Lcy05g004600 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g004600
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibosomal protein
LocationChr05: 4222978 .. 4227237 (-)
RNA-Seq ExpressionLcy05g004600
SyntenyLcy05g004600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCAGAAACTCTCTTATCTCTTCCATTTTTATATTGATAGACTGCCAGAAACTTCTTCTTCTTCTCTTCGATTGACAGACTGAGCTCTTTCTTCCCCAATGACGATGGCTACTTGTAGTCCCACTATGCACTCGTCCCTTACGATGGCCCACACTTCTTCAGTTCACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCAGGCCCATGGCTGCCTCTTCCACCGCCAAAATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCAATCAATTGGGTCGACCTTAATTTTAGGAGGGAACTTAGGTATCACTTGGTTGTGGCTGCTTTGGCTGCGGAAATTGAGGTGGCTGAGGTCGTGGAAGAGAATGGAGAAGAGGGAAATGATGGATCAGCTACTTCAATTATGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAAAGGGACAGAGTAAGCTTGAGCTTAATCTCTCATGTATTTGGCTGTTTTCAATCTTGTTCACTGGCTTTTTGGATATGTGTTAGAGTTTGATTGGTGGGTTTCGCTTCGTTGTAGTTTTTTTTTCTTCTTTTGTTACTGCTCTGGGGCTTGAATTTTAGAAATTGTTGCCTGTTTATGGAGATGGAGTTTATCTTAGGACTTATCCTCTTGTTTTCCTGTCTACTTTCATTGTTTGTCTTCCACAAGGTTGACTGGTTTTCTGGGGCTCTTCATTTTTTTTCTTTCTTTTTGTTGTTTTTATTGTTAATTGAGGTTATCATTTTTGGGTTAGGCCCGGAAGTATGTATTCCAAAGGGTCGTGTATGAAGTCTCAAGAGATCAATTGTTACAAAGTGAAATGATTCCTTTAAAATTTTAATGGAACCGTGCTTTCTGTAAGGAAAATATAGATTCCATTAGTGGACTATTCTGTTGGTTAGCTCTGCCTTTCCCTGTAAAAAATTTTGTACGGGCGTCCCTAGTTTGTTATTCTTGTGTCCATTGGTTCTTTCCCTTCTGTGTCACCATAAGGCTTATGTGTATGTTTCAGTACTGGAATTTACTTTATTTTTGTTCAACCTTTGGTTAAAAGTTCTCTTGACGTTATGTAACAATTAGTTAGAGTTTGTGTATTATAGTTACTGTGCAGCTGTAAGTTTGTTATTAGTTTGCTGCTTTCTCTGCCTATATATTCTTGAGGGATGATTCATGTATTTCGTAGAGTTTTAATGACTTATTAATAAAATTCTCTTTTCCCTCATTTCACGTGTTAGTTTGTTCTCTCTCTACTTTCATTATCTTCTAGGAGTAATAGTCCCTATCATGTCAATTTCTGATTATGGCTTCGTTGGTTGACTGTGACCCATTTGAGGTTGAAAGAAAACTTCGCAATGGGGCGGTCTTGTTCTGTTTCTTTGGTTTGCTCCTTTGTAGCATCAGCCTTTGCTGTTAGTTATTATCCATATTTTCTTCTTTATCTTATTTTATTCGAAATTCTACTTTGAGCCAGACTGTAGATTTAAAGAGATGTCCATAAACGATATGTGCATTACTTTTAGTTCATATTGTTGGCTGTGTTCTTGTAAACTGTGTACTTTCCACCTTCTCTCATTACTGTTGCAACAGTTCTGACATGAAATTGTGCTCTGAAAACATGCAGACAAGGTCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGCAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAGCACAAAATTCGTGGAAACTGCTGAAGCCCACTTCCGATTAAACATTGATCCGAAATATAATGATCAACAGCTGAGAGCAACAGTAAGTTTCCTTGGTAATTGGATGATAATTGAGAAATAAAGTTAAAAGTCTAGCCCAAACCCACCACTTGATTCTACTATATCTACATCCTAAATCACCAATGCTCACTTTTATTATAGGTAAATCTGCCCAAGGGAACTGGACAGACAGTCAAAGTAGCTGTTCTTACTCAAGGTAATGATTAAATTTAACTTTAATGATATTTTCATTGGTTAGGATAACTCATAACATTCAATGGTAGAAGTAACTAGAGTTTTCAATCAGTTCTGGTTTCACTTGATAGAACAGATCAAAAAATTTCTTTCACTTGGGAAGAACCATCATTTCCTTTTGGAGAAAGCATTCGGAAAAAAGGATATTCACACTTGATGCAACTAGTTATATGAACTTGAATGGGTATTGTTGTCTTCATAGTGTTTGTGAATCTGATAGTGTGTGGTGGAGAATCCTCTATTCGAAAGGGAGGTTTACTTGCTTGATTGAAAACGGCTCTGTTAGTGAGATTGCTTTAACTATCAAAGTGTTGTTTATATGAATTTTTCTTTACTATTTATGAGTGAGTATCGTACTTGTTAGATGTCACTTAGTTCTGGTGTGACCTTCTGTGATACACGGTATTTGGAAGATAAAAGTATTTATATCTTATACAGCTTTGCGGTCATTGGCTAATACTGATAAGTCGGTTTTCCCCCTTGCCCTTGTAATTAGTTTCAAAATAATGTGAGTGGATAGAATGAGATGAACGCTTGGAGCTATGGATTTTTTAGCTCTTCTTTTTTAATTTTGGAACTTATTTTTTCTTTTAGATGTGGATTCTCTCTATCTGTTCCCATCTCTCTAGTCAACTATGAATTTTGAGATTCAGCGTATTTTGGCCATATGCTGAGTTGCCTTTTCAACTATGTTGTTTGTATCTGCATTATATCTCTTCACACGGCACTTATCTTTTTCTTCTTTTGTTTTCATTTTCTTTCAATCATTTCATCATCTCATTGCTTTCCGGATCATGTAGGTGAAAAATTCGACGAAGCCAAAAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTATGGTTCTTACATCTCTTTCCTATCATAGACTATGTTCGCTTTCCAAAAGTAAAAGTATTTCTATTGACATTATCAATACGAAAGAAGTATATTTTCCTATTTAACTTGAAATCATTACCAAACACGATTCTGATTTTCTCGTATGCAACTAATAATTTTTCCTTCCATCCTTGTATGGAAAATATTCCTTGCTACCTATCGGACTATCTACAACCATAATTAAGCCAAGATACGGTGTTGTGTTCGTGTCACAGATTAAAAGAGACAATTGAATGAAGCCAAAAGAAATTTAACTGATATGTTTGTGAATGGTTCAGGTGTTCACTTTCGGAGTTGGTTTGATTTTTGAGACATTTTAGTTAGTTGTGGCTACTACAAGTGAATGATTAATTTGTTAACCCTGTCCTCTCTTTGTTTGCACCAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGTATATGATCCATCTACATTTGTATACATCGCATTTTGAAAATAAAAGTGTACATACATTACGTATTAGCAATGGGGAAAAGGTTTTACTTGAGATATTGACTAATTATAGCTTTGTCCTGTTTCAGGCTATAGCAGAGTTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCGGACTTTTCTGAAGACGACCTCCTTGTAAACTTACTTGCTGCAGTAGTATGTTCTTTCCTAACCTCGAAATTTCAAGAACTCCATTGGTTCCTAAAATTTTCTGGGTCTTCACTATATTGATTCATTTACATTAATCTAACAGAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGTGCGCATATATGCTCGTCGATGGGGCCTTCGATTCGGTTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGAAGAATTTTACTCTACACCTGTAAATGTCTTCTTCAATTTGTTTAATCTCAGCCCTCTTGGATGCGACTTTCAGTCGTTTTCAGCGGCCAAACGTTTGGTTAAGATGGTAAGAAAGTTGCTATGGTGTCTGAAGAAAGAAGAGAGCTTGATGATTATCTTGGGTTGAAGAGTAGTTGAAACTTGGAATCTTGCATATTCATTTGTTTTGAACTGATTCAAAGTAGCTCAGTTTTGTTGTGATTATCAGTAATCAATATTTTCACCTCATTTGATTGTTGTTT

mRNA sequence

TGCCAGAAACTCTCTTATCTCTTCCATTTTTATATTGATAGACTGCCAGAAACTTCTTCTTCTTCTCTTCGATTGACAGACTGAGCTCTTTCTTCCCCAATGACGATGGCTACTTGTAGTCCCACTATGCACTCGTCCCTTACGATGGCCCACACTTCTTCAGTTCACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCAGGCCCATGGCTGCCTCTTCCACCGCCAAAATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCAATCAATTGGGTCGACCTTAATTTTAGGAGGGAACTTAGGTATCACTTGGTTGTGGCTGCTTTGGCTGCGGAAATTGAGGTGGCTGAGGTCGTGGAAGAGAATGGAGAAGAGGGAAATGATGGATCAGCTACTTCAATTATGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAAAGGGACAGAACAAGGTCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGCAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAGCACAAAATTCGTGGAAACTGCTGAAGCCCACTTCCGATTAAACATTGATCCGAAATATAATGATCAACAGCTGAGAGCAACAGTAAATCTGCCCAAGGGAACTGGACAGACAGTCAAAGTAGCTGTTCTTACTCAAGGTGAAAAATTCGACGAAGCCAAAAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGCTATAGCAGAGTTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCGGACTTTTCTGAAGACGACCTCCTTGTAAACTTACTTGCTGCAGTAAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGTGCGCATATATGCTCGTCGATGGGGCCTTCGATTCGGTTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGAAGAATTTTACTCTACACCTGTAAATGTCTTCTTCAATTTGTTTAATCTCAGCCCTCTTGGATGCGACTTTCAGTCGTTTTCAGCGGCCAAACGTTTGGTTAAGATGGTAAGAAAGTTGCTATGGTGTCTGAAGAAAGAAGAGAGCTTGATGATTATCTTGGGTTGAAGAGTAGTTGAAACTTGGAATCTTGCATATTCATTTGTTTTGAACTGATTCAAAGTAGCTCAGTTTTGTTGTGATTATCAGTAATCAATATTTTCACCTCATTTGATTGTTGTTT

Coding sequence (CDS)

ATGACGATGGCTACTTGTAGTCCCACTATGCACTCGTCCCTTACGATGGCCCACACTTCTTCAGTTCACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCAGGCCCATGGCTGCCTCTTCCACCGCCAAAATCTTCTCTTTATGCCACCCCTTAATTCTGCAGCGCAGGGGAGGGAGGTCAATCAATTGGGTCGACCTTAATTTTAGGAGGGAACTTAGGTATCACTTGGTTGTGGCTGCTTTGGCTGCGGAAATTGAGGTGGCTGAGGTCGTGGAAGAGAATGGAGAAGAGGGAAATGATGGATCAGCTACTTCAATTATGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAAAGGGACAGAACAAGGTCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGCAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTCTAGCACAAAATTCGTGGAAACTGCTGAAGCCCACTTCCGATTAAACATTGATCCGAAATATAATGATCAACAGCTGAGAGCAACAGTAAATCTGCCCAAGGGAACTGGACAGACAGTCAAAGTAGCTGTTCTTACTCAAGGTGAAAAATTCGACGAAGCCAAAAATGCAGGAGCAGATTTGGTTGGAGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCGAATCCAAAAGCTGGCACTGTTACAACAAATATACCTCAGGCTATAGCAGAGTTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCGGACTTTTCTGAAGACGACCTCCTTGTAAACTTACTTGCTGCAGTAAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGTGCGCATATATGCTCGTCGATGGGGCCTTCGATTCGGTTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGA

Protein sequence

MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRSINWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Homology
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BLAST of Lcy05g004600 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 6.0e-125
Identity = 246/360 (68.33%), Postives = 286/360 (79.44%), Query Frame = 0 

Query: 3   MATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRSIN 62
           MAT +P    SL  A +S  + QD      F+P+  +S     SLC  L L +R    + 
Sbjct: 1   MATAAPP-SLSLCYASSSFQYQQDPSFQTHFKPLLLNS-----SLCR-LTLNQRERSCLK 60

Query: 63  WVDLNFRRELRYHL---VVAALAAEIEVAEVVEENGEEGNDGSATSIMP-KIKRGKAALP 122
           WVD   +++    +   V+AA+AAE EVA++ EE GE G  G AT   P K K+GKAALP
Sbjct: 61  WVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESG--GVATLPSPTKPKKGKAALP 120

Query: 123 LKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQ 182
           LK DRTRSKRFLEIQKLRE K+EYDLKTA+SL+KQMSSTKFVETAEAHFRLNIDPKYNDQ
Sbjct: 121 LKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQ 180

Query: 183 QLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIAS 242
           QLRATV+LPKGTG+TVK+AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+
Sbjct: 181 QLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIAT 240

Query: 243 PDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGK 302
            DMM KVASLG++LGPRGLMP PKAGTVT N+ QA+ EFK+GKVE+R DKTGIVH+PFGK
Sbjct: 241 SDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGK 300

Query: 303 ADFSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSS 359
            +F E+DLL+NL A +KSVE NKPTGAKGVYWKSAHI SSMGPSIRLNIREMLDYK PS+
Sbjct: 301 LNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351

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BLAST of Lcy05g004600 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.1e-122
Identity = 243/363 (66.94%), Postives = 290/363 (79.89%), Query Frame = 0 

Query: 3   MATCSPTMHSSLTMAH-TSSVHPQDL---PSLLSFRPMAASSTAKIFSLCHPLILQRRGG 62
           MA C+   HSSL +A+  +S   QDL   PSL SF      ++++   L  PL+L   G 
Sbjct: 1   MAACA--THSSLMLAYAAASTRSQDLTPTPSLFSF------ASSRPNHLSFPLLL-LGGS 60

Query: 63  RSINWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIM--PKIKRGKAA 122
           R      ++  R   +  +V+A+AAE ++      + EE  + +AT+++  PK K+GKAA
Sbjct: 61  RDRRCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAA 120

Query: 123 LPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYN 182
           L LKRDRTRSKRFLEIQKLRE+KKEYD+ TAISLLKQ ++T+FVE+ EAHFRLNIDPKYN
Sbjct: 121 LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN 180

Query: 183 DQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI 242
           DQQLRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLI
Sbjct: 181 DQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLI 240

Query: 243 ASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPF 302
           ASPDMM KVA LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PF
Sbjct: 241 ASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPF 300

Query: 303 GKADFSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIP 360
           GK +F+E+DLL+N LAAVKSVE NKP GAKGVYWKSAHICSSMGPSI+LNIREM+D+K P
Sbjct: 301 GKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPP 346

[Close]
BLAST of Lcy05g004600 vs. ExPASy Swiss-Prot
Match: P49208 (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL1 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 8.8e-76
Identity = 145/168 (86.31%), Postives = 156/168 (92.86%), Query Frame = 0 

Query: 110 IKRGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRL 169
           +++GK    LK DR RSKRFLEIQKLRE KKEYDLKTAISL+K+ + TKFVET EAHFRL
Sbjct: 41  LRQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRL 100

Query: 170 NIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGF 229
           NIDPKYNDQQLRATV+LPKGTG+ +KVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGF
Sbjct: 101 NIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGF 160

Query: 230 MEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEF 278
           MEFDKLIASPDMMPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEF
Sbjct: 161 MEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEF 208

[Close]
BLAST of Lcy05g004600 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.2e-75
Identity = 141/230 (61.30%), Postives = 185/230 (80.43%), Query Frame = 0 

Query: 126 SKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 185
           S+R  + Q   E+ K Y+   A++LLK++++ KF ETAEAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 186 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 245
           LPKGTG+TV+VAV+T+GEK  EA NAGAD+VG E+LIE+I  G M+F+ LIA+PDMMPKV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 246 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 305
           A LG+ LGPRGLMP+PK GTVTT++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 306 LLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKI 356
           LLVNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D K+
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]
BLAST of Lcy05g004600 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.8e-75
Identity = 139/230 (60.43%), Postives = 182/230 (79.13%), Query Frame = 0 

Query: 126 SKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVN 185
           S+R  E+Q   E  +EY    A+SLLK+ ++ KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 186 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 245
           LPKGTGQ V+VAV+ +GEK  EA NAGAD+ G E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 246 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 305
           A LGK+LGPRGLMP+PK GTVT +I  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 306 LLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKI 356
           LLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + DYK+
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234

[Close]
BLAST of Lcy05g004600 vs. ExPASy TrEMBL
Match: A0A6J1DG73 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 1.4e-188
Identity = 345/360 (95.83%), Postives = 350/360 (97.22%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MATCSPT  SSLTMAHTSSVHPQD+PSLLSFRPMAASSTA IFSLCHPL +QRRGGRS
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
           INWVDLNFRRE R HLVVAALAAEIEVAEVVEENGEEG  G ATS++PK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]
BLAST of Lcy05g004600 vs. ExPASy TrEMBL
Match: A0A5D3CGN7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00300 PE=3 SV=1)

HSP 1 Score: 653.3 bits (1684), Expect = 6.0e-184
Identity = 335/360 (93.06%), Postives = 344/360 (95.56%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MATC+PT+HSS TMAHTSSVHPQD  SLLSFRP+AASSTA IFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTVHSSFTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
            NWVDL F RE R HLVVAALAAEIEVAEVVEENGEEGN G+ATS +PKIK+GKAALPLK
Sbjct: 61  TNWVDLKFGRECRDHLVVAALAAEIEVAEVVEENGEEGNGGTATSALPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ SSTKF ETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFAETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLL+A+KSVE NKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]
BLAST of Lcy05g004600 vs. ExPASy TrEMBL
Match: A0A0A0K886 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 651.0 bits (1678), Expect = 3.0e-183
Identity = 334/360 (92.78%), Postives = 345/360 (95.83%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MATC+PT+HSSLTMAHTSSVHPQD  SLLSFRP+AASSTA IFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
           INWVDL F RE R HLVVAALAAEIEV E VEENGEEGN G+ATS++PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ SSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLL+A+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 360

[Close]
BLAST of Lcy05g004600 vs. ExPASy TrEMBL
Match: A0A6J1JXL6 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111488406 PE=3 SV=1)

HSP 1 Score: 639.0 bits (1647), Expect = 1.2e-179
Identity = 333/360 (92.50%), Postives = 342/360 (95.00%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MA  SPT+ S L MA TSSVHP DL SL + RP+AASSTA IFSLCHPLILQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
           INWVDLNFRRE R HLVVAALAAEIEVAEVV+ENGE+ NDG A SI+PKIKRGKAALPLK
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGED-NDGLAASIVPKIKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRESK+EYDLKTAISLLKQMS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKREYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]
BLAST of Lcy05g004600 vs. ExPASy TrEMBL
Match: A0A6J1KV03 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111497839 PE=3 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 1.5e-179
Identity = 331/360 (91.94%), Postives = 340/360 (94.44%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MATC P +HSSLTMAHTSSVHP DLPSLLSFRP+AASSTAKI SL HP IL+ RGG+ 
Sbjct: 1   MAMATCCPAVHSSLTMAHTSSVHPLDLPSLLSFRPIAASSTAKILSLSHPFILRSRGGKP 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
           INWVD NFRRE R HLVVAALAAEIEV E VEENGEE +  +AT I+PKIK+GKAALPLK
Sbjct: 61  INWVDFNFRRESRDHLVVAALAAEIEVPEAVEENGEEAS--TATLIVPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358

[Close]
BLAST of Lcy05g004600 vs. NCBI nr
Match: XP_022152504.1 (50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 668.7 bits (1724), Expect = 2.8e-188
Identity = 345/360 (95.83%), Postives = 350/360 (97.22%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MATCSPT  SSLTMAHTSSVHPQD+PSLLSFRPMAASSTA IFSLCHPL +QRRGGRS
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
           INWVDLNFRRE R HLVVAALAAEIEVAEVVEENGEEG  G ATS++PK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]
BLAST of Lcy05g004600 vs. NCBI nr
Match: XP_038897614.1 (50S ribosomal protein L1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 657.1 bits (1694), Expect = 8.5e-185
Identity = 340/360 (94.44%), Postives = 347/360 (96.39%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MATC+PT+HSSLTMAHTSSVHPQDL SL   RP+A SSTA IFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTVHSSLTMAHTSSVHPQDLSSL---RPIAVSSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
           INWVDLNFRRE R HLVVAALAAEIEVAEVVEENGEEGN GSATSI+PKIKRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGNGGSATSILPKIKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ S TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSITKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIR+MLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIRDMLDYKIPSSNA 357

[Close]
BLAST of Lcy05g004600 vs. NCBI nr
Match: XP_004135947.2 (50S ribosomal protein L1, chloroplastic [Cucumis sativus] >KAE8646386.1 hypothetical protein Csa_016834 [Cucumis sativus])

HSP 1 Score: 654.8 bits (1688), Expect = 4.2e-184
Identity = 336/360 (93.33%), Postives = 346/360 (96.11%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MATC+PT+HSSLTMAHTSSVHPQD  SLLSFRP+AASSTA IFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
           INWVDL F RE R HLVVAALAAEIEV E VEENGEEGN G+ATS++PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ SSTKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLL+A+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 360

[Close]
BLAST of Lcy05g004600 vs. NCBI nr
Match: KAA0058588.1 (50S ribosomal protein L1 [Cucumis melo var. makuwa] >TYK10388.1 50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 653.3 bits (1684), Expect = 1.2e-183
Identity = 335/360 (93.06%), Postives = 344/360 (95.56%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MATC+PT+HSS TMAHTSSVHPQD  SLLSFRP+AASSTA IFSLCHPLILQRRGGRS
Sbjct: 1   MAMATCNPTVHSSFTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
            NWVDL F RE R HLVVAALAAEIEVAEVVEENGEEGN G+ATS +PKIK+GKAALPLK
Sbjct: 61  TNWVDLKFGRECRDHLVVAALAAEIEVAEVVEENGEEGNGGTATSALPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ SSTKF ETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFAETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLL+A+KSVE NKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360

[Close]
BLAST of Lcy05g004600 vs. NCBI nr
Match: XP_023549332.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 641.0 bits (1652), Expect = 6.3e-180
Identity = 335/360 (93.06%), Postives = 342/360 (95.00%), Query Frame = 0 

Query: 1   MTMATCSPTMHSSLTMAHTSSVHPQDLPSLLSFRPMAASSTAKIFSLCHPLILQRRGGRS 60
           M MA  SPT+ S L MA TSSVHP DL SL + RP+AASSTA IFSLCHPLILQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAALPLK 120
           INWVDLNFRRE R HLVVAALAAEIEVAEVV+ENGEE NDG A SI+PKIKRGKAALPLK
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEE-NDGLAASIVPKIKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 360
           FSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA
Sbjct: 301 FSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPSSNA 359

[Close]
BLAST of Lcy05g004600 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 440.3 bits (1131), Expect = 1.5e-123
Identity = 243/363 (66.94%), Postives = 290/363 (79.89%), Query Frame = 0 

Query: 3   MATCSPTMHSSLTMAH-TSSVHPQDL---PSLLSFRPMAASSTAKIFSLCHPLILQRRGG 62
           MA C+   HSSL +A+  +S   QDL   PSL SF      ++++   L  PL+L   G 
Sbjct: 1   MAACA--THSSLMLAYAAASTRSQDLTPTPSLFSF------ASSRPNHLSFPLLL-LGGS 60

Query: 63  RSINWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIM--PKIKRGKAA 122
           R      ++  R   +  +V+A+AAE ++      + EE  + +AT+++  PK K+GKAA
Sbjct: 61  RDRRCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAA 120

Query: 123 LPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYN 182
           L LKRDRTRSKRFLEIQKLRE+KKEYD+ TAISLLKQ ++T+FVE+ EAHFRLNIDPKYN
Sbjct: 121 LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN 180

Query: 183 DQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI 242
           DQQLRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLI
Sbjct: 181 DQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLI 240

Query: 243 ASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPF 302
           ASPDMM KVA LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PF
Sbjct: 241 ASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPF 300

Query: 303 GKADFSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIP 360
           GK +F+E+DLL+N LAAVKSVE NKP GAKGVYWKSAHICSSMGPSI+LNIREM+D+K P
Sbjct: 301 GKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPP 346

[Close]
BLAST of Lcy05g004600 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-80
Identity = 180/302 (59.60%), Postives = 220/302 (72.85%), Query Frame = 0 

Query: 3   MATCSPTMHSSLTMAH-TSSVHPQDL---PSLLSFRPMAASSTAKIFSLCHPLILQRRGG 62
           MA C+   HSSL +A+  +S   QDL   PSL SF      ++++   L  PL+L   G 
Sbjct: 1   MAACA--THSSLMLAYAAASTRSQDLTPTPSLFSF------ASSRPNHLSFPLLL-LGGS 60

Query: 63  RSINWVDLNFRRELRYHLVVAALAAEIEVAEVVEENGEEGNDGSATSIM--PKIKRGKAA 122
           R      ++  R   +  +V+A+AAE ++      + EE  + +AT+++  PK K+GKAA
Sbjct: 61  RDRRCAAID--RASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAA 120

Query: 123 LPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYN 182
           L LKRDRTRSKRFLEIQKLRE+KKEYD+ TAISLLKQ ++T+FVE+ EAHFRLNIDPKYN
Sbjct: 121 LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN 180

Query: 183 DQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLI 242
           DQQLRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLI
Sbjct: 181 DQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLI 240

Query: 243 ASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPF 299
           ASPDMM KVA LGK+LGPRGLMPNPKAGTVT NIPQ+    ++GK+     K G+     
Sbjct: 241 ASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHL 282

[Close]
BLAST of Lcy05g004600 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-39
Identity = 109/318 (34.28%), Postives = 172/318 (54.09%), Query Frame = 0 

Query: 60  SINWVDLNFRRELRY---HLVVAALAAEIEVAEVVEENGEEGNDGSATSIMPKIKRGKAA 119
           S NW     R E+RY      +  ++    VA + E+     N+G  T    +++R +  
Sbjct: 93  SANWT----REEIRYVKDSPSINPVSYAQRVAPLPEDRVAGENEGDRTP--EEMERERKR 152

Query: 120 LPLKRDRTRSKRFLEIQKLRE------------------SKKEYDLKTAISLLKQMSSTK 179
           + L+ +R R +RFL    + E                   K  +DL  AI  +K  +  K
Sbjct: 153 IELE-NRAR-RRFLRANAVEEDTSSLPLPTLLKPELKHGKKPIFDLMEAIREIKGNAKAK 212

Query: 180 FVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGG 239
           F ET EAH RL I+   ++  +R T+ LP    + VKVA   +G   ++AK AGAD+VGG
Sbjct: 213 FDETLEAHVRLGIEKGRSELIVRGTLALPHSVKKDVKVAFFAEGADAEDAKAAGADVVGG 272

Query: 240 EDLIEQI-KGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEF 299
            +LIE+I K G ++FD+ +A+P MMP+V  + ++L   GLMPNPK G+VT ++ +A+ + 
Sbjct: 273 LELIEEILKSGKIDFDRCLATPKMMPRVYKISRILNNHGLMPNPKQGSVTKDVTKAVKDA 332

Query: 300 KQGKVEYRADKTGIVHLPFGKADFSEDDLLVNLLAAVKSVEVNKPTGAKGV-----YWKS 351
           K G  ++R DKT I+H+P GK  FSE+ L  N+ A + ++ + KP G K       Y  +
Sbjct: 333 KAGHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNA 392

The following BLAST results are available for this feature:
BLAST of Lcy05g004600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LE956.0e-12568.3350S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=... [more]
Q9LY662.1e-12266.9450S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ... [more]
P492088.8e-7686.3150S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=R... [more]
B0JNQ51.2e-7561.3050S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G... [more]
Q3MA189.8e-7560.4350S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)... [more]
BLAST of Lcy05g004600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DG731.4e-18895.83Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1[more]
A0A5D3CGN76.0e-18493.06Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00... [more]
A0A0A0K8863.0e-18392.78Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1[more]
A0A6J1JXL61.2e-17992.50Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111488406 PE=3 SV=1[more]
A0A6J1KV031.5e-17991.94Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111497839 PE=3 SV=1[more]
BLAST of Lcy05g004600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152504.12.8e-18895.8350S ribosomal protein L1, chloroplastic-like [Momordica charantia][more]
XP_038897614.18.5e-18594.4450S ribosomal protein L1, chloroplastic-like [Benincasa hispida][more]
XP_004135947.24.2e-18493.3350S ribosomal protein L1, chloroplastic [Cucumis sativus] >KAE8646386.1 hypothet... [more]
KAA0058588.11.2e-18393.0650S ribosomal protein L1 [Cucumis melo var. makuwa] >TYK10388.1 50S ribosomal pr... [more]
XP_023549332.16.3e-18093.0650S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lcy05g004600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G63490.11.5e-12366.94Ribosomal protein L1p/L10e family [more]
AT3G63490.21.2e-8059.60Ribosomal protein L1p/L10e family [more]
AT2G42710.12.3e-3934.28Ribosomal protein L1p/L10e family [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 189..280
e-value: 6.4E-83
score: 279.3
NoneNo IPR availableGENE3D3.30.190.20coord: 142..345
e-value: 6.4E-83
score: 279.3
NoneNo IPR availablePANTHERPTHR23105:SF110MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGEcoord: 139..352
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 139..352
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 151..341
e-value: 1.9E-47
score: 161.7
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 144..345
e-value: 6.35389E-73
score: 223.6
IPR005878Ribosomal protein L1, bacterial-typeTIGRFAMTIGR01169TIGR01169coord: 125..349
e-value: 3.6E-94
score: 312.3
IPR005878Ribosomal protein L1, bacterial-typeHAMAPMF_01318_BRibosomal_L1_Bcoord: 120..350
score: 39.544277
IPR023673Ribosomal protein L1, conserved sitePROSITEPS01199RIBOSOMAL_L1coord: 242..260
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 128..347

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g004600.1Lcy05g004600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000470 maturation of LSU-rRNA
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding