68

Query: 69  CFFFGDIEPKSHQNNRSVHQYPKLWQWSLMLLVLVVLLFLLVL 112
             +FGD++P +    R  HQ  K W++ L   V+ +L+F L+L
Sbjct: 69  SLYFGDVKPTNAHKKRGRHQRIK-WRFGLGSFVVSLLVFALLL 110

[Close]

BLAST of Lcy05g008960 vs. ExPASy TrEMBL
Match: A0A4V3WKN2 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_013709 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 8   GAFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPG 67
           G+FERV L G+N GA+M    G  G+  NCC INIY+N+NIQGVNNS L GSEVKMG PG
Sbjct: 33  GSFERVNLEGKNVGAAMINRRGTSGESPNCCNINIYINNNIQGVNNSVLVGSEVKMGDPG 92

Query: 68  VCFFFGDI-------EPKSHQNNRSVHQYPKLWQWSLMLLVLVVLLFLL 110
           VC    D+       EPK   +N   +          MLL++ + +FLL
Sbjct: 93  VCLSLSDVKLGKAFLEPKKKSSNLGFYG---------MLLLVAIAIFLL 132

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BLAST of Lcy05g008960 vs. ExPASy TrEMBL
Match: A0A5N5NR97 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_003635 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-14
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MEAGGEDGAFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSE 60
          M A    G+F+RV L GRN GA+M+V HG   + Q+  CINI++N+N+QGVNNS L GSE
Sbjct: 1  MAAESSHGSFDRVNLKGRNVGAAMTVRHGGRDEPQDSYCINIFINNNVQGVNNSILLGSE 60

Query: 61 VKMGSPGVCFFFGDIEPKSHQNNRS 86
          V M  PGV  F  D++ KS +N R+
Sbjct: 61 VSMRDPGVSLFLEDMKLKSKKNRRN 85

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BLAST of Lcy05g008960 vs. NCBI nr
Match: KGN46369.1 (hypothetical protein Csa_004893 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 3.7e-36
Identity = 87/123 (70.73%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MEAGGEDGAFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSE 60
           MEA  E+ A E VRL G N GASMSVSHG E KL NCCCINIYVNSNIQGVNNSTLNG E
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVCFFFGDIEPKSHQN-NRSVHQYPKLWQWSLMLLVLVV----LLFLLVLEMRM 119
           VKMGSPGV F FGD+EPK HQN   S+HQ PKLWQW LM+L+L+     LLF+L+LE++M
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

[Close]

BLAST of Lcy05g008960 vs. NCBI nr
Match: KAA0039894.1 (xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa] >TYK24608.1 xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-22
Identity = 60/73 (82.19%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MEAGGEDGAFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSE 60
          MEA GED A ER+RL G N GASMSVSHG E KL NCCCINIYVNSNIQGVNNSTLNG E
Sbjct: 1  MEARGEDEAPERLRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61 VKMGSPGVCFFFG 74
          VKMGSPGV F FG
Sbjct: 61 VKMGSPGVFFLFG 73

[Close]

BLAST of Lcy05g008960 vs. NCBI nr
Match: KAG6592845.1 (hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-20
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MEAGGED--GAFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNG 60
          ME G ED  GAFERVRLGGRN GASMSVSHG EGKL NCCCINIYVNSNIQGVNNSTLNG
Sbjct: 1  MEVGDEDGVGAFERVRLGGRNIGASMSVSHGSEGKLPNCCCINIYVNSNIQGVNNSTLNG 60

Query: 61 SEV 62
          SE+
Sbjct: 61 SEI 63

[Close]

BLAST of Lcy05g008960 vs. NCBI nr
Match: KCW47685.1 (hypothetical protein EUGRSUZ_K01423 [Eucalyptus grandis])

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-15
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 9   AFERVRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGV 68
           +F+ V+L     GA+M V  GC G+ ++ CC+NIY+NSN+QGV+NS L GS+V+MG PGV
Sbjct: 9   SFDHVKLEEMGFGAAMFVHRGCTGESKDNCCVNIYINSNVQGVSNSILVGSDVRMGDPGV 68

Query: 69  CFFFGDIEPKSHQNNRSVHQYPKLWQWSLMLLVLVVLLFLLVL 112
             +FGD++P +    R  HQ  K W++ L   V+ +L+F L+L
Sbjct: 69  SLYFGDVKPTNAHKKRGRHQRIK-WRFGLGSFVVSLLVFALLL 110

[Close]

BLAST of Lcy05g008960 vs. NCBI nr
Match: KAF5482499.1 (hypothetical protein F2P56_003063 [Juglans regia])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-14
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 8  GAFERVRLGGRNRGASMSV-SHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSEVKMGSP 67
          G+FERV L GRN GA+M V S    G+  +CCCINIY+N+NIQG+NNS L+GSEVK+  P
Sbjct: 8  GSFERVNLKGRNIGAAMFVPSSDTRGESHDCCCINIYINNNIQGINNSILHGSEVKLRDP 67

Query: 68 GVCFFFGDIE-PKSHQNNR 85
          GV  FFG+++  +  Q N+
Sbjct: 68 GVSLFFGEVKLDRGSQTNK 86

[Close]

BLAST of Lcy05g008960 vs. TAIR 10
Match: AT2G20362.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-07
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 13 VRLGGRNRGASMSVSHGCEGKLQNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGVCFFF 72
          + L GRN GA M      +   Q+ C INIYVNSN+Q    S L GS+VK+  PGV    
Sbjct: 17 INLNGRNVGAVMVAPRDVDIASQSGCRINIYVNSNVQATCGSALIGSKVKLRDPGVHLHI 76

Query: 73 GDIE 77
           D++
Sbjct: 77 DDVK 80

The following BLAST results are available for this feature:

BLAST of Lcy05g008960 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g008960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ5	1.8e-36	70.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1	[more]
A0A5A7T8V9	5.0e-23	82.19	Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. mak...	[more]
A0A059A2V7	1.0e-15	45.63	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01423 PE=4 SV...	[more]
A0A4V3WKN2	6.6e-15	47.71	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0137...	[more]
A0A5N5NR97	2.5e-14	51.76	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_003635 PE=4 SV=1	[more]

BLAST of Lcy05g008960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46369.1	3.7e-36	70.73	hypothetical protein Csa_004893 [Cucumis sativus]	[more]
KAA0039894.1	1.0e-22	82.19	xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuw...	[more]
KAG6592845.1	3.7e-20	87.30	hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KCW47685.1	2.1e-15	45.63	hypothetical protein EUGRSUZ_K01423 [Eucalyptus grandis]	[more]
KAF5482499.1	1.4e-14	55.70	hypothetical protein F2P56_003063 [Juglans regia]	[more]

BLAST of Lcy05g008960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20362.1	2.9e-07	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472:SF9	OXIDOREDUCTASES, ACTING ON NADH OR NADPH-RELATED	coord: 5..86
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 5..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g008960.1	Lcy05g008960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity