Lcy05g007090 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g007090
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S19
LocationChr05: 6831871 .. 6833961 (-)
RNA-Seq ExpressionLcy05g007090
SyntenyLcy05g007090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGAAAGGCGGAAACCCTAGTTCTGCGATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCATGAGTTCGTGAAGGCCTATGCCGCTCATCTCAAGAGATCCGGAAAGGTATCCATTTTGTTCATCTTTTTTCTGTTTTGGTGGCTGAGAGAACGTGATTTTCGATCGAAGAGAGTATTGTAGGATGTCGATTTTGAGAACGGAGTGAATGCTAAATTGAAAGTTCAAACGTTTCCCGCTCTGTTGTGTAGTGTGCTCGTTTCTGCATTGTTTTCCCGGCCTCCATTCTACTAATATTTTTTTTACCCATATCCATCGAACAGGCAGTTTGCTAGTTTTAGGCCGTAGACGTGCCGATTAATCTGTTTCTGATTTTTCTTTTGTTTTTCTTTTTTTAACCTTAATGGGCTGTTAAATTTTCTGCTCGTGCTTTAAACATGTGTCTTCTGTTGATTAAGCTTGTTGGTTGGGTATTATTTTCTCTTATTTTTTCTGGTCTTTGCCCTTCATACGAGAAATCGTTATTATTATTATTTTTTGTATTTTCTTGCACTTATACTTGCCCTTGACTGTTTCTCGGATCTTATACATTCTGTAGACATGTTTTCAGTGTAAGGAATTCTTTAATTATCAACAGAGCTATTATTTTTCTGGGATTTAATTAGTCTAAATGATTCTTTGGCCATAAGAAAAAATTTCTTGTAATTATCTATTATTCGGGGTTTGGCTTTTCGCCCGCTATTCTAATATTCCATACTACCAGTGAATGTTTTCCCATTTAAAAAGGAACATTTTAGAGTGTTTTTCGATACTCCCTGGTTTTGATTATCAGTTTTCTTAATCCTGATTTTGGTACCCATACTGTTCTTCAATTTTGATTGGTTAGAACTTTCTACATTATATGTTCCTTGTTCACTAATAAGCAATAACTAATTAATTTAACCTTGATTATCTATAACTTTTTTTAATCAATAAATCAATTATGATCTGTAACTTGTTTGGTTTTTAATTTATTCTCTGTGTAAATCATTGCCGAGCAGGTTGAACTTCCACCATGGACGGATATTGTTAAGACTGCAAGATTCAAAGAGCTTGCTCCTTACGACCCTGATTGGTATTATGTGAGAGCTGGTCAGTCCCCTTCTTTTCTTCTTTTGACTTCTCCGTATTCATATGAAATGAGCAAAACCAACTTAATTAATTGCTTCCGTTGTGTATGTTCTGTTTGTGTTATTTTTATGATTGCCTTTTCAAAATTATTCAGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAGCATTATTGATGTCGACCCAAAGGGGTGAGTACTAGCTTTTTATAGTTAGCTTAGTCATCATTATAATTTCTCTATTTCCTCAAATTATATCTGATTTCTATTTCAACCATGACCAATTGTATTCAATGCAACCCCACTTGTGCTTGTGTTTTATGCTGCTTTCAAATCATTTATTACAACATTGTTATTATCTATTGATGTTGTTTTTTATATCTTGATGGGTTTTCAGTGGAAGGAGAATCACCTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCAGGATTGTTGTTGCCCCTTGATTGATCAGTTACCTGTTTTGTTAATTAGAGACTTATGTTTTGCTGATGAGATACAATTTCTTATGCGCCATTAAAATTTTGGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGGTTACTCATGTTTTCTCACGTGATTCGTTATAAGTTTTTTCTTGGTTTTAGTAAGATGTTTCCAATATTTTATCAACAGTGACTTTGATGCTAAGCCTACAGAATTTTTGCATTTAGAGATTGTTATCATCATCATTCTTATTCGTGGGGGTTGAGATTTTCCTGGTCTTTTTTTTTTTTTTAATAAGATTTTCCTGGTCTTT

mRNA sequence

TGAGAAAGGCGGAAACCCTAGTTCTGCGATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCATGAGTTCGTGAAGGCCTATGCCGCTCATCTCAAGAGATCCGGAAAGGTTGAACTTCCACCATGGACGGATATTGTTAAGACTGCAAGATTCAAAGAGCTTGCTCCTTACGACCCTGATTGGTATTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAGCATTATTGATGTCGACCCAAAGGGTGGAAGGAGAATCACCTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCAGGATTGTTGTTGCCCCTTGATTGATCAGTTACCTGTTTTGTTAATTAGAGACTTATGTTTTGCTGATGAGATACAATTTCTTATGCGCCATTAAAATTTTGGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGGTTACTCATGTTTTCTCACGTGATTCGTTATAAGTTTTTTCTTGGTTTTAGTAAGATGTTTCCAATATTTTATCAACAGTGACTTTGATGCTAAGCCTACAGAATTTTTGCATTTAGAGATTGTTATCATCATCATTCTTATTCGTGGGGGTTGAGATTTTCCTGGTCTTTTTTTTTTTTTTAATAAGATTTTCCTGGTCTTT

Coding sequence (CDS)

ATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCATGAGTTCGTGAAGGCCTATGCCGCTCATCTCAAGAGATCCGGAAAGGTTGAACTTCCACCATGGACGGATATTGTTAAGACTGCAAGATTCAAAGAGCTTGCTCCTTACGACCCTGATTGGTATTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAGCATTATTGATGTCGACCCAAAGGGTGGAAGGAGAATCACCTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCAGGATTGTTGTTGCCCCTTGA

Protein sequence

MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Homology
[Close]
BLAST of Lcy05g007090 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-68
Identity = 120/142 (84.51%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ M+I+D+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Lcy05g007090 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.7e-68
Identity = 119/143 (83.22%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+I+++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Lcy05g007090 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.3e-67
Identity = 120/139 (86.33%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MSI+++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Lcy05g007090 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.0e-64
Identity = 115/140 (82.14%), Postives = 129/140 (92.14%), Query Frame = 0 

Query: 2   ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASM 61
           +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKGG 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M IIDVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

[Close]
BLAST of Lcy05g007090 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-45
Identity = 76/134 (56.72%), Postives = 110/134 (82.09%), Query Frame = 0 

Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + I++ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]
BLAST of Lcy05g007090 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lcy05g007090 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lcy05g007090 vs. ExPASy TrEMBL
Match: A0A6J1JTL0 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lcy05g007090 vs. ExPASy TrEMBL
Match: A0A6J1EBL3 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lcy05g007090 vs. ExPASy TrEMBL
Match: A0A6J1JX06 (40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.9e-75
Identity = 139/143 (97.20%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lcy05g007090 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.0 bits (746), Expect = 2.9e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 542 MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 601

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 602 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 661

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 662 GRRITSSGRRDLDQVAGRIVVAP 684

[Close]
BLAST of Lcy05g007090 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 2.9e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lcy05g007090 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.8 bits (743), Expect = 6.4e-75
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lcy05g007090 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo] >KAG7016113.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 139/143 (97.20%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Lcy05g007090 vs. NCBI nr
Match: KAG6578553.1 (40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 139/143 (97.20%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 40  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 99

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEM+I+DVDPKG
Sbjct: 100 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 159

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 160 GRKITSSGRRDLDQVAGRIVVAP 182

[Close]
BLAST of Lcy05g007090 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-69
Identity = 120/142 (84.51%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ M+I+D+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Lcy05g007090 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-69
Identity = 119/143 (83.22%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+I+++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Lcy05g007090 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 256.9 bits (655), Expect = 9.5e-69
Identity = 120/139 (86.33%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMSIIDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MSI+++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:
BLAST of Lcy05g007090 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FNP82.1e-6884.5140S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1[more]
Q9SGA62.7e-6883.2240S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1[more]
Q9LF301.3e-6786.3340S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1[more]
P409784.0e-6482.1440S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=... [more]
Q946131.4e-4556.7240S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1[more]
BLAST of Lcy05g007090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JTW81.4e-7598.6040S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=... [more]
A0A6J1H7M61.4e-7598.6040S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P... [more]
A0A6J1JTL03.1e-7597.9040S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=... [more]
A0A6J1EBL33.1e-7597.9040S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 P... [more]
A0A6J1JX066.9e-7597.2040S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=... [more]
BLAST of Lcy05g007090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593129.12.9e-7598.60Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022954406.12.9e-7598.6040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso... [more]
XP_022923365.16.4e-7597.9040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso... [more]
XP_022938991.11.4e-7497.2040S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p... [more]
KAG6578553.11.4e-7497.2040S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Lcy05g007090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G61170.11.5e-6984.51Ribosomal protein S19e family protein [more]
AT3G02080.11.9e-6983.22Ribosomal protein S19e family protein [more]
AT5G15520.19.5e-6986.33Ribosomal protein S19e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..142
e-value: 2.9E-84
score: 295.9
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..140
e-value: 3.1E-56
score: 188.8
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 3..142
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..142
e-value: 9.5E-71
score: 238.7
NoneNo IPR availablePANTHERPTHR11710:SF2040S RIBOSOMAL PROTEIN S19-3coord: 3..142
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 6..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g007090.1Lcy05g007090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome