Lcy05g005560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g005560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	leucine-rich repeat extensin-like protein 3
Location	Chr05: 5085354 .. 5086694 (+)
RNA-Seq Expression	Lcy05g005560
Synteny	Lcy05g005560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACACTAGTATACTTCATCTTGGCCGGAAAGCCGAAAAATGTGCTCCTTTTCTGGAGTGCTGGCACGGCTTTTTTATACCCAACGTCTACACCAGATTCCGAACCCCAGCCGATGTGGGACAAGTTGATTCCCGCACGATCGTCCTCGCGTGCGAATAGGCTTCAAATTAGGGAGTTTCACTTTCAACCTCCATGTGAACTGAGTTAGGCTACTTCAATAATTTCAATCACAGCTATAATTTGTTAATTTTCTTTTTGGAACTTAAATTCTGTTTTGATTTCAAACTTCAATTCTTCTTCTTATTTATTGGGTTTTCGTCTTTTCATGATGGATTGTTCCGTAGAAGCTAAATCACCTTGTATTGGTTGGTGCACATACACATGCCCTTCTCTAAATCTTATAACTCTGCAATTTAATCCAAAATAAATCCAATTTCTCTCCCTTTATATTCCCATTTCCTCTCCCATTCCACCGTCTACCTTCCAATTCACTTCAATGGCGAATCTCCTCTCCATTTTCCTCACTCTCTTCCTCTTTTCACTCTCCAAATTTTCCTCTCCCTCCTCGGCAACCACCGTGGCCAACGATCAGACCAGCTGCTCCATGTGCTCAGGTTGCGACAATCCCTGCCAACTTCCGCCTCCGCCTCCGCCTCCGCCGCCGGTTGTTGACTGCCCGCCTCCTCCCTCGCCGCCGCCCCCTCCACAGCCAGTTCCCACTTCCGAATGCCCCCCTCCCCCGGCGCCCCCCTCGTGCGACTCGTGCGTCTACCCTTCACCGCCGCCGCCGTCCTCCGTCATTCCCTACCCCCCGGCCGACGGAGGCCAGTTTCCCGGCGTTGCTCCGCCGCCGCCGAACCCGATTTTACCGTACTATCCTTACTATTACTACAGTCCTCCCTCTGCTTCTGGCAAATCCGTTTCGTTTTCGTGGGAAGTTTGGCCTTTGGCTTTCTTCATCATTCTTTGCCTCTAATGGAAACTGAATTCTCCATTGCTGACAGAGAAATGGGGTTCGATTATATTTCTTTTTTGTTTTTTTTTTTTTTTGTTTCTTTTCCTCTGTAATTTCTGCCATTGAAGAACGGGGAAAGAGGACAAAGAGGAGATCAGAATAAGCAGGGTAGTGAAATCGAGGAAATTACGTTACGTGTAGATTGATTAATATGCATTTAATTTTATGCTATAAATTAAGACGTATTAATGATTCTTTATTTTTCTTTGTTTGACTTTCATCATTTTATGGGTTGGAAATCGAAATAGCAATGTATTCAAAGCAAGGAAAAGTCTAATGTAATTATATATAAAGCCGTTTTCACATTTTAGTATTTAGAATTTAT

mRNA sequence

CTACACTAGTATACTTCATCTTGGCCGGAAAGCCGAAAAATGTGCTCCTTTTCTGGAGTGCTGGCACGGCTTTTTTATACCCAACGTCTACACCAGATTCCGAACCCCAGCCGATGTGGGACAAGTTGATTCCCGCACGATCGTCCTCGCGTGCGAATAGGCTTCAAATTAGGGAGTTTCACTTTCAACCTCCATGTGAACTGAGTTAGGCTACTTCAATAATTTCAATCACAGCTATAATTTGTTAATTTTCTTTTTGGAACTTAAATTCTGTTTTGATTTCAAACTTCAATTCTTCTTCTTATTTATTGGGTTTTCGTCTTTTCATGATGGATTGTTCCGTAGAAGCTAAATCACCTTGTATTGGTTGGTGCACATACACATGCCCTTCTCTAAATCTTATAACTCTGCAATTTAATCCAAAATAAATCCAATTTCTCTCCCTTTATATTCCCATTTCCTCTCCCATTCCACCGTCTACCTTCCAATTCACTTCAATGGCGAATCTCCTCTCCATTTTCCTCACTCTCTTCCTCTTTTCACTCTCCAAATTTTCCTCTCCCTCCTCGGCAACCACCGTGGCCAACGATCAGACCAGCTGCTCCATGTGCTCAGGTTGCGACAATCCCTGCCAACTTCCGCCTCCGCCTCCGCCTCCGCCGCCGGTTGTTGACTGCCCGCCTCCTCCCTCGCCGCCGCCCCCTCCACAGCCAGTTCCCACTTCCGAATGCCCCCCTCCCCCGGCGCCCCCCTCGTGCGACTCGTGCGTCTACCCTTCACCGCCGCCGCCGTCCTCCGTCATTCCCTACCCCCCGGCCGACGGAGGCCAGTTTCCCGGCGTTGCTCCGCCGCCGCCGAACCCGATTTTACCGTACTATCCTTACTATTACTACAGTCCTCCCTCTGCTTCTGGCAAATCCGTTTCGTTTTCGTGGGAAGTTTGGCCTTTGGCTTTCTTCATCATTCTTTGCCTCTAATGGAAACTGAATTCTCCATTGCTGACAGAGAAATGGGGTTCGATTATATTTCTTTTTTGTTTTTTTTTTTTTTTGTTTCTTTTCCTCTGTAATTTCTGCCATTGAAGAACGGGGAAAGAGGACAAAGAGGAGATCAGAATAAGCAGGGTAGTGAAATCGAGGAAATTACGTTACGTGTAGATTGATTAATATGCATTTAATTTTATGCTATAAATTAAGACGTATTAATGATTCTTTATTTTTCTTTGTTTGACTTTCATCATTTTATGGGTTGGAAATCGAAATAGCAATGTATTCAAAGCAAGGAAAAGTCTAATGTAATTATATATAAAGCCGTTTTCACATTTTAGTATTTAGAATTTAT

Coding sequence (CDS)

ATGGCGAATCTCCTCTCCATTTTCCTCACTCTCTTCCTCTTTTCACTCTCCAAATTTTCCTCTCCCTCCTCGGCAACCACCGTGGCCAACGATCAGACCAGCTGCTCCATGTGCTCAGGTTGCGACAATCCCTGCCAACTTCCGCCTCCGCCTCCGCCTCCGCCGCCGGTTGTTGACTGCCCGCCTCCTCCCTCGCCGCCGCCCCCTCCACAGCCAGTTCCCACTTCCGAATGCCCCCCTCCCCCGGCGCCCCCCTCGTGCGACTCGTGCGTCTACCCTTCACCGCCGCCGCCGTCCTCCGTCATTCCCTACCCCCCGGCCGACGGAGGCCAGTTTCCCGGCGTTGCTCCGCCGCCGCCGAACCCGATTTTACCGTACTATCCTTACTATTACTACAGTCCTCCCTCTGCTTCTGGCAAATCCGTTTCGTTTTCGTGGGAAGTTTGGCCTTTGGCTTTCTTCATCATTCTTTGCCTCTAA

Protein sequence

MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDCPPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVAPPPPNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIILCL

Homology

[Close]

BLAST of Lcy05g005560 vs. ExPASy Swiss-Prot
Match: Q9LUI1 (Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=LRX6 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-04
Identity = 52/96 (54.17%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 40  GCDNPCQLPPPPPPPPPVVDCPPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPS 99
           GC  P   PPPPPPPPP    PPPP PPPPP P P     PPP PPS    VYP PPPP 
Sbjct: 373 GCSPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYP-PPPPP 432

Query: 100 SVIPYPPADGGQFPGVAPPPPNPILPYYPYYYYSPP 136
            V P PP+    +P   PPPP+P     PY Y SPP
Sbjct: 433 YVYPPPPSPPYVYP---PPPPSP----QPYMYPSPP 460

[Close]

BLAST of Lcy05g005560 vs. ExPASy TrEMBL
Match: A0A5D3D2P5 (Extensin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001460 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54
Identity = 125/160 (78.12%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDC 60
           MAN + IFLT FLFSL KFS  SSA+ VA DQ  CSMCS CDNPCQL PPPPPPPPVV+C
Sbjct: 1   MANFIFIFLTFFLFSLPKFSLLSSASAVAKDQVGCSMCSACDNPCQL-PPPPPPPPVVEC 60

Query: 61  PPPPSPPPPPQ---PVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVAP 120
           PPPPSPPPPP    P+PTS+CPPPP+PPSCD+CVYPSPPPPSSV PYPP+DGGQFPG+AP
Sbjct: 61  PPPPSPPPPPSPPPPLPTSQCPPPPSPPSCDACVYPSPPPPSSVQPYPPSDGGQFPGIAP 120

Query: 121 PPPNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIIL 158
           PPPNPILPY+PYYYYSPPSAS KSV FSW++ PL F II+
Sbjct: 121 PPPNPILPYFPYYYYSPPSASPKSVPFSWKLLPLPFLIII 159

[Close]

BLAST of Lcy05g005560 vs. ExPASy TrEMBL
Match: A0A0A0K5N4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405965 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.4e-52
Identity = 126/160 (78.75%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDC 60
           MANL+SIFLT FL SL+KFS  SSAT VA DQ  CSMCS CDNPCQL PPPPPPPPVV+C
Sbjct: 1   MANLISIFLTFFLLSLTKFSLLSSATAVAKDQVGCSMCSTCDNPCQL-PPPPPPPPVVEC 60

Query: 61  -PPPPSPPP--PPQPVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVAP 120
            PPPPSPPP  PP P+PTS+CPPPP+PPSCD+CVYPSPPPPSSV PYPP+ GGQFPG+AP
Sbjct: 61  PPPPPSPPPPSPPPPLPTSQCPPPPSPPSCDACVYPSPPPPSSVQPYPPSGGGQFPGIAP 120

Query: 121 PPPNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIIL 158
           PPPNPILPY+PYYYYSPPSAS KSV FSW+   L F IIL
Sbjct: 121 PPPNPILPYFPYYYYSPPSASPKSVPFSWKFLALPFLIIL 159

[Close]

BLAST of Lcy05g005560 vs. ExPASy TrEMBL
Match: A0A6J1JMT5 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111488311 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.9e-51
Identity = 124/159 (77.99%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPP--VV 60
           MA+L SIFLTLFLFSLSKFS  S AT  A DQ  CSMCS CDNPCQLPPPPPPPPP  VV
Sbjct: 1   MADLTSIFLTLFLFSLSKFSL-SLATVSARDQVGCSMCSSCDNPCQLPPPPPPPPPPLVV 60

Query: 61  DCPPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVAPP 120
           DCPPPPSPPPPP P P  ECPPPP+PPSCD+CVYPSPPPPSS+ PY P DGGQ+PGVAPP
Sbjct: 61  DCPPPPSPPPPPLPKP--ECPPPPSPPSCDACVYPSPPPPSSIQPYTPTDGGQYPGVAPP 120

Query: 121 PPNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIIL 158
           PPNPILPY+PYYYY+PPS SGKSV FSW+  PL F + L
Sbjct: 121 PPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFVLRL 156

[Close]

BLAST of Lcy05g005560 vs. ExPASy TrEMBL
Match: A0A6J1GPW6 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111456389 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.3e-47
Identity = 117/162 (72.22%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDC 60
           MA+L SIFLTLFL SLSKFS  SS T  A DQ  CSMC+ CDNPCQL   PPPPP +VDC
Sbjct: 18  MADLTSIFLTLFLISLSKFSL-SSPTVSARDQVGCSMCASCDNPCQL---PPPPPLIVDC 77

Query: 61  PPPPSPPPPPQPVP-----TSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGV 120
           PPPPSPPPPP P P     T ECPPPP+PPSCD+CVYPSPPPPSS+ PY P DGGQ+PG+
Sbjct: 78  PPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPSSIQPYTPTDGGQYPGL 137

Query: 121 APPPPNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIIL 158
           APPPPNPILPY+PYYYY+PPS SGKSV FSW+  PL F + L
Sbjct: 138 APPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL 175

[Close]

BLAST of Lcy05g005560 vs. ExPASy TrEMBL
Match: A0A6J1KR41 (glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like OS=Cucurbita maxima OX=3661 GN=LOC111497904 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.5e-43
Identity = 107/160 (66.88%), Postives = 119/160 (74.38%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDC 60
           MANL+SI+ T  LF+LSKFS  SSAT VA DQ  CSMCS CDNPCQL PPPPPPPP   C
Sbjct: 1   MANLVSIYFTFLLFTLSKFSFLSSATAVAKDQVGCSMCSSCDNPCQL-PPPPPPPPTSQC 60

Query: 61  PPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVA-PPP 120
           PP                PPPP PPSC +CV+PSP PP+SV PY PADGGQFPG+A PPP
Sbjct: 61  PP----------------PPPPPPPSCSTCVHPSPTPPTSVQPYQPADGGQFPGLAPPPP 120

Query: 121 PNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIILCL 160
           PNPILPYYPYYYYSPP+ASG+SVS SW++ PL   II+CL
Sbjct: 121 PNPILPYYPYYYYSPPTASGESVSISWKILPLGLLIIICL 143

[Close]

BLAST of Lcy05g005560 vs. NCBI nr
Match: KAA0046672.1 (extensin-2 [Cucumis melo var. makuwa] >TYK18207.1 extensin-2 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 3.1e-54
Identity = 125/160 (78.12%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDC 60
           MAN + IFLT FLFSL KFS  SSA+ VA DQ  CSMCS CDNPCQL PPPPPPPPVV+C
Sbjct: 1   MANFIFIFLTFFLFSLPKFSLLSSASAVAKDQVGCSMCSACDNPCQL-PPPPPPPPVVEC 60

Query: 61  PPPPSPPPPPQ---PVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVAP 120
           PPPPSPPPPP    P+PTS+CPPPP+PPSCD+CVYPSPPPPSSV PYPP+DGGQFPG+AP
Sbjct: 61  PPPPSPPPPPSPPPPLPTSQCPPPPSPPSCDACVYPSPPPPSSVQPYPPSDGGQFPGIAP 120

Query: 121 PPPNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIIL 158
           PPPNPILPY+PYYYYSPPSAS KSV FSW++ PL F II+
Sbjct: 121 PPPNPILPYFPYYYYSPPSASPKSVPFSWKLLPLPFLIII 159

[Close]

BLAST of Lcy05g005560 vs. NCBI nr
Match: XP_022991777.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50
Identity = 124/159 (77.99%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPP--VV 60
           MA+L SIFLTLFLFSLSKFS  S AT  A DQ  CSMCS CDNPCQLPPPPPPPPP  VV
Sbjct: 1   MADLTSIFLTLFLFSLSKFSL-SLATVSARDQVGCSMCSSCDNPCQLPPPPPPPPPPLVV 60

Query: 61  DCPPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVAPP 120
           DCPPPPSPPPPP P P  ECPPPP+PPSCD+CVYPSPPPPSS+ PY P DGGQ+PGVAPP
Sbjct: 61  DCPPPPSPPPPPLPKP--ECPPPPSPPSCDACVYPSPPPPSSIQPYTPTDGGQYPGVAPP 120

Query: 121 PPNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIIL 158
           PPNPILPY+PYYYY+PPS SGKSV FSW+  PL F + L
Sbjct: 121 PPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFVLRL 156

[Close]

BLAST of Lcy05g005560 vs. NCBI nr
Match: XP_023549397.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 2.8e-47
Identity = 117/158 (74.05%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDC 60
           MA+L SIFLTLFL SLSKFS  SSAT  A DQ  CSMCS CDNPCQL   PPPPP +VDC
Sbjct: 1   MADLTSIFLTLFLISLSKFSL-SSATVSARDQVGCSMCSSCDNPCQL---PPPPPLIVDC 60

Query: 61  -PPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVAPPP 120
            PPPP PP PP P+PT ECPPPP+PPSCD+CVYPSPPPPSS+ PY P DGGQ+PG+APPP
Sbjct: 61  SPPPPPPPSPPPPLPTPECPPPPSPPSCDACVYPSPPPPSSIQPYTPTDGGQYPGLAPPP 120

Query: 121 PNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIIL 158
           PNPILPY+PYYYY+PPS SGKSV FSW+  PL F + L
Sbjct: 121 PNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL 154

[Close]

BLAST of Lcy05g005560 vs. NCBI nr
Match: XP_022953998.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita moschata])

HSP 1 Score: 198.4 bits (503), Expect = 4.8e-47
Identity = 117/162 (72.22%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDC 60
           MA+L SIFLTLFL SLSKFS  SS T  A DQ  CSMC+ CDNPCQL   PPPPP +VDC
Sbjct: 18  MADLTSIFLTLFLISLSKFSL-SSPTVSARDQVGCSMCASCDNPCQL---PPPPPLIVDC 77

Query: 61  PPPPSPPPPPQPVP-----TSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGV 120
           PPPPSPPPPP P P     T ECPPPP+PPSCD+CVYPSPPPPSS+ PY P DGGQ+PG+
Sbjct: 78  PPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPSSIQPYTPTDGGQYPGL 137

Query: 121 APPPPNPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIIL 158
           APPPPNPILPY+PYYYY+PPS SGKSV FSW+  PL F + L
Sbjct: 138 APPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL 175

[Close]

BLAST of Lcy05g005560 vs. NCBI nr
Match: XP_023514546.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-45
Identity = 106/159 (66.67%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 1   MANLLSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDC 60
           M NL+SI+ T  LF+LSKFS  SSAT VA DQ  CSMCS CDNPCQLPPPPPPP      
Sbjct: 1   MVNLVSIYFTFLLFTLSKFSFLSSATAVAKDQVGCSMCSSCDNPCQLPPPPPPP------ 60

Query: 61  PPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPSSVIPYPPADGGQFPGVAPPPP 120
                        PTS+CPPPP PPSC +C++PSP PPSSV PY PADGGQFPG+APPPP
Sbjct: 61  -------------PTSQCPPPPPPPSCSTCIHPSPLPPSSVQPYLPADGGQFPGLAPPPP 120

Query: 121 NPILPYYPYYYYSPPSASGKSVSFSWEVWPLAFFIILCL 160
           NPILPYYPYYYYSPP+ASG+SVS SW++ PL   II+CL
Sbjct: 121 NPILPYYPYYYYSPPTASGESVSISWKILPLGLLIIICL 140

[Close]

BLAST of Lcy05g005560 vs. TAIR 10
Match: AT5G49280.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 74.3 bits (181), Expect = 9.7e-14
Identity = 66/156 (42.31%), Postives = 81/156 (51.92%), Query Frame = 0


Query: 21  SPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDCPPPPSPPPPPQPVPTSECPP 80
           S +   T  ++  SC+MCS CDNPC          PV   PPPPSPPPP    PT+ CPP
Sbjct: 19  SVTPTVTSKDEVVSCTMCSSCDNPCS---------PVQSSPPPPSPPPP--STPTTACPP 78

Query: 81  PPAPPSC---DSCVYPSP---------PPP----SSVIPYPPADGGQFPGVAPPPPNPIL 140
           PP+PPS     S  YP P         PPP         YPP   G +P   PPPPNPI+
Sbjct: 79  PPSPPSSGGGSSYYYPPPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYP--TPPPPNPIV 138

Query: 141 PYYPYYYYSPPSASGKS-VSFSWEVWPLAFFIILCL 160
           PY+P+YY++PP  SG      S+ +    F + LCL
Sbjct: 139 PYFPFYYHTPPPGSGSDRFMSSYSIIFALFAVFLCL 161

[Close]

BLAST of Lcy05g005560 vs. TAIR 10
Match: AT4G16140.1 (proline-rich family protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 70/172 (40.70%), Postives = 89/172 (51.74%), Query Frame = 0


Query: 5   LSIFLTLFLFSLSKFSSPSSATTVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDCPPPP 64
           +  F T  LF    F + ++  T  +    C+MC+ CDNPCQ P P PPPPP    PPPP
Sbjct: 1   METFRTFHLFLFFFFFTFTTTLTSPSQIADCTMCTSCDNPCQ-PNPSPPPPPSNPSPPPP 60

Query: 65  SPPPPPQPVPTSECPPPPA----------PPSCDSCVYPSPPPPSSVIPY--PPADGGQF 124
           SP        T+ CPPPP+          PP+  S  Y  PP  SS   Y  PP  GG +
Sbjct: 61  SP-------TTTACPPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSGGYYYPPPKSGGNY 120

Query: 125 PGVAPPPPNPILPYYPYYYYSPP-----SASGKSVSFSWEVWPLAFFIILCL 160
           P    PPPNPI+PY+P+YYY+PP     S S   + FS+ V   +F +I  L
Sbjct: 121 P--YTPPPNPIVPYFPFYYYNPPPQSVMSGSDAKIRFSYGV---SFILIFSL 159

[Close]

BLAST of Lcy05g005560 vs. TAIR 10
Match: AT3G06750.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-10
Identity = 53/147 (36.05%), Postives = 66/147 (44.90%), Query Frame = 0


Query: 27  TVANDQTSCSMCSGCDNPCQLPPPPPPPPPVVDCPPPPSPPPPPQPVPTSECPPPPAPPS 86
           T  ++  SC+MCS CDNPC                          PVP+S  PPPP P S
Sbjct: 24  TSKDETVSCTMCSSCDNPC-------------------------NPVPSSYSPPPPPPSS 83

Query: 87  C--DSCVYPSPPPPSSV--IPYPPADGGQFPG-----------VAPPPPNPILPYYPYYY 146
                  Y SPPPPSS   + YPP  GG   G             PPPPNPI+PY+P+YY
Sbjct: 84  SGGGGSYYYSPPPPSSSGGVKYPPPYGGDGYGGYYPPPYYGNYGTPPPPNPIVPYFPFYY 143

Query: 147 YSPPSASGKSVSFSWEVWPLAFFIILC 159
           ++PP     S      +    F ++LC
Sbjct: 144 HTPPQGYSGSARLQNSLLFALFAVLLC 145

[Close]

BLAST of Lcy05g005560 vs. TAIR 10
Match: AT3G22800.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 48.1 bits (113), Expect = 7.4e-06
Identity = 52/96 (54.17%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 40  GCDNPCQLPPPPPPPPPVVDCPPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPS 99
           GC  P   PPPPPPPPP    PPPP PPPPP P P     PPP PPS    VYP PPPP 
Sbjct: 373 GCSPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYP-PPPPP 432

Query: 100 SVIPYPPADGGQFPGVAPPPPNPILPYYPYYYYSPP 136
            V P PP+    +P   PPPP+P     PY Y SPP
Sbjct: 433 YVYPPPPSPPYVYP---PPPPSP----QPYMYPSPP 460

[Close]

BLAST of Lcy05g005560 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 41.2 bits (95), Expect = 9.1e-04
Identity = 50/92 (54.35%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 44  PCQLPPPPPPPPPVVDCPPPPSPPPPPQPVPTSECPPPPAPPSCDSCVYPSPPPPSSVIP 103
           P   PPPPPPPPP V  PPPP PPPPP PV +   PPPP PP     VY SPPPPS   P
Sbjct: 434 PVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSP--PPPPPPPPPPPPVY-SPPPPSPPPP 493

Query: 104 YPPADGGQFPGVAPPPPNPILPYYPYYYYSPP 136
            PP      P   PPPP    P  P  Y SPP
Sbjct: 494 PPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPP 522

The following BLAST results are available for this feature:

BLAST of Lcy05g005560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUI1	1.0e-04	54.17	Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of Lcy05g005560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2P5	1.5e-54	78.13	Extensin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001460 PE...	[more]
A0A0A0K5N4	2.4e-52	78.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405965 PE=4 SV=1	[more]
A0A6J1JMT5	5.9e-51	77.99	leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GPW6	2.3e-47	72.22	leucine-rich repeat extensin-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KR41	4.5e-43	66.88	glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like OS=Cucurbita maxi...	[more]

BLAST of Lcy05g005560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046672.1	3.1e-54	78.13	extensin-2 [Cucumis melo var. makuwa] >TYK18207.1 extensin-2 [Cucumis melo var. ...	[more]
XP_022991777.1	1.2e-50	77.99	leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]	[more]
XP_023549397.1	2.8e-47	74.05	leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022953998.1	4.8e-47	72.22	leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]	[more]
XP_023514546.1	2.0e-45	66.67	leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy05g005560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49280.1	9.7e-14	42.31	hydroxyproline-rich glycoprotein family protein	[more]
AT4G16140.1	2.6e-11	40.70	proline-rich family protein	[more]
AT3G06750.1	2.9e-10	36.05	hydroxyproline-rich glycoprotein family protein	[more]
AT3G22800.1	7.4e-06	54.17	Leucine-rich repeat (LRR) family protein	[more]
AT4G13340.1	9.1e-04	54.35	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..87
None	No IPR available	PANTHER	PTHR37702	PROLINE-RICH FAMILY PROTEIN	coord: 65..145 coord: 6..67
None	No IPR available	PANTHER	PTHR37702:SF9	PROLINE-RICH FAMILY PROTEIN	coord: 65..145 coord: 6..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g005560.1	Lcy05g005560.1	mRNA