Lcy05g002530 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g002530
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 2321052 .. 2322216 (+)
RNA-Seq ExpressionLcy05g002530
SyntenyLcy05g002530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAGTTTAATTTTTGAATAATCAAAACAAATTTTAAGAAAAACACTCAAATATTGTAATTAAAACATTACATACATTAACACTTATACCCAATCTTTCTTTGGTATAGAAAGAAATTCCAACAATAATGTAGTTTCATTTCTGATAAAAACACAGTATATACTATACTATATACTAAAAAAAAAAAGATAAAACACAGTTGGTTTTGGGCTTCAATATTTTTCAGATGAAGATCAATTCAGGGAGCATGTTTGAGAGCACGAGTTCACACAGCTCCCAACTTCCTTTTCAGCTGCATCAATATATATTGCATAAAAATTAAAATTAAAAAAATAATAATAAAACAAAACAAAACAAAGGAAATAATCATATTCAATTCAAACAGGACAGAGCCATAAATCTCTACTAAAAGAGTAAAATTTTATACATAATCTTTCAAAAGGACAAATAAGCTGAGAAAAGCACAAAGGTTAAGTCACTAAATTTTTAGATGTGTGCTCAGAAGTCTTTAAACTCTAAAATTTTATACATAATCTTTCAATTTTTTCTTTTTACCGTCCTAAATTTTCAATTTTATATCATATAAATTCTAAACTTTTAATTTTGTATCTAACGATTTCTAAACTTTATATCTTTCTAATATATTCAACCAACCTCTCTGAAAATTCACGAACTTATTCGATACCAAGGAGAAAATCTGTCACCTAAATCTGTACTTTAACCCGGTTGAAAATATTATTTCTTTTTTTATCTTGTTAATCAAAGACCGAAGATGTTTGATAGGAGCAATTGTCTTCCTCCTTTCTTTTCCGAGAGTTGTTAAGCAACTAAAGAAAGGTGGTGCGTAAATTTGGAACCTGGGTTTTGCTTGGTGCTGAACTTGGTACACGAGGAAGCTGCGCAGCCGAGCTCGCAGAAGAATCGATTCTTTTGTTGCCGATGAGCGTTGGCGTCGTCGCTGTCGATAGGATAAGACGGAATGATGCAGGCTTGCAGGCATCTCAAAGGGCAGTCGGAGAAGGCGACGCCGGGCGTGATGGCGCATATGACGAAGCAGGTGGCGTAGCACTCTTGAAAAGAAGTGGACTTAGCCGGCGTGAGCGAGCTCAGCACCAGCCACGCCATTATAATACCCCATTTCGCCCTGCTGCTCTCCATTGCTGA

mRNA sequence

TAGAAGTTTAATTTTTGAATAATCAAAACAAATTTTAAGAAAAACACTCAAATATTGTAATTAAAACATTACATACATTAACACTTATACCCAATCTTTCTTTGGTATAGAAAGAAATTCCAACAATAATGTAGTTTCATTTCTGATAAAAACACAGTATATACTATACTATATACTAAAAAAAAAAAGATAAAACACAGTTGGTTTTGGGCTTCAATATTTTTCAGATGAAGATCAATTCAGGGAGCATGTTTGAGAGCACGAGTTCACACAGCTCCCAACTTCCTTTTCAGCTGCATCAATATATATTGCATAAAAATTAAAATTAAAAAAATAATAATAAAACAAAACAAAACAAAGGAAATAATCATATTCAATTCAAACAGGACAGAGCCATAAATCTCTACTAAAAGAGTAAAATTTTATACATAATCTTTCAAAAGGACAAATAAGCTGAGAAAAGCACAAAGGTTAAGTCACTAAATTTTTAGATGTGTGCTCAGAAGTCTTTAAACTCTAAAATTTTATACATAATCTTTCAATTTTTTCTTTTTACCGTCCTAAATTTTCAATTTTATATCATATAAATTCTAAACTTTTAATTTTGTATCTAACGATTTCTAAACTTTATATCTTTCTAATATATTCAACCAACCTCTCTGAAAATTCACGAACTTATTCGATACCAAGGAGAAAATCTGTCACCTAAATCTGTACTTTAACCCGGTTGAAAATATTATTTCTTTTTTTATCTTGTTAATCAAAGACCGAAGATGTTTGATAGGAGCAATTGTCTTCCTCCTTTCTTTTCCGAGAGTTGTTAAGCAACTAAAGAAAGGTGGTGCGTAAATTTGGAACCTGGGTTTTGCTTGGTGCTGAACTTGGTACACGAGGAAGCTGCGCAGCCGAGCTCGCAGAAGAATCGATTCTTTTGTTGCCGATGAGCGTTGGCGTCGTCGCTGTCGATAGGATAAGACGGAATGATGCAGGCTTGCAGGCATCTCAAAGGGCAGTCGGAGAAGGCGACGCCGGGCGTGATGGCGCATATGACGAAGCAGGTGGCGTAGCACTCTTGAAAAGAAGTGGACTTAGCCGGCGTGAGCGAGCTCAGCACCAGCCACGCCATTATAATACCCCATTTCGCCCTGCTGCTCTCCATTGCTGA

Coding sequence (CDS)

ATGAGCGTTGGCGTCGTCGCTGTCGATAGGATAAGACGGAATGATGCAGGCTTGCAGGCATCTCAAAGGGCAGTCGGAGAAGGCGACGCCGGGCGTGATGGCGCATATGACGAAGCAGGTGGCGTAGCACTCTTGAAAAGAAGTGGACTTAGCCGGCGTGAGCGAGCTCAGCACCAGCCACGCCATTATAATACCCCATTTCGCCCTGCTGCTCTCCATTGCTGA

Protein sequence

MSVGVVAVDRIRRNDAGLQASQRAVGEGDAGRDGAYDEAGGVALLKRSGLSRRERAQHQPRHYNTPFRPAALHC
Homology
[Close]
BLAST of Lcy05g002530 vs. ExPASy TrEMBL
Match: A0A5A7UVT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002590 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 5  VVAVDRIRRNDAGLQASQRAVGEGDAGRDGAYDEAGGVALLKRSGLSRRERAQHQPRH 63
          +V VDR RR+DA LQASQRAVGEGDAGRDGAYDEAGGVA LKR G+   ER Q QP H
Sbjct: 4  IVIVDRKRRDDASLQASQRAVGEGDAGRDGAYDEAGGVAFLKRGGIGGGERGQQQPSH 61

[Close]
BLAST of Lcy05g002530 vs. ExPASy TrEMBL
Match: A0A0A0K910 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441630 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 8  VDRIRRNDAGLQASQRAVGEGDAGRDGAYDEAGGVALLKRSGLSRRERAQHQPRH 63
          V+R RR+DA LQASQ AVGEG+AG DGAYDEAGGVA LKR G+S  ER Q QP H
Sbjct: 42 VNRKRRDDASLQASQWAVGEGNAGCDGAYDEAGGVAFLKRGGISGGERGQQQPSH 96

[Close]
BLAST of Lcy05g002530 vs. NCBI nr
Match: KAA0058807.1 (hypothetical protein E6C27_scaffold339G002820 [Cucumis melo var. makuwa] >TYK10602.1 hypothetical protein E5676_scaffold459G002590 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 5  VVAVDRIRRNDAGLQASQRAVGEGDAGRDGAYDEAGGVALLKRSGLSRRERAQHQPRH 63
          +V VDR RR+DA LQASQRAVGEGDAGRDGAYDEAGGVA LKR G+   ER Q QP H
Sbjct: 4  IVIVDRKRRDDASLQASQRAVGEGDAGRDGAYDEAGGVAFLKRGGIGGGERGQQQPSH 61

[Close]
BLAST of Lcy05g002530 vs. NCBI nr
Match: KAG6575554.1 (hypothetical protein SDJN03_26193, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 7.0e-09
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0 

Query: 3   VGVVAVDRIRRNDAGLQASQRAVGEGDAGRDGAYDEAGGVALLKRSGLSRR 54
           VG   VDR R ++AGL+ASQ AVGEGDAGRDGAYDEAGGVA LKR G+ RR
Sbjct: 105 VGGGVVDRKRWDNAGLEASQWAVGEGDAGRDGAYDEAGGVAFLKRGGIRRR 155

The following BLAST results are available for this feature:
BLAST of Lcy05g002530 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g002530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UVT91.0e-1375.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K9101.4e-1072.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441630 PE=4 SV=1[more]
BLAST of Lcy05g002530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058807.12.1e-1375.86hypothetical protein E6C27_scaffold339G002820 [Cucumis melo var. makuwa] >TYK106... [more]
KAG6575554.17.0e-0974.51hypothetical protein SDJN03_26193, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy05g002530 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g002530.1Lcy05g002530.1mRNA