Lcy05g004080 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g004080
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	60S ribosomal protein L6
Location	Chr05: 3672741 .. 3674570 (+)
RNA-Seq Expression	Lcy05g004080
Synteny	Lcy05g004080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGCAGTAGTCTTCTTTCTCATTGCGAAGAAGAGCACCAGGTTCTCGCAGAGACACGCTAATGGCGCCCAAAACCCGTAGAGTTACCAGAAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGCGGTGTATTCCCTCGTCACGATGCCAAGCCGAAAGCTGATGCCCCAGCCGAGAAGCCGCCCAAGTTTTACCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGGCTCACGAAGCTGAGGTATGGTGAATCCATTTGTTTGTATGATATTCCTAAAAATTTTTGTTCTGCTTGATTTTTGTGCATTGAAGACTTACTTGTTTTCCGGTCGAGAAGTTTATCAAAGTGCTATTTGATGAAATCTGGTTGTGCGATTCATGATAACTCAATCCTCTGCTGCTGTTTTGTTTCACTGGTAGATATATCTTGTTCAGGGAATGCTTTTCTAATTTTGTTCTATTCATGATTTTAGAGCCAGCATTACTCCTGGTACTGTATTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTCTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGTGAGTTCCCTTTTTTCCTCACCGAATTGGCCAGGCCATACGACTATCTAGTGGTGAAATTCTGACGATTGTTTCTTGCCTTTTGATGTTGATTTCTATGTTATTTCACTGCCCTTTTACACTGTCTTTATTTGATTTTTGATTGAGAGACTAATATTGGAATTTGTTGCCATGTTTTGGTCTCACTTGTTGCTTTTACTACCCTGTAATATATCTGGCTTTTGGAAGTGGTATGTAGTTATTCTTCTAAGCAATAAGTCTTTGACGAAGTATAAGTTAATTCCTTGCTGCCAACTTGAATTATTTCTTATATGTAATGTTTGCATTTTAAAAGTTTTCGTGCGATTCAGTTTGGTTTAGCGTCCTTGAAAATAGCACAACCTGAAGCGCAAAATACTTGTAAAAATATGAACGTTTGTCTTTACTTCAGTCTGTGAGTGCATCTGCTGAGGAATTTCTTATATTGTTTACTTTCAATCAGAAATAATGGAAGTTGATTCATTCTGTCTATCGCTTGTTATTTCAAAATGTATTCATACGAGAAGTTGTAGCAGTAATCCTTTTCTATTTACTTGGAAGTTGAATCTTTTGTTGCTGAAGCTTGGATTTAACGTTTCATTTGAGTGGTTTATGTGTAGAACACCAACCCAAGTCAGCTTCTGTTTTCTTATGAAAATGGGTATGCTTTTTAAACTGTACTATAACATGTTCTTTATGATTATAGGACCTTTCAAGATTAATGGTGTTCCTCTAAGGCGGGTGAACCAATCGTACGTGATTGCAACCTCCACCAAAGTTGACATCTCTGGAGTTAACGCAGAAAAGTTCGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGAGTGAAGGCGAATTCTTCGAAGCAGAGAAAGAGGTATGAGGACCTGGATTATACCTCTATGCCTCATCACTGTAGTTGTTTTAGCTGTTCTAATTTTTCGATTCGAACTTCTTATTGTAGGAGAAAAGTGCTCTCCCAGCTGAGAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCAGAGTTGAAGGCTTACTTGGCAGCCAGATTTTCTCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAGATAAGGATTTGTTTTTTTTTTTTTTTTTTT

mRNA sequence

CTGGCAGTAGTCTTCTTTCTCATTGCGAAGAAGAGCACCAGGTTCTCGCAGAGACACGCTAATGGCGCCCAAAACCCGTAGAGTTACCAGAAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGCGGTGTATTCCCTCGTCACGATGCCAAGCCGAAAGCTGATGCCCCAGCCGAGAAGCCGCCCAAGTTTTACCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGGCTCACGAAGCTGAGAGCCAGCATTACTCCTGGTACTGTATTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTCTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGACCTTTCAAGATTAATGGTGTTCCTCTAAGGCGGGTGAACCAATCGTACGTGATTGCAACCTCCACCAAAGTTGACATCTCTGGAGTTAACGCAGAAAAGTTCGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGAGTGAAGGCGAATTCTTCGAAGCAGAGAAAGAGGAGAAAAGTGCTCTCCCAGCTGAGAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCAGAGTTGAAGGCTTACTTGGCAGCCAGATTTTCTCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAGATAAGGATTTGTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCGCCCAAAACCCGTAGAGTTACCAGAAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGCGGTGTATTCCCTCGTCACGATGCCAAGCCGAAAGCTGATGCCCCAGCCGAGAAGCCGCCCAAGTTTTACCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGGCTCACGAAGCTGAGAGCCAGCATTACTCCTGGTACTGTATTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTCTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGACCTTTCAAGATTAATGGTGTTCCTCTAAGGCGGGTGAACCAATCGTACGTGATTGCAACCTCCACCAAAGTTGACATCTCTGGAGTTAACGCAGAAAAGTTCGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGAGTGAAGGCGAATTCTTCGAAGCAGAGAAAGAGGAGAAAAGTGCTCTCCCAGCTGAGAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCAGAGTTGAAGGCTTACTTGGCAGCCAGATTTTCTCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAG

Protein sequence

MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPPKFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF

Homology

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BLAST of Lcy05g004080 vs. ExPASy Swiss-Prot
Match: Q9FZ76 (60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 7.1e-103
Identity = 191/230 (83.04%), Postives = 205/230 (89.13%), Query Frame = 0


Query: 2   APKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPPK 61
           A +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+PK DAP EKP K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKEE 181
           FKINGVPLRRVNQ+YVI TSTK+DISGVN EKFDDKYF K  +KKKKK+EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           K  +P EKK+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHELVF
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

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BLAST of Lcy05g004080 vs. ExPASy Swiss-Prot
Match: Q9C9C5 (60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.0e-101
Identity = 191/228 (83.77%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 4   KTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP EKPPKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKVDISGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Lcy05g004080 vs. ExPASy Swiss-Prot
Match: Q9C9C6 (60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.0e-101
Identity = 190/228 (83.33%), Postives = 202/228 (88.60%), Query Frame = 0


Query: 4   KTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP EKPPKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKVDISGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Lcy05g004080 vs. ExPASy Swiss-Prot
Match: P34091 (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.3e-100
Identity = 189/232 (81.47%), Postives = 205/232 (88.36%), Query Frame = 0


Query: 2   APKTRR--VTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKP 61
           A K R+  V+RNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  K       EKP
Sbjct: 3   AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKP 62

Query: 62  PKFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVT 121
           PKFYPADDVKKPL+NKRK + TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVT
Sbjct: 63  PKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVT 122

Query: 122 GPFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEK 181
           GPFK+NGVPLRRVNQ+YVIATSTKVDISGVN EKFDDKYF K+ +KK KK EGEFFEAEK
Sbjct: 123 GPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEK 182

Query: 182 EEKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           +E + LP EKKDDQKAVD  L+K+IEGVPELKAYL ARFSLKAGMKPHELVF
Sbjct: 183 KEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

[Close]

BLAST of Lcy05g004080 vs. ExPASy Swiss-Prot
Match: Q2YGT9 (60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3)

HSP 1 Score: 190.3 bits (482), Expect = 2.5e-47
Identity = 114/245 (46.53%), Postives = 154/245 (62.86%), Query Frame = 0


Query: 9   TRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKP--------- 68
           +RNP L+RG+G+YSRS MY ++ L+  K            K +  A   KP         
Sbjct: 41  SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT 100

Query: 69  --------PKFYPADDVKKPLVNKRK----ARLTKLRASITPGTVLIILAGRFKGKRVVF 128
                   P++YP +DV + L++  K      + KLRASITPGT+LIIL GR +GKRV+F
Sbjct: 101 RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIF 160

Query: 129 LKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDISGVN-AEKFDDKYFSKEVQKK 188
           LKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DISGV   E   D YF K+  +K
Sbjct: 161 LKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRK 220

Query: 189 KKKSEGEFFEAEKEEKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKP 232
            +  EGE F+ EK EK  +  ++K DQKAVD+ +++ I+ VP+L+ YL + F+L  G+ P
Sbjct: 221 PRHQEGEIFDTEK-EKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYP 280

[Close]

BLAST of Lcy05g004080 vs. ExPASy TrEMBL
Match: A0A6J1JS55 (60S ribosomal protein L6-1-like OS=Cucurbita maxima OX=3661 GN=LOC111488421 PE=3 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.8e-118
Identity = 225/231 (97.40%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKVDISGVNAEKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPA++KDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lcy05g004080 vs. ExPASy TrEMBL
Match: A0A1S3CEA6 (60S ribosomal protein L6 OS=Cucumis melo OX=3656 GN=LOC103499900 PE=3 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 6.9e-117
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKA  PAEKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAAVPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKA+LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKVDISGVN+EKFDDKYFSKE QKKKKKSEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEAQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPAEKKDDQKAVDTPLIKSIE VPELKAYL ARFSLKAGMKPHELVF
Sbjct: 181 EKSALPAEKKDDQKAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Lcy05g004080 vs. ExPASy TrEMBL
Match: A0A6J1H5C5 (60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111460710 PE=3 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.2e-116
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PKADA  EKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKV+ISGVN EKFDDKYFSKEVQKKKKKSEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPA+KKDDQKAVDTPLIKSIEGVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231

[Close]

BLAST of Lcy05g004080 vs. ExPASy TrEMBL
Match: A0A6J1GSP4 (60S ribosomal protein L6-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456610 PE=3 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.5e-116
Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAK KADAPAEK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKVDISGVNAEKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPA++KDDQKAVDTPLIKSI+GVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIDGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lcy05g004080 vs. ExPASy TrEMBL
Match: A0A0A0K9V0 (60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_7G428940 PE=3 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PKA APAEKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKAAAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKA+LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKVDISGVN+EKFDDKYFSKE QKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEAQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPAEKKDDQKAVDTPLIKSIE VPELKAYL ARFSLKAGMKPHELVF
Sbjct: 181 EKSALPAEKKDDQKAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Lcy05g004080 vs. NCBI nr
Match: XP_022991926.1 (60S ribosomal protein L6-1-like [Cucurbita maxima])

HSP 1 Score: 433.7 bits (1114), Expect = 9.8e-118
Identity = 225/231 (97.40%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKVDISGVNAEKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPA++KDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lcy05g004080 vs. NCBI nr
Match: XP_008461261.1 (PREDICTED: 60S ribosomal protein L6-1 [Cucumis melo])

HSP 1 Score: 429.9 bits (1104), Expect = 1.4e-116
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKA  PAEKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAAVPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKA+LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKVDISGVN+EKFDDKYFSKE QKKKKKSEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEAQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPAEKKDDQKAVDTPLIKSIE VPELKAYL ARFSLKAGMKPHELVF
Sbjct: 181 EKSALPAEKKDDQKAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Lcy05g004080 vs. NCBI nr
Match: XP_022959727.1 (60S ribosomal protein L6-1-like [Cucurbita moschata] >XP_023513505.1 60S ribosomal protein L6-1-like [Cucurbita pepo subsp. pepo] >KAG6593324.1 60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025671.1 60S ribosomal protein L6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 429.1 bits (1102), Expect = 2.4e-116
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PKADA  EKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKV+ISGVN EKFDDKYFSKEVQKKKKKSEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPA+KKDDQKAVDTPLIKSIEGVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231

[Close]

BLAST of Lcy05g004080 vs. NCBI nr
Match: XP_022954334.1 (60S ribosomal protein L6-3-like [Cucurbita moschata])

HSP 1 Score: 428.7 bits (1101), Expect = 3.2e-116
Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAK KADAPAEK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKVDISGVNAEKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPA++KDDQKAVDTPLIKSI+GVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIDGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Lcy05g004080 vs. NCBI nr
Match: XP_011659463.1 (60S ribosomal protein L6-1 [Cucumis sativus] >KGN45157.1 hypothetical protein Csa_015877 [Cucumis sativus])

HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60
           MAPKT RVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PKA APAEKPP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKAAAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKA+LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180
           PFKINGVPLRRVNQSYVIATSTKVDISGVN+EKFDDKYFSKE QKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEAQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPAEKKDDQKAVDTPLIKSIE VPELKAYL ARFSLKAGMKPHELVF
Sbjct: 181 EKSALPAEKKDDQKAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Lcy05g004080 vs. TAIR 10
Match: AT1G18540.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 374.8 bits (961), Expect = 5.0e-104
Identity = 191/230 (83.04%), Postives = 205/230 (89.13%), Query Frame = 0


Query: 2   APKTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPPK 61
           A +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+PK DAP EKP K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKEE 181
           FKINGVPLRRVNQ+YVI TSTK+DISGVN EKFDDKYF K  +KKKKK+EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           K  +P EKK+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHELVF
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of Lcy05g004080 vs. TAIR 10
Match: AT1G74050.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 370.9 bits (951), Expect = 7.3e-103
Identity = 191/228 (83.77%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 4   KTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP EKPPKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKVDISGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Lcy05g004080 vs. TAIR 10
Match: AT1G74060.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 369.4 bits (947), Expect = 2.1e-102
Identity = 190/228 (83.33%), Postives = 202/228 (88.60%), Query Frame = 0


Query: 4   KTRRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP EKPPKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKVDISGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPAEKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

The following BLAST results are available for this feature:

BLAST of Lcy05g004080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ76	7.1e-103	83.04	60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1	[more]
Q9C9C5	1.0e-101	83.77	60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1	[more]
Q9C9C6	3.0e-101	83.33	60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1	[more]
P34091	3.3e-100	81.47	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 S...	[more]
Q2YGT9	2.5e-47	46.53	60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3	[more]

BLAST of Lcy05g004080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JS55	4.8e-118	97.40	60S ribosomal protein L6-1-like OS=Cucurbita maxima OX=3661 GN=LOC111488421 PE=3...	[more]
A0A1S3CEA6	6.9e-117	96.54	60S ribosomal protein L6 OS=Cucumis melo OX=3656 GN=LOC103499900 PE=3 SV=1	[more]
A0A6J1H5C5	1.2e-116	96.10	60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111460710 PE=3 SV=1	[more]
A0A6J1GSP4	1.5e-116	96.54	60S ribosomal protein L6-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456610 PE...	[more]
A0A0A0K9V0	2.0e-116	96.10	60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_7G428940 PE=3 SV=1	[more]

BLAST of Lcy05g004080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991926.1	9.8e-118	97.40	60S ribosomal protein L6-1-like [Cucurbita maxima]	[more]
XP_008461261.1	1.4e-116	96.54	PREDICTED: 60S ribosomal protein L6-1 [Cucumis melo]	[more]
XP_022959727.1	2.4e-116	96.10	60S ribosomal protein L6-1-like [Cucurbita moschata] >XP_023513505.1 60S ribosom...	[more]
XP_022954334.1	3.2e-116	96.54	60S ribosomal protein L6-3-like [Cucurbita moschata]	[more]
XP_011659463.1	4.1e-116	96.10	60S ribosomal protein L6-1 [Cucumis sativus] >KGN45157.1 hypothetical protein Cs...	[more]

BLAST of Lcy05g004080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18540.1	5.0e-104	83.04	Ribosomal protein L6 family protein	[more]
AT1G74050.1	7.3e-103	83.77	Ribosomal protein L6 family protein	[more]
AT1G74060.1	2.1e-102	83.33	Ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 85..170 e-value: 1.5E-17 score: 65.3
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 124..231 e-value: 4.3E-40 score: 136.8
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR000915	60S ribosomal protein L6E	PROSITE	PS01170	RIBOSOMAL_L6E	coord: 125..143
IPR005568	Ribosomal protein L6, N-terminal	PFAM	PF03868	Ribosomal_L6e_N	coord: 5..59 e-value: 8.7E-16 score: 57.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..67
None	No IPR available	PANTHER	PTHR10715:SF9	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR041997	Ribosomal Protein L6, KOW domain	CDD	cd13156	KOW_RPL6	coord: 79..231 e-value: 4.41847E-81 score: 237.446
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 85..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g004080.1	Lcy05g004080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome