Lcy05g002490 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g002490
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontwo-component response regulator-like PRR95 isoform X1
LocationChr05: 2225297 .. 2228718 (-)
RNA-Seq ExpressionLcy05g002490
SyntenyLcy05g002490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGTGCTTCTCTCCCTTTCCTCTCCATCCCTCTCTCGTCTTCTCCCAGATTCGCCGCACCAGCACCACGCCGCCGCCGAAGATCGCTTCCAACTGCTTCCGTGCCTCAGCCACCCTCACACGCCGCGAGAAACGCCAACGCCGCCGTCCTGTCTCAGTGAGTTCTCTCTCTCGTTTCGATCTCTCCTTTAGATCGACTGACAGAGGTAAATGAATAGAAAGTCTTCGCAGATATTTTTTGCATTTTCGCAGTGGTGAGTGAAAGCTTATTGCACACTATGATTCTCAAAGTCGGTTTTGCCGTCAGTTTTTTCAATTTCACTCTCTCTTCTTGTTTCTTTTCTACAGAGACTAAGGTGAGCCAGCAATATCTTTGATATTTGGGTAAATGATGAGGTATAGTTCCTTCTTTTTTTCTTTACTCAGAGTGTGTTTGCCTTCTGCGTTTCTTCATTCGAATTTTATTTCTATGTATTCGTTTGTATTATTGGCAGGGTGTTTGAGAATGGGTAAAGTCAAGTTGAGCGGTGTGGACGACGACGCTATGGAGATGAACTTAGACATGGATGTAGATGATAGAAAAAAGAGGAAGAAAACAAAGAAAGAGGCCGTGGACATAGAGACGAAAGATATTCACCACGTAGAGGAAGATGGATCGCACGGGCTTATCCCAAAAATGGTGCTTAGTGTTTTTCTTGTTGAAGCTGTTGATTCCACTCACCAGATTATCGTCGCGCTCCTTCACAAATGCAGTTACAAAGGTCTTATTCTTTTTTCCTTCTTTCCCAACCCCGTTTATTCGTTCTAATCTGCTGCCTTTGGACGTTACTGTGTGTTAAACTCCTGCTGAGTTATTTTGCCTACAATTCTATCAAAACGATGTTTCTTACATCTAGAGTGCTTCATCTCTTTGTTTGGAGATTACAGTCTTCAACGTTTAATGTTGTTCTATTTGGTGAATGAACTTCCACACGATATTGATGTATTAAAAGGAAAGTGAACATCGTATAAGAGAGTTACTAAGATTGAAGTCTTTAGCCTATGAAGTGAGTTTGTGGTTTAACAATACCCTAGTAGCATTCCATATGCTTCCTTTCTTAAAATGAATACATTACTTAACAACCTTTTTTATTTTATCTAACATAAAACTTATCCTAGTAAATACTTATAAATCTACATAAATGAAACTGAGGAAGCTCTGTTTCTAAACCTGGTGCAATGTTAGTTGCCGATATTGAAGTATTAGATAAATTACTTGTAGGACAGGGTTGGGGTCTTACTTATTTAGATGACCATCTTTACCACAGAAAATTAGGACTACGAGAGTTTAGATTCACAAAAAAGTTAGAGAAGACCCTAAATAGTTATAACAAAGCACTGGGTACTTCTTGATTTTCATCCTTACTCTGCATTTTTTACTGGGCATTTTGCTATTGAGGGTTTTATTTGTGTCTGAACTTATTTTTTCTTGGGTATGAATAGGTGTATATGTGTGCTGCTGATCGAGTGTTGCTTTTGGGGACAATATTGTTATTGGAGCGTAAGAGATTCTTTTTCCTTTATTTTTTTCCCACTAATATTCCTTAGTTAACTCTTTGTTGTATTTGATAATCTTTAGCTAGTTGTCAGGCTTATAATTTGATAAGGTCAGGTTTATGCTTTGTTTTTCTATTTATACTATTTTTCTCTCTCAAAATTCTGGAAAATTTTCTCTACTATTTGGCATCTGCAGTTTTCAATTCTGCTTCTAGTTTGTGGTTTGTTAGGAGTAGTGTTACACATCTAAAATATTAACTATAATCTATTGTAACGAATGGTTTCAATTTGTTGAAGTTTAACGTTTGGTTCTTATATGTGATGTCAATTCTTTGCTAGTTTGATTTTGTGATCATTATTGTGAGTTTGTGGTTTCAATTGTCTGTGATGTAATTTTTGCCTAGTTTTACCAAACCTATTCTTAATACAAATACAAATACAAATTTATTTCATGACTCTCACTAGTAGTTTATCTATCTAAACCCATAATAACAGTAATCCAATTGTATCTTATCTGTGCTATTCAAATTGTGTGGTTAGTTTCAATAGAAAATAGACTAAGAAGAGGGTCATAGAAAAAGAAAAAAAAAAAAAAAAACTCAATTGTTGTTTTCTTGTTGGCATTTGGACCTGACTTCTTCCTTTTTAATTTTTCTCTTATCTCAATGTAGCTCTATGATTTTGTAAACTACTGACAAACTAACTGCAATATGTTCATAACATATTCAATTAGCCATTCTTTATTGCATTAAGAAAGCACATATTAGCTTTCCAGAGCTAGCATCAGTTAATTTATATTTCAATTAGGCATTTTTATACTTGTTCTTGATGATTGGATTACTGGTTACTAGCCTACACCATAAGATACCACAAAATGAGATATATGGAAGTGAAATGGTTGCATTTAATTCAAATTTGGAAGCTCAGAGAATCTGAAAACGGGGGGGGGGGGTGATTAAACTTTTTATTTTATTTTATTATTTGATTATTGCATTACTTTTCATCCATTTTCAACCTTTTGAATTTAGCTCATTATGTTTATCTACATGAACTGGAGTTGCTGTACTCTACAGGTGTTGAACTGGCGTTTGAAGAATAACAACATAACATTCATGTTCTTTTGAGTTCCATGTGTCTGGTTGTATTGTTATATATTATAGACAACATTGCAAAGTGTAAATGCTTGTAGTATTCTTTTGTTCAGGTATAGGAAAAACATCTTCTGCTCGTGTAATTGCAAATCAAGCGGTAAGTTACTATATGCTTATTGTTATTGGTACTCGTGATTGATCTTATATGAAATCTGACCCAAAGAAGGTTGAAAATGGAGAATACTTGTTAAATTTGTTATCTTTGTTGGTGGCTTTGAGCTTGAGATTCTTTATCCTTCTAACTAAGTTAAGTATCATACATGGAAAAAAAATTCTAACGATAATAGTTGTGTTCTTCTACTTCTTTGTTTTTATAATAATTAATTCACTTTTTGACGACTTAACATTTTACTTCCTTCAAAACTTGATTTTCTCTCTTGGGTCTAAATCATGATGGTCATCAATATATTGCCACAAGTTCTTGCGCTTAGTAGGAGATGTTTTCTACAAATTCTTTAGCAAGCTTTTACTTTGACCTTGCATCTTTGCATTTGACAGAAAGCTTACCATTTGAAAGTCATAAATTCTTAGGATAGTTAAGTATTTTCTGCCACCTTTGACTATTGGATAGAGACTTCAAAATAAAGACTCCAACTCATTTTCATTCATGAAAACTCACAATTTTACTTATTGTGTATCTCTCTTTGTTACTCGAAGGCTCAATTAGTGAAGATCAAAATCAACTCTCTTTGGTCGATGTTATCTTGACGTCTTTGAGGAGATTCTAAGCTCTGT

mRNA sequence

TGCGTGCTTCTCTCCCTTTCCTCTCCATCCCTCTCTCGTCTTCTCCCAGATTCGCCGCACCAGCACCACGCCGCCGCCGAAGATCGCTTCCAACTGCTTCCGTGCCTCAGCCACCCTCACACGCCGCGAGAAACGCCAACGCCGCCGTCCTGTCTCAGTGAGTTCTCTCTCTCGTTTCGATCTCTCCTTTAGATCGACTGACAGAGGTAAATGAATAGAAAGTCTTCGCAGATATTTTTTGCATTTTCGCAGTGGTGAGTGAAAGCTTATTGCACACTATGATTCTCAAAGTCGGTTTTGCCGTCAGTTTTTTCAATTTCACTCTCTCTTCTTGTTTCTTTTCTACAGAGACTAAGGTGAGCCAGCAATATCTTTGATATTTGGGTAAATGATGAGGGTGTTTGAGAATGGGTAAAGTCAAGTTGAGCGGTGTGGACGACGACGCTATGGAGATGAACTTAGACATGGATGTAGATGATAGAAAAAAGAGGAAGAAAACAAAGAAAGAGGCCGTGGACATAGAGACGAAAGATATTCACCACGTAGAGGAAGATGGATCGCACGGGCTTATCCCAAAAATGGTGCTTAGTGTTTTTCTTGTTGAAGCTGTTGATTCCACTCACCAGATTATCGTCGCGCTCCTTCACAAATGCAGTTACAAAGGTGTATATGTGTGCTGCTGATCGAGTGTTGCTTTTGGGGACAATATTGTTATTGGAGCGTATAGGAAAAACATCTTCTGCTCGTGTAATTGCAAATCAAGCGGCTCAATTAGTGAAGATCAAAATCAACTCTCTTTGGTCGATGTTATCTTGACGTCTTTGAGGAGATTCTAAGCTCTGT

Coding sequence (CDS)

ATGGGTAAAGTCAAGTTGAGCGGTGTGGACGACGACGCTATGGAGATGAACTTAGACATGGATGTAGATGATAGAAAAAAGAGGAAGAAAACAAAGAAAGAGGCCGTGGACATAGAGACGAAAGATATTCACCACGTAGAGGAAGATGGATCGCACGGGCTTATCCCAAAAATGGTGCTTAGTGTTTTTCTTGTTGAAGCTGTTGATTCCACTCACCAGATTATCGTCGCGCTCCTTCACAAATGCAGTTACAAAGGTGTATATGTGTGCTGCTGA

Protein sequence

MGKVKLSGVDDDAMEMNLDMDVDDRKKRKKTKKEAVDIETKDIHHVEEDGSHGLIPKMVLSVFLVEAVDSTHQIIVALLHKCSYKGVYVCC
Homology
[Close]
BLAST of Lcy05g002490 vs. ExPASy TrEMBL
Match: A0A6J1IP50 (two-component response regulator-like PRR95 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479278 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VDIE K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDIEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. ExPASy TrEMBL
Match: A0A6J1ITR1 (two-component response regulator-like APRR3 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111479278 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VDIE K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDIEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. ExPASy TrEMBL
Match: A0A6J1IX22 (two-component response regulator-like PRR95 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479278 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VDIE K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDIEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. ExPASy TrEMBL
Match: A0A6J1EFZ5 (two-component response regulator-like APRR3 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111432167 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VD+E K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDMEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. ExPASy TrEMBL
Match: A0A6J1EA49 (two-component response regulator-like PRR95 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432167 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VD+E K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDMEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. NCBI nr
Match: XP_022979597.1 (two-component response regulator-like PRR95 isoform X1 [Cucurbita maxima] >XP_022979598.1 two-component response regulator-like PRR95 isoform X1 [Cucurbita maxima])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VDIE K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDIEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. NCBI nr
Match: XP_022979600.1 (two-component response regulator-like APRR3 isoform X3 [Cucurbita maxima])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VDIE K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDIEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. NCBI nr
Match: XP_022979599.1 (two-component response regulator-like PRR95 isoform X2 [Cucurbita maxima])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VDIE K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDIEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. NCBI nr
Match: XP_022924766.1 (two-component response regulator-like PRR95 isoform X4 [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-19
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VD+E K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDMEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. NCBI nr
Match: XP_022924763.1 (two-component response regulator-like PRR95 isoform X1 [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-19
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MGKVKLSGVDDDAMEMNLDMDV------DDRKKRKKTKKEAVDIETKDIHHVEEDGSHGL 60
          M KV+LSGV DDAM+M+LD+D+      DDR KRKK K + VD+E K IHH +EDGSH L
Sbjct: 1  MDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDMEMKHIHHADEDGSHKL 60

Query: 61 IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           PK  LSV LVEA DST +II ALL KCSY+
Sbjct: 61 FPKQALSVLLVEADDSTRRIIAALLRKCSYR 91

[Close]
BLAST of Lcy05g002490 vs. TAIR 10
Match: AT5G24470.1 (pseudo-response regulator 5 )

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 55  IPKMVLSVFLVEAVDSTHQIIVALLHKCSYK 86
           +PK+ L V LVEA DST QII ALL KCSY+
Sbjct: 154 LPKIALRVLLVEADDSTRQIIAALLRKCSYR 184

The following BLAST results are available for this feature:
BLAST of Lcy05g002490 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g002490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IP506.9e-2063.74two-component response regulator-like PRR95 isoform X1 OS=Cucurbita maxima OX=36... [more]
A0A6J1ITR16.9e-2063.74two-component response regulator-like APRR3 isoform X3 OS=Cucurbita maxima OX=36... [more]
A0A6J1IX226.9e-2063.74two-component response regulator-like PRR95 isoform X2 OS=Cucurbita maxima OX=36... [more]
A0A6J1EFZ51.5e-1962.64two-component response regulator-like APRR3 isoform X3 OS=Cucurbita moschata OX=... [more]
A0A6J1EA491.5e-1962.64two-component response regulator-like PRR95 isoform X2 OS=Cucurbita moschata OX=... [more]
BLAST of Lcy05g002490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022979597.11.4e-1963.74two-component response regulator-like PRR95 isoform X1 [Cucurbita maxima] >XP_02... [more]
XP_022979600.11.4e-1963.74two-component response regulator-like APRR3 isoform X3 [Cucurbita maxima][more]
XP_022979599.11.4e-1963.74two-component response regulator-like PRR95 isoform X2 [Cucurbita maxima][more]
XP_022924766.13.2e-1962.64two-component response regulator-like PRR95 isoform X4 [Cucurbita moschata][more]
XP_022924763.13.2e-1962.64two-component response regulator-like PRR95 isoform X1 [Cucurbita moschata][more]
BLAST of Lcy05g002490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G24470.11.0e-0467.74pseudo-response regulator 5 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g002490.1Lcy05g002490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process