Lcy05g007810 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g007810
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 7676063 .. 7677132 (+)
RNA-Seq ExpressionLcy05g007810
SyntenyLcy05g007810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCTGGCGGGTGATTTTGGAAATGGACTCGAAGAGGGTTTACCAGTTGCTTAGGGAGGAGCGCGAGGAGCTGTCTGATTTGGGATGCTTGATTAATGACTCCTTGATGGATTTGCCGGTAGGTTGGCAGGTGTGTTACAGCTTCACAAAGCGAGAAGGAAATAAGGTGGCGCATCGATTAGCAAAGCTAGCGGTAGAATATGAATGTGAGTTTGTGTGGCTAGAAACTTTTCCTCAGTATGTTGAGGACTTGATTTTTGCTGATATTTTTTCTTTGTACTGTATTTTGATGGGAATGCTATGAGGTTTAAAAAAAAAAAACAAAAAAAAAAACTAACATAAAATTTGTACGCTCGACCGAGAGGTCGAAGACTCGAATCCTCACCCCACATATATGTTGAACTAAAAAAAAGTTTTTTACTTTCATTATTTAGTTCCATCTTTGTATTTCTCTCCCTCTTCTTTTCAATTTTTTTTCTTTCTATACTCTCTCACTCAGGGTGGATGCAGAAAAATATAGTTTTGGAGGATCTAATTTAAGTTTGAGGTTAGTTTCAGAATTATGATTTGCACAAATTTTTGCCTCTCATTTTTGTTGTTTTTCTAAATTTAAGGCTCGATTACTATTTGGTTTTTGAAAATTAAATCTATAAACACTACTACTACATATTAGTTTATTTGTTTTATTATCTACCATCCTTCCATGTTTTAAAAAACCAAGTCAAATTTTAAAAACTAAAAGGAGTAGTTTTCAAAAACTTATTTTTATGTTTTTGAAAAATTTGGCTAAGAATTTAAGTGTGTGCTTAACAAAGATGGAAACTATAGTAAGAAAATTAGGAGAAAACAAGCATAATTTTCAAAAACCAAAAACCAAAAATCAAATGATTATTAAACGGGCCTAAAATTTCAATTTTTAATTAAGTTGTGATGTTGTTTTCCAAATTTTCTCTCATGATTATTCATTAGTTTGGATTTAAATATTAATGGAGATATCCTGATATGATGTAATCTTAATTTATTTTAGATACTAGATTTCAAATGAGGGGTATTTTAGTCCCATAA

mRNA sequence

ATGGGTTTCTGGCGGGTGATTTTGGAAATGGACTCGAAGAGGGTTTACCAGTTGCTTAGGGAGGAGCGCGAGGAGCTGTCTGATTTGGGATGCTTGATTAATGACTCCTTGATGGATTTGCCGGTAGGTTGGCAGGTGTGTTACAGCTTCACAAAGCGAGAAGGAAATAAGGTGGCGCATCGATTAGCAAAGCTAGCGGTAGAATATGAATATACTAGATTTCAAATGAGGGGTATTTTAGTCCCATAA

Coding sequence (CDS)

ATGGGTTTCTGGCGGGTGATTTTGGAAATGGACTCGAAGAGGGTTTACCAGTTGCTTAGGGAGGAGCGCGAGGAGCTGTCTGATTTGGGATGCTTGATTAATGACTCCTTGATGGATTTGCCGGTAGGTTGGCAGGTGTGTTACAGCTTCACAAAGCGAGAAGGAAATAAGGTGGCGCATCGATTAGCAAAGCTAGCGGTAGAATATGAATATACTAGATTTCAAATGAGGGGTATTTTAGTCCCATAA

Protein sequence

MGFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVCYSFTKREGNKVAHRLAKLAVEYEYTRFQMRGILVP
Homology
BLAST of Lcy05g007810 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 2   GFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVCYSFTKREGNKVAHR 61
           G   ++LE DS R+Y L   ++E LS  G +I      L    QV YSFTKR GN +AH 
Sbjct: 160 GISPILLETDSLRIYNLFARDKEGLSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHL 219

Query: 62  LAKLAVE 69
           LA+ A++
Sbjct: 220 LARRALQ 226

BLAST of Lcy05g007810 vs. ExPASy TrEMBL
Match: A0A803KQ76 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.6e-05
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 2   GFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVC-YSFTKREGNKVAH 61
           GF RV +E +  ++Y  L + R   ++LG +++D ++ L  G   C +SF KR GN+VAH
Sbjct: 37  GFSRVCIETECLKLYSHLSKHRVPPTELGSIVSD-ILQLARGCLSCSFSFVKRSGNRVAH 96

Query: 62  RLAKLAVEYEYTRFQMRGI 80
            LAKL   +E  R  M  +
Sbjct: 97  ELAKLCSSFESLRVWMEEV 114

BLAST of Lcy05g007810 vs. ExPASy TrEMBL
Match: A0A7N2MU32 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.2e-04
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 1   MGFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQ-VCYSFTKREGNKVA 60
           +GF R+ILE DS  V Q L E  E L+  G L+ D +  L   +  + YS TKR+GN VA
Sbjct: 674 LGFQRLILEGDSLEVIQALLERTETLTPTGLLLED-VRSLSQNFDLLLYSHTKRDGNAVA 733

Query: 61  HRLAKLAV 68
           H LAK A+
Sbjct: 734 HSLAKYAL 740

BLAST of Lcy05g007810 vs. ExPASy TrEMBL
Match: A0A803MT76 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-04
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 2   GFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVC-YSFTKREGNKVAH 61
           GF +V LE D  R+Y  L +     +  G ++ND ++ L   W  C +SF KR GN VAH
Sbjct: 93  GFRKVCLETDCIRLYSHLSKGYAPHTAFGLVVND-ILHLARRWVSCSFSFVKRSGNCVAH 152

Query: 62  RLAKLAVEYEYTRFQMRGI 80
           +LAKL++ +   R  M  +
Sbjct: 153 KLAKLSLSFHDLRVWMEEV 170

BLAST of Lcy05g007810 vs. ExPASy TrEMBL
Match: A0A6P9DX22 (uncharacterized protein LOC108984867 OS=Juglans regia OX=51240 GN=LOC108984867 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-04
Identity = 28/67 (41.79%), Postives = 37/67 (55.22%), Query Frame = 0

Query: 1   MGFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVCYSFTKREGNKVAH 60
           +GFW V LE D+K V   +  E ++ S  G +I D    L         FT REGN+VAH
Sbjct: 173 LGFWEVWLEGDAKEVIDAVNREEDDDSRFGHVIEDLKQSLRQSSAWRAVFTHREGNEVAH 232

Query: 61  RLAKLAV 68
            LAK+A+
Sbjct: 233 HLAKIAL 239

BLAST of Lcy05g007810 vs. NCBI nr
Match: XP_010681975.1 (PREDICTED: uncharacterized protein LOC104896887 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 2  GFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVCYSFTKREGNKVAHR 61
          GF  ++LEMD+  VY  L+  ++E S LG +++D        + V +SF KREGN VAH 
Sbjct: 22 GFSSLVLEMDNFTVYSKLQRRKQEASTLGSILHDIHRLANQCFNVSFSFVKREGNGVAHA 81

Query: 62 LAKLAVEYEYTR 74
          LAKL+ ++E  R
Sbjct: 82 LAKLSCKFEGLR 93

BLAST of Lcy05g007810 vs. NCBI nr
Match: XP_010685083.1 (PREDICTED: uncharacterized protein LOC104899564 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 2   GFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVCYSFTKREGNKVAHR 61
           GF  +++EMD+  VY  L + R+E S LG +++D  +       V +SF KREGN VAH 
Sbjct: 37  GFTSLVIEMDNLSVYSKLMKRRQETSTLGSILHDIHVLASQYLCVSFSFVKREGNGVAHV 96

Query: 62  LAKLAVEYEYTR 74
           LAKL+  +E  R
Sbjct: 97  LAKLSCNFEGLR 108

BLAST of Lcy05g007810 vs. NCBI nr
Match: XP_042962456.1 (uncharacterized protein LOC122296723 [Carya illinoinensis])

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-05
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 1   MGFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVCYSFTKREGNKVAH 60
           +G  RV+ E D+K + Q +  + E  +D G L+ND+   L    Q    F  RE N  AH
Sbjct: 32  LGLGRVVFEGDAKIIVQAVTSDEEISADYGVLVNDARSMLRTWPQWHVDFVHREANYAAH 91

Query: 61  RLAKLAVEYEYTR 74
           +LAKLA++YEY +
Sbjct: 92  QLAKLALDYEYEK 104

BLAST of Lcy05g007810 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-05
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 2   GFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVCYSFTKREGNKVAHR 61
           G   ++LE DS R+Y L   ++E LS  G +I      L    QV YSFTKR GN +AH 
Sbjct: 160 GISPILLETDSLRIYNLFARDKEGLSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHL 219

Query: 62  LAKLAVE 69
           LA+ A++
Sbjct: 220 LARRALQ 226

BLAST of Lcy05g007810 vs. NCBI nr
Match: XP_042939525.1 (uncharacterized protein LOC122274565 [Carya illinoinensis])

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-05
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 1   MGFWRVILEMDSKRVYQLLREEREELSDLGCLINDSLMDLPVGWQVCYSFTKREGNKVAH 60
           +G  R++ E D++ + Q +  + E  +D G L+ND+   L    Q   +F  RE N  AH
Sbjct: 376 LGLGRMVFEGDAQIIVQAVTSDEEISADYGVLVNDARSMLRTWTQWHVAFVHREANYAAH 435

Query: 61  RLAKLAVEYEYTRFQM 77
           +LAKLA++YEY +  M
Sbjct: 436 QLAKLALDYEYEKIWM 451

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CDQ42.5e-0543.28uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A803KQ769.6e-0537.97Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A7N2MU326.2e-0447.06Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A803MT768.1e-0437.97Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A6P9DX228.1e-0441.79uncharacterized protein LOC108984867 OS=Juglans regia OX=51240 GN=LOC108984867 P... [more]
Match NameE-valueIdentityDescription
XP_010681975.16.1e-0643.06PREDICTED: uncharacterized protein LOC104896887 [Beta vulgaris subsp. vulgaris][more]
XP_010685083.11.8e-0543.06PREDICTED: uncharacterized protein LOC104899564 [Beta vulgaris subsp. vulgaris][more]
XP_042962456.15.2e-0539.73uncharacterized protein LOC122296723 [Carya illinoinensis][more]
XP_022139684.15.2e-0543.28uncharacterized protein LOC111010533 [Momordica charantia][more]
XP_042939525.16.8e-0536.84uncharacterized protein LOC122274565 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..66
e-value: 2.0E-9
score: 37.3
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g007810.1Lcy05g007810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity