Lcy05g002750 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g002750
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 2529795 .. 2531724 (+)
RNA-Seq ExpressionLcy05g002750
SyntenyLcy05g002750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACGAATGAGACGAAATTGTGTGCCCAAAACGGACATACAAGTGATCCCGTGTGACGCGAGGATGCAGAAACAGATCCAGGTGATGAAATCATGCGGTGACAGGCCAACCACCTCGAGAATTGTTCTGTGATAGAGCGAATCAGAACCGTTGATCTATGACGTGATGTGATGTTGAGAATAAAGGATTTGGTAGTGTTATGATGCAGGGGATAAAATCCGGAGCATCGTACGATGCAACATGTGAAGAGGAAGAGGAAGAGGAAGGCAGAGGGGTTTTAGCCAGAAATGTAACGTCGGAATCAACCTCGGGTTCTGCTATATGCCATTGGATACGCACAGGTGAGCTTGCAAGAATGTTTTTCTTTTTTTGGCAAAATGTTTTTTAATTACTTATTAAATTACAAATTTACTTTCTAGATCATTGAGTAAGTAACAAGCGTATAATAGAATTCTAAACTTTCGATTTTATGTTTAACAGATCTTTGAATTTTTTGTATTTGATTGGTTATTGCAGTTTTGAAATGTCCGATAGATCTCTCAACTGTCAATTTTGTGTCTAGTAGATTGTTGATTTATTTGGATATTTTTTAAAATCTATTGGTGTATTAAATACAAAATTGAAAAGTCGAGGTTTTGTTGGAGACAAATTTCAATTTTGTGTCTGATACATTTGTGAATTTTAAAAAATGTTAAATAAGTTATTGACTCGTTGAACAAAAAAATTGGGAGTTCACATAAAGTTAAAGGATTTGTTAAATGTTTTTAAACTTTAAGGGCTACAAAAACACTTTTTAAATTTCACAAATCTATGAAAGACAACTTTGAAAACTTAGCCCTCGTTTGATAACCATTTGGTTTTTGAAAATTATGTTTGTTTTCTCCTAAATTTCCTATTATGGCTTTCATCTTAGTTAAGATTGCATTTGAATTTCTAGCCAAATTTTAAAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTTCCCAAAATTGGACTTGATTTTTGAAAACAAGGTAGAAGATTGATACTAAAACCAAGAAATTTATAGGTGGAAGTATGTGAGTATAAATTTAATTTTCAAAAACCAAATGGTTATCAAACGGGGCGTTAGAGATTGAACTTAGAAATTTCATATGGCTATTTAATTTCATTTTAGTTGCTACGCACAAATGGTCCATTTACTAGTTTCGAAGAAAAAAAAAATCGATTTACTTTTAACTTTTATTCATTTTGGCCACTATTGAAATAACTAGTGGTTGATAATGATTTTTTCAATAATCCTCTCAAAAGGTGATTAAATATTAAAAAGAAAATTATAAAGTGATTGGACGCAGTGAATCATTTTAATTTTCTTTGTTTAAGTTTTCATATTAGAAACATTCTAGAATTCAAATGAAAATATCTAAATGACGTTGAAATTACAAAATTTTCCAACAATTTGAAGTCTCTCCTCTCCTCGGTTTCTGAGCCCCCTTCGACTGGAGGGGGAATTATTTTGAGGAACTAGAATCATGAAGTGATGGCGGCGTCGACTATTTCCGCTGATATTCCCTTTGAAGTTCACCAAGCCAAATTATGGGCCATCTTTGAAGGACTAAAGTAAAGTTCGCAGTGTCTTTGGACTGCTCAAATATTATCGTGGAATCTGATTGTTTGTGGGCTGTGAAATTCCTTAAGAGAGAAGTTGGGCCCTGGAGTGATGTTCAGACTTTGGTAGAGTCTATTTGGAGCCTAATGCCTTGTTTTGATGATATTCAATTTGTTTTAATCCTTAAAAGATGTAATAAGGTTGCTGATTTGATAGCTAGAAGAGCTAGGATGTCTAGATCGTGTGAAACTTGGGTTTCTCATATCCCGAGTTGGATTTGCTCGTTGGTTGATTTAGACAGTTCAGTTTTTGCCCCTTGTGGCGTTATAATATTTTAG

mRNA sequence

ATGAGACGAATGAGACGAAATTGTGTGCCCAAAACGGACATACAAGTGATCCCGTGTGACGCGAGGATGCAGAAACAGATCCAGGGGATAAAATCCGGAGCATCGTACGATGCAACATGTGAAGAGGAAGAGGAAGAGGAAGGCAGAGGGGTTTTAGCCAGAAATGTAACGTCGGAATCAACCTCGGGTTCTGCTATATGCCATTGGATACGCACAGTGTCTTTGGACTGCTCAAATATTATCGTGGAATCTGATTGTTTGTGGGCTGTGAAATTCCTTAAGAGAGAAGTTGGGCCCTGGAGTGATGTTCAGACTTTGGTAGAGTCTATTTGGAGCCTAATGCCTTGTTTTGATGATATTCAATTTGTTTTAATCCTTAAAAGATGTAATAAGGTTGCTGATTTGATAGCTAGAAGAGCTAGGATGTCTAGATCGTGTGAAACTTGGGTTTCTCATATCCCGAGTTGGATTTGCTCGTTGGTTGATTTAGACAGTTCAGTTTTTGCCCCTTGTGGCGTTATAATATTTTAG

Coding sequence (CDS)

ATGAGACGAATGAGACGAAATTGTGTGCCCAAAACGGACATACAAGTGATCCCGTGTGACGCGAGGATGCAGAAACAGATCCAGGGGATAAAATCCGGAGCATCGTACGATGCAACATGTGAAGAGGAAGAGGAAGAGGAAGGCAGAGGGGTTTTAGCCAGAAATGTAACGTCGGAATCAACCTCGGGTTCTGCTATATGCCATTGGATACGCACAGTGTCTTTGGACTGCTCAAATATTATCGTGGAATCTGATTGTTTGTGGGCTGTGAAATTCCTTAAGAGAGAAGTTGGGCCCTGGAGTGATGTTCAGACTTTGGTAGAGTCTATTTGGAGCCTAATGCCTTGTTTTGATGATATTCAATTTGTTTTAATCCTTAAAAGATGTAATAAGGTTGCTGATTTGATAGCTAGAAGAGCTAGGATGTCTAGATCGTGTGAAACTTGGGTTTCTCATATCCCGAGTTGGATTTGCTCGTTGGTTGATTTAGACAGTTCAGTTTTTGCCCCTTGTGGCGTTATAATATTTTAG

Protein sequence

MRRMRRNCVPKTDIQVIPCDARMQKQIQGIKSGASYDATCEEEEEEEGRGVLARNVTSESTSGSAICHWIRTVSLDCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDSSVFAPCGVIIF
Homology
BLAST of Lcy05g002750 vs. ExPASy TrEMBL
Match: A0A0J8BAU9 (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_7g179330 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 40/151 (26.49%), Postives = 68/151 (45.03%), Query Frame = 0

Query: 37  DATCEEEEEEEGRGVLARNVTSESTSGSAICHWIRTVSLD-------------------- 96
           DA    E    G G++AR+      +G  +  W RT+S D                    
Sbjct: 665 DAAVNGEYCRVGLGMVARD-----ENGQVLRAWSRTMSHDWPAEKAEAAAVLWATEEAIA 724

Query: 97  --CSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVAD 156
              SN+++ESD    +  +   +    D+Q ++E + +L+P F+ I+F    + CN++A 
Sbjct: 725 QGWSNVVLESDAQVIINAINSRLQRRGDIQAMLEDVLNLVPSFETIKFSFCYRECNEIAH 784

Query: 157 LIARRARMSRSCETWVSHIPSWICSLVDLDS 166
            +A+ A  +   E W+   PSWI  L+  DS
Sbjct: 785 RLAKWATSNFCDEVWLVGGPSWIADLIVSDS 810

BLAST of Lcy05g002750 vs. NCBI nr
Match: KMS97072.1 (hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-05
Identity = 40/151 (26.49%), Postives = 68/151 (45.03%), Query Frame = 0

Query: 37  DATCEEEEEEEGRGVLARNVTSESTSGSAICHWIRTVSLD-------------------- 96
           DA    E    G G++AR+      +G  +  W RT+S D                    
Sbjct: 665 DAAVNGEYCRVGLGMVARD-----ENGQVLRAWSRTMSHDWPAEKAEAAAVLWATEEAIA 724

Query: 97  --CSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVAD 156
              SN+++ESD    +  +   +    D+Q ++E + +L+P F+ I+F    + CN++A 
Sbjct: 725 QGWSNVVLESDAQVIINAINSRLQRRGDIQAMLEDVLNLVPSFETIKFSFCYRECNEIAH 784

Query: 157 LIARRARMSRSCETWVSHIPSWICSLVDLDS 166
            +A+ A  +   E W+   PSWI  L+  DS
Sbjct: 785 RLAKWATSNFCDEVWLVGGPSWIADLIVSDS 810

BLAST of Lcy05g002750 vs. NCBI nr
Match: XP_021839114.1 (uncharacterized protein LOC110778879 [Spinacia oleracea])

HSP 1 Score: 58.2 bits (139), Expect = 8.5e-05
Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 79  NIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVADLIAR 138
           +I++E D    ++ LK      S VQ +VE   S+MP FD I F    + C++VA  +A+
Sbjct: 96  DIVLEGDACTIIRALKGSQQRGSHVQLMVEDARSIMPSFDSISFSFCFRECDEVAHRLAK 155

Query: 139 RARMSRSCETWVSHIPSWICSLVDLDSSVF 169
           +A  + S E W+   P WI  ++  D+  F
Sbjct: 156 QAVSNFSDEVWLDGGPLWISDVLVFDTPDF 185

BLAST of Lcy05g002750 vs. NCBI nr
Match: XP_030923213.1 (uncharacterized protein LOC115950104 [Quercus lobata])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 29/89 (32.58%), Postives = 47/89 (52.81%), Query Frame = 0

Query: 76  DCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVADL 135
           D  NII E D +  +  + +E    +    +V++I SL+  F   QFV + + CN VAD 
Sbjct: 294 DLQNIIFEGDSVLVINAIVQENPVLTSYGDIVDNIRSLVSVFQSFQFVFVHQSCNVVADA 353

Query: 136 IARRARMSRSCETWVSHIPSWICSLVDLD 165
           +A++A+       W+  +P+ I  LVD D
Sbjct: 354 LAKKAKCLAGYREWLGDLPTNISQLVDFD 382

BLAST of Lcy05g002750 vs. NCBI nr
Match: KAF7135826.1 (hypothetical protein RHSIM_Rhsim08G0064500 [Rhododendron simsii])

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-04
Identity = 40/157 (25.48%), Postives = 64/157 (40.76%), Query Frame = 0

Query: 28  QGIKSGASYDATCEEEEEEEGR--------GVLARNVTSESTSGSAIC----HWIRTV-- 87
           Q  +SG   D   ++   E  R        G +A    +    GS +C     W   +  
Sbjct: 25  QATESGEQVDIRLQDTSSERSRGYWERPDHGFVAARAANLGMMGSVLCAEAGAWRAALEF 84

Query: 88  --SLDCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNK 147
             +LD   I+VE D    V+ L R++   +DV+ ++E I  L   F    F  + +  N 
Sbjct: 85  AYALDIRTIVVEGDSQQVVRILNRDILCLTDVEVIIEDIRGLAGRFVSCLFRFVRRSANV 144

Query: 148 VADLIARRARMSRSCETWVSHIPSWICSLVDLDSSVF 169
           VAD +A         +TW +  PSW+   +  D  +F
Sbjct: 145 VADTLASHGVRGSGSKTWEARPPSWLLRSLGQDDHLF 181

BLAST of Lcy05g002750 vs. NCBI nr
Match: XP_030957684.1 (uncharacterized protein LOC115979763 [Quercus lobata])

HSP 1 Score: 55.1 bits (131), Expect = 7.2e-04
Identity = 35/147 (23.81%), Postives = 65/147 (44.22%), Query Frame = 0

Query: 35  SYDATCEEEEEEEGRGVLARN----VTSESTSGSAICHWIR-------------TVSLDC 94
           ++DAT      + G GV+ RN    V    +S   + H +               + L  
Sbjct: 235 NFDATVFRRLSKAGIGVIIRNNAGEVEGALSSSIPMAHSVADLEALACLKAVQFALELGI 294

Query: 95  SNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVADLIA 154
           + ++ E D    +  L   VG ++    +++ I  L   F  ++F  + + CN VAD +A
Sbjct: 295 TRVVFEGDSAVIINALLHGVGAFATFNNILDDICMLSTVFQFVEFSFVNRHCNSVADALA 354

Query: 155 RRARMSRSCETWVSHIPSWICSLVDLD 165
           ++A++    + W+  +P+ I  LV LD
Sbjct: 355 KKAKLIVGAQVWLHDVPADIAPLVSLD 381

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0J8BAU91.1e-0526.49Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_7g17933... [more]
Match NameE-valueIdentityDescription
KMS97072.12.2e-0526.49hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris][more]
XP_021839114.18.5e-0533.33uncharacterized protein LOC110778879 [Spinacia oleracea][more]
XP_030923213.11.1e-0432.58uncharacterized protein LOC115950104 [Quercus lobata][more]
KAF7135826.15.5e-0425.48hypothetical protein RHSIM_Rhsim08G0064500 [Rhododendron simsii][more]
XP_030957684.17.2e-0423.81uncharacterized protein LOC115979763 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 19..146
e-value: 1.2E-5
score: 27.3
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 74..140
e-value: 6.0E-11
score: 42.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g002750.1Lcy05g002750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity