Lcy05g004840 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g004840
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionS-adenosylmethionine synthase
LocationChr05: 4445329 .. 4445909 (-)
RNA-Seq ExpressionLcy05g004840
SyntenyLcy05g004840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGTAACCCGGCACGTCATCGAAAGGCTAATATCAAATATCGACCGTTCGATCACCCACAGATGCCCCTTCACCAACTCTATTTCAACGGCCACGATCTTCCACGTCCAACGGCTCGGAAGAATCTTTCGAAATTCCATCCCTAGTCCCTACACTCTCCCTATTGGCTCTAGGCTATTCCGACCGGTTATTCCGGTAGCCGGGCGAGTGGCTGCACGCTATAAATACAGGCTTTGTTCATTTGGTAGTCCCTGTACCCTTGAGCTTCGCCTTCTTTTAGGGGTCTGGTTCGGTTGGCGTATTAGCTCAAATTCTTTCTCTCTTCCAGATCTACGCAGCCGATTTCAACAGGTTTGCGAGTTCTGTTCACCACTCGTTCATTGCCATTTTTCTTTTTCTGCATCTTTGAGCATGATTGTGGTTCTTCATTTCTTCTTCTTTGCTCCTGGTTTCTGAATGAATTTTTGGGGCTTTTTCAGCTTTCTAATCTAGCGGTAGTGATGGATTTGTTTGTTTTGATGTGTGAATCGGTTGTCTACTGCTTGTATGTTGCGATGGAGTATGTTGCTCAGATGTGA

mRNA sequence

ATGTCAGTAACCCGGCACGTCATCGAAAGGCTAATATCAAATATCGACCGTTCGATCACCCACAGATGCCCCTTCACCAACTCTATTTCAACGGCCACGATCTTCCACGTCCAACGGCTCGGAAGAATCTTTCGAAATTCCATCCCTAGTCCCTACACTCTCCCTATTGGCTCTAGGCTATTCCGACCGGTTATTCCGGTAGCCGGGCGAGTGGCTGCACGCTATAAATACAGGCTTTGTTCATTTGGTAGTCCCTGTACCCTTGAGCTTCGCCTTCTTTTAGGGGTCTGGTTCGGTTGGCGTATTAGCTCAAATTCTTTCTCTCTTCCAGATCTACGCAGCCGATTTCAACAGCTTTCTAATCTAGCGGTAGTGATGGATTTGTTTGTTTTGATGTGTGAATCGGTTGTCTACTGCTTGTATGTTGCGATGGAGTATGTTGCTCAGATGTGA

Coding sequence (CDS)

ATGTCAGTAACCCGGCACGTCATCGAAAGGCTAATATCAAATATCGACCGTTCGATCACCCACAGATGCCCCTTCACCAACTCTATTTCAACGGCCACGATCTTCCACGTCCAACGGCTCGGAAGAATCTTTCGAAATTCCATCCCTAGTCCCTACACTCTCCCTATTGGCTCTAGGCTATTCCGACCGGTTATTCCGGTAGCCGGGCGAGTGGCTGCACGCTATAAATACAGGCTTTGTTCATTTGGTAGTCCCTGTACCCTTGAGCTTCGCCTTCTTTTAGGGGTCTGGTTCGGTTGGCGTATTAGCTCAAATTCTTTCTCTCTTCCAGATCTACGCAGCCGATTTCAACAGCTTTCTAATCTAGCGGTAGTGATGGATTTGTTTGTTTTGATGTGTGAATCGGTTGTCTACTGCTTGTATGTTGCGATGGAGTATGTTGCTCAGATGTGA

Protein sequence

MSVTRHVIERLISNIDRSITHRCPFTNSISTATIFHVQRLGRIFRNSIPSPYTLPIGSRLFRPVIPVAGRVAARYKYRLCSFGSPCTLELRLLLGVWFGWRISSNSFSLPDLRSRFQQLSNLAVVMDLFVLMCESVVYCLYVAMEYVAQM
Homology
[Close]
BLAST of Lcy05g004840 vs. ExPASy TrEMBL
Match: A0A5D3CES1 (S-adenosylmethionine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00050 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 58/93 (62.37%), Postives = 65/93 (69.89%), Query Frame = 0 

Query: 50  SPYTLPIG-SRLFRPVIPVAGRVAARYKYRLCSFGSPCTLELRLLLGVWFGWRISSNSFS 109
           SPYT P    R  RPVIPVAG+VA RYKY LCS  SPCT+ELRLL+ +WFGWRISSNSFS
Sbjct: 3   SPYTPPYWLPRASRPVIPVAGKVAGRYKYPLCSSRSPCTVELRLLIELWFGWRISSNSFS 62

Query: 110 LPDLRSRFQQ-----LSNLAVVMDLFVLMCESV 137
           LPDLR RF Q     L +    M+ F+   ESV
Sbjct: 63  LPDLRCRFHQGNFLFLYSSGTEMETFLFTSESV 95

[Close]
BLAST of Lcy05g004840 vs. NCBI nr
Match: KAA0058565.1 (S-adenosylmethionine synthase 2-like [Cucumis melo var. makuwa] >TYK10363.1 S-adenosylmethionine synthase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-19
Identity = 58/93 (62.37%), Postives = 65/93 (69.89%), Query Frame = 0 

Query: 50  SPYTLPIG-SRLFRPVIPVAGRVAARYKYRLCSFGSPCTLELRLLLGVWFGWRISSNSFS 109
           SPYT P    R  RPVIPVAG+VA RYKY LCS  SPCT+ELRLL+ +WFGWRISSNSFS
Sbjct: 3   SPYTPPYWLPRASRPVIPVAGKVAGRYKYPLCSSRSPCTVELRLLIELWFGWRISSNSFS 62

Query: 110 LPDLRSRFQQ-----LSNLAVVMDLFVLMCESV 137
           LPDLR RF Q     L +    M+ F+   ESV
Sbjct: 63  LPDLRCRFHQGNFLFLYSSGTEMETFLFTSESV 95

The following BLAST results are available for this feature:
BLAST of Lcy05g004840 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g004840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CES15.1e-2062.37S-adenosylmethionine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
BLAST of Lcy05g004840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058565.11.0e-1962.37S-adenosylmethionine synthase 2-like [Cucumis melo var. makuwa] >TYK10363.1 S-ad... [more]
BLAST of Lcy05g004840 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g004840.1Lcy05g004840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding