Lcy05g008230 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g008230
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	proton pump-interactor BIP103-like isoform X1
Location	Chr05: 8282682 .. 8283122 (+)
RNA-Seq Expression	Lcy05g008230
Synteny	Lcy05g008230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCGAACTACCGTCGGTATAAGAAAACCGATGAAGACGTCGCTCGTAAACAAGCCATTCTCAAAGACATAAACCAACATGAAGTAGCTAGGGAGAGAGCTATTGCTGATGCTGTGGTGAATGGAAAATTGTGGAACTCCTTAGGTTCAAAAAATGCCATTCAAGCAGAAGTAAGAACCAAACAAAGAATATGTAGGAGTTTTGTTACATTAAACTGTTTGACTTGTAAATTAAAAGTTGTAAAATTTGTTTTTGTGTATGAAAAGTTGCAGGCACTCACCAATAGTTCAGATGAGCTAAGGGAAAAGCAGGTGAAAGCAAAGGCCAAACTTAGGAAGGTTGAAAAGAAGATAAGTGCTTTAGAGAAGTGCTTAAAAGATATGAATTGCAAAAAGGGTAAGGCTTATAACACCATTGTTAAACTGAAGAAGCATTAG

mRNA sequence

ATGAACTCGAACTACCGTCGGTATAAGAAAACCGATGAAGACGTCGCTCGTAAACAAGCCATTCTCAAAGACATAAACCAACATGAAGTAGCTAGGGAGAGAGCTATTGCTGATGCTGTGGTGAATGGAAAATTGTGGAACTCCTTAGGTTCAAAAAATGCCATTCAAGCAGAAGCACTCACCAATAGTTCAGATGAGCTAAGGGAAAAGCAGGTGAAAGCAAAGGCCAAACTTAGGAAGGTTGAAAAGAAGATAAGTGCTTTAGAGAAGTGCTTAAAAGATATGAATTGCAAAAAGGGTAAGGCTTATAACACCATTGTTAAACTGAAGAAGCATTAG

Coding sequence (CDS)

ATGAACTCGAACTACCGTCGGTATAAGAAAACCGATGAAGACGTCGCTCGTAAACAAGCCATTCTCAAAGACATAAACCAACATGAAGTAGCTAGGGAGAGAGCTATTGCTGATGCTGTGGTGAATGGAAAATTGTGGAACTCCTTAGGTTCAAAAAATGCCATTCAAGCAGAAGCACTCACCAATAGTTCAGATGAGCTAAGGGAAAAGCAGGTGAAAGCAAAGGCCAAACTTAGGAAGGTTGAAAAGAAGATAAGTGCTTTAGAGAAGTGCTTAAAAGATATGAATTGCAAAAAGGGTAAGGCTTATAACACCATTGTTAAACTGAAGAAGCATTAG

Protein sequence

MNSNYRRYKKTDEDVARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAEALTNSSDELREKQVKAKAKLRKVEKKISALEKCLKDMNCKKGKAYNTIVKLKKH

Homology

[Close]

BLAST of Lcy05g008230 vs. ExPASy TrEMBL
Match: A0A6J1DMY3 (uncharacterized protein LOC111022580 OS=Momordica charantia OX=3673 GN=LOC111022580 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.5e-27
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 9   KKTDEDVARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAE--ALTNSSDE 68
           +K+D+DVARKQAILKDI QHE+ARERAIADAVVNGK WNSLG K AIQAE  AL  SS+E
Sbjct: 45  QKSDDDVARKQAILKDIKQHEIARERAIADAVVNGKFWNSLGLKKAIQAELQALNTSSNE 104

Query: 69  LREKQVKAKAKLRKVEKKISALEKCLKDMNCKKGKAYNTIVKLKK 112
            R   VKA AK+RKVEK IS+LEK LKD N KK +AYNTI++LKK
Sbjct: 105 QR---VKAMAKIRKVEKNISSLEKRLKDTNRKKSEAYNTILRLKK 146

[Close]

BLAST of Lcy05g008230 vs. ExPASy TrEMBL
Match: A0A6J1DPC7 (proton pump-interactor 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022582 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 71/115 (61.74%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 4   NYRRYKKTDEDVARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAEALTNS 63
           NY  YKKTD+D+AR++AILKDI QHE+ARER IADAVVNGKLWNSLGSK AIQAE L   
Sbjct: 201 NYWGYKKTDDDLAREKAILKDIKQHELARERTIADAVVNGKLWNSLGSKKAIQAEVLNKR 260

Query: 64  SDELREKQVKAKAKLRKVEKKISALEKCL-------KDMNCKKGKAYNTIVKLKK 112
            D LRE+QV+   K+RKV+K++  +EK +       KD N KK +AY+TI++LKK
Sbjct: 261 LDGLREEQVQVNGKIRKVKKELERVEKDICSLQQRFKDANRKKDEAYDTILRLKK 315

[Close]

BLAST of Lcy05g008230 vs. ExPASy TrEMBL
Match: A0A6J1DRN4 (proton pump-interactor 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022582 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.3e-24
Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 4   NYRRYKKTDEDVARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAE--ALT 63
           NY  YKKTD+D+AR++AILKDI QHE+ARER IADAVVNGKLWNSLGSK AIQAE   L 
Sbjct: 201 NYWGYKKTDDDLAREKAILKDIKQHELARERTIADAVVNGKLWNSLGSKKAIQAEVQVLN 260

Query: 64  NSSDELREKQVKAKAKLRKVEKKISALEKCL-------KDMNCKKGKAYNTIVKLKK 112
              D LRE+QV+   K+RKV+K++  +EK +       KD N KK +AY+TI++LKK
Sbjct: 261 KRLDGLREEQVQVNGKIRKVKKELERVEKDICSLQQRFKDANRKKDEAYDTILRLKK 317

[Close]

BLAST of Lcy05g008230 vs. ExPASy TrEMBL
Match: A0A6J1DME1 (proton pump-interactor BIP103-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022559 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 4   NYRRYKKTDED-VARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAE--AL 63
           NY +Y+KT  D +AR++AILKDI QH++ARE AIA+AVVNGKLWNSLGS+ AIQAE   L
Sbjct: 194 NYWQYEKTSNDYIAREKAILKDIKQHKIAREIAIANAVVNGKLWNSLGSQEAIQAELQEL 253

Query: 64  TNSSDELREKQVKAKAK-------LRKVEKKISALEKCLKDMNCKKGKAYNTIVKLKK 112
             +SDELRE Q++  AK       L+KVEK IS+L+KCL D N K   AYNTI+KLKK
Sbjct: 254 DYNSDELREDQIRVNAKIKKVKKELKKVEKDISSLQKCLNDTNRKNAAAYNTILKLKK 311

[Close]

BLAST of Lcy05g008230 vs. ExPASy TrEMBL
Match: A0A6J1DRL6 (proton pump-interactor BIP103-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022559 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 4   NYRRYKKTDED-VARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAE--AL 63
           NY +Y+KT  D +AR++AILKDI QH++ARE AIA+AVVNGKLWNSLGS+ AIQAE   L
Sbjct: 141 NYWQYEKTSNDYIAREKAILKDIKQHKIAREIAIANAVVNGKLWNSLGSQEAIQAELQEL 200

Query: 64  TNSSDELREKQVKAKAK-------LRKVEKKISALEKCLKDMNCKKGKAYNTIVKLKK 112
             +SDELRE Q++  AK       L+KVEK IS+L+KCL D N K   AYNTI+KLKK
Sbjct: 201 DYNSDELREDQIRVNAKIKKVKKELKKVEKDISSLQKCLNDTNRKNAAAYNTILKLKK 258

[Close]

BLAST of Lcy05g008230 vs. NCBI nr
Match: XP_022155433.1 (uncharacterized protein LOC111022580 [Momordica charantia] >XP_022155434.1 uncharacterized protein LOC111022580 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 9   KKTDEDVARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAE--ALTNSSDE 68
           +K+D+DVARKQAILKDI QHE+ARERAIADAVVNGK WNSLG K AIQAE  AL  SS+E
Sbjct: 45  QKSDDDVARKQAILKDIKQHEIARERAIADAVVNGKFWNSLGLKKAIQAELQALNTSSNE 104

Query: 69  LREKQVKAKAKLRKVEKKISALEKCLKDMNCKKGKAYNTIVKLKK 112
            R   VKA AK+RKVEK IS+LEK LKD N KK +AYNTI++LKK
Sbjct: 105 QR---VKAMAKIRKVEKNISSLEKRLKDTNRKKSEAYNTILRLKK 146

[Close]

BLAST of Lcy05g008230 vs. NCBI nr
Match: XP_022155437.1 (proton pump-interactor 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 71/115 (61.74%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 4   NYRRYKKTDEDVARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAEALTNS 63
           NY  YKKTD+D+AR++AILKDI QHE+ARER IADAVVNGKLWNSLGSK AIQAE L   
Sbjct: 201 NYWGYKKTDDDLAREKAILKDIKQHELARERTIADAVVNGKLWNSLGSKKAIQAEVLNKR 260

Query: 64  SDELREKQVKAKAKLRKVEKKISALEKCL-------KDMNCKKGKAYNTIVKLKK 112
            D LRE+QV+   K+RKV+K++  +EK +       KD N KK +AY+TI++LKK
Sbjct: 261 LDGLREEQVQVNGKIRKVKKELERVEKDICSLQQRFKDANRKKDEAYDTILRLKK 315

[Close]

BLAST of Lcy05g008230 vs. NCBI nr
Match: XP_022155436.1 (proton pump-interactor 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 8.9e-24
Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 4   NYRRYKKTDEDVARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAE--ALT 63
           NY  YKKTD+D+AR++AILKDI QHE+ARER IADAVVNGKLWNSLGSK AIQAE   L 
Sbjct: 201 NYWGYKKTDDDLAREKAILKDIKQHELARERTIADAVVNGKLWNSLGSKKAIQAEVQVLN 260

Query: 64  NSSDELREKQVKAKAKLRKVEKKISALEKCL-------KDMNCKKGKAYNTIVKLKK 112
              D LRE+QV+   K+RKV+K++  +EK +       KD N KK +AY+TI++LKK
Sbjct: 261 KRLDGLREEQVQVNGKIRKVKKELERVEKDICSLQQRFKDANRKKDEAYDTILRLKK 317

[Close]

BLAST of Lcy05g008230 vs. NCBI nr
Match: XP_022155411.1 (proton pump-interactor BIP103-like isoform X2 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 4   NYRRYKKTDED-VARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAE--AL 63
           NY +Y+KT  D +AR++AILKDI QH++ARE AIA+AVVNGKLWNSLGS+ AIQAE   L
Sbjct: 141 NYWQYEKTSNDYIAREKAILKDIKQHKIAREIAIANAVVNGKLWNSLGSQEAIQAELQEL 200

Query: 64  TNSSDELREKQVKAKAK-------LRKVEKKISALEKCLKDMNCKKGKAYNTIVKLKK 112
             +SDELRE Q++  AK       L+KVEK IS+L+KCL D N K   AYNTI+KLKK
Sbjct: 201 DYNSDELREDQIRVNAKIKKVKKELKKVEKDISSLQKCLNDTNRKNAAAYNTILKLKK 258

[Close]

BLAST of Lcy05g008230 vs. NCBI nr
Match: XP_022155410.1 (proton pump-interactor BIP103-like isoform X1 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 4   NYRRYKKTDED-VARKQAILKDINQHEVARERAIADAVVNGKLWNSLGSKNAIQAE--AL 63
           NY +Y+KT  D +AR++AILKDI QH++ARE AIA+AVVNGKLWNSLGS+ AIQAE   L
Sbjct: 194 NYWQYEKTSNDYIAREKAILKDIKQHKIAREIAIANAVVNGKLWNSLGSQEAIQAELQEL 253

Query: 64  TNSSDELREKQVKAKAK-------LRKVEKKISALEKCLKDMNCKKGKAYNTIVKLKK 112
             +SDELRE Q++  AK       L+KVEK IS+L+KCL D N K   AYNTI+KLKK
Sbjct: 254 DYNSDELREDQIRVNAKIKKVKKELKKVEKDISSLQKCLNDTNRKNAAAYNTILKLKK 311

The following BLAST results are available for this feature:

BLAST of Lcy05g008230 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g008230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMY3	5.5e-27	73.33	uncharacterized protein LOC111022580 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DPC7	1.3e-25	61.74	proton pump-interactor 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1DRN4	4.3e-24	60.68	proton pump-interactor 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1DME1	5.6e-24	61.86	proton pump-interactor BIP103-like isoform X1 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1DRL6	5.6e-24	61.86	proton pump-interactor BIP103-like isoform X2 OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Lcy05g008230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155433.1	1.1e-26	73.33	uncharacterized protein LOC111022580 [Momordica charantia] >XP_022155434.1 uncha...	[more]
XP_022155437.1	2.8e-25	61.74	proton pump-interactor 1-like isoform X2 [Momordica charantia]	[more]
XP_022155436.1	8.9e-24	60.68	proton pump-interactor 1-like isoform X1 [Momordica charantia]	[more]
XP_022155411.1	1.2e-23	61.86	proton pump-interactor BIP103-like isoform X2 [Momordica charantia]	[more]
XP_022155410.1	1.2e-23	61.86	proton pump-interactor BIP103-like isoform X1 [Momordica charantia]	[more]

BLAST of Lcy05g008230 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..98
None	No IPR available	PANTHER	PTHR32219:SF16	SUBFAMILY NOT NAMED	coord: 12..111
None	No IPR available	PANTHER	PTHR32219	RNA-BINDING PROTEIN YLMH-RELATED	coord: 12..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g008230.1	Lcy05g008230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010155	regulation of proton transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005886	plasma membrane