Lcy05g002130 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g002130
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Cytochrome c-type biogenesis protein
Location	Chr05: 1967563 .. 1969272 (-)
RNA-Seq Expression	Lcy05g002130
Synteny	Lcy05g002130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATTTTTTCACCTGATAAACGAGTAGGTCAATCTTGGTTTTTCTAAATTTTTTGTTTCTTTCTGTGTATTTATAAACAAAAACTGTTAATAAATTTTTCGTGATGGATTTTTAGATATAAGGAGGCTGCAGTCCATTTTTAATTCTGAGTTTTTTTAAAAAATAATTTTGTAAGTTCCTGCTGTTGAAGCTAAACTTTTGAACCACCTTCTTAGGTAAATTGGGTACAAAATTATTTTGCTTTTCACCTTTTCAGTTCCTTAGATCCATTGAGAATTCATATAAGAGGATGAATAGTTGGTGGTACTATGGTAGATTCGTAATGATATGTTCTCCCTCTTTGTAGTTTCATAAGATTGTTACTGAAACTTGATGTTTCTATTTTTTTTTTCCTGACGTGCTCGATGTTTATGAGATTTTCAGCTGAAGAAAGTTTGAACTCTTAAACTTGGTTTGTCTTTGTCTTTAACTTGTAGTTCGCATTCGAATGATTTCTTGGTATTTTCTTGCAATACAGTCTAAAATGGAGAGTGATGACGATGCTGTAAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAACATTAGTCACAATGTCAGGTGCATTGAATGCGGTAGTCAATCTATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGGTACCAGTTATTTAGTTAAACTCCAAGCTGTATAAGTTAACTAAGAGCGGGAAAATCAGAGAAACTCTCGAAAAGCATTATACGGAAGTTCAAGAATCCTTCTTTCTCGTGCAAAGTTGCCCCTCTTTTCCTTTTGAAGAAAGATGAAAAACAGTTTGGACTAGCAGAAAGTGATGAAAAGCTCTTGAAGAGGTGCAATTACAAAAGCTCCTTACAAGAGTGCAGCATATCGAGATTATAATGATAATGCACTCCAACAAGTAAAGAGGAGAGGAGGCAGTCACTGAAGTTCTTATAATTCTTTTCAAACCATCACAATTCAAAAGTTTCTAACTCTTCCATGGGGACAATAAATCTTCCTTTGGATTAGTATCTATGCTGGAAGTCCCTTGGAAATTTTAAATGATGCACATTTTTCAATAAACTCCATTGGATGACAATGCCTCTTATGGCATAATTATGGTCTAAGAAGACCGATTAACCTGATCATGAATCTTTGCTACATAATGATTACTCACTGATATATTAAGTTTCCTATCTTGTGCCTATAATTTTGCATCAATATATTTCTGCAATAAATTTGCTTGATATTGGGTTGTATTTGAAATATCACCATAGTTGATCCGTGATGAGATTCGATCTGGGAAGACGGACAAGGAGATCTATAAAAAGCTTGAGAATGATTACGGGGAGACAATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCGTTATGGCTATCACCGGTCAGTTAATATTAGTAAGAAATTCAAAATTAAGTAACTATTTCTGCCTATTTCTTCTAATTTTAGTTTTAAATATGCTACTTTGGAATAGTTGTTAGTGGCTGGCGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCATATCATGGCTTTAAATTTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTGCTCTCACCTCCACCTTCTCAGAGAAGTATGTCTTTCTGGTGGAGGAGTTGGCGAAGGCAGTGA

mRNA sequence

TTGATTTTTTCACCTGATAAACGAGTAGGTCAATCTTGGTTTTTCTAAATTTTTTGTTTCTTTCTGTGTATTTATAAACAAAAACTGTTAATAAATTTTTCGTGATGGATTTTTAGATATAAGGAGGCTGCAGTCCATTTTTAATTCTGAGTTTTTTTAAAAAATAATTTTGTAAGTTCCTGCTGTTGAAGCTAAACTTTTGAACCACCTTCTTAGGTAAATTGGGTACAAAATTATTTTGCTTTTCACCTTTTCAGTTCCTTAGATCCATTGAGAATTCATATAAGAGGATGAATAGTTGGTGGTACTATGGTAGATTCGTAATGATATGTTCTCCCTCTTTGTAGTTTCATAAGATTGTTACTGAAACTTGATGTTTCTATTTTTTTTTTCCTGACGTGCTCGATGTTTATGAGATTTTCAGCTGAAGAAAGTTTGAACTCTTAAACTTGGTTTGTCTTTGTCTTTAACTTGTAGTTCGCATTCGAATGATTTCTTGGTATTTTCTTGCAATACAGTCTAAAATGGAGAGTGATGACGATGCTGTAAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAACATTAGTCACAATGTCAGGTGCATTGAATGCGGTAGTCAATCTATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATCCGTGATGAGATTCGATCTGGGAAGACGGACAAGGAGATCTATAAAAAGCTTGAGAATGATTACGGGGAGACAATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCGTTATGGCTATCACCGTTGTTAGTGGCTGGCGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCATATCATGGCTTTAAATTTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTGCTCTCACCTCCACCTTCTCAGAGAAGTATGTCTTTCTGGTGGAGGAGTTGGCGAAGGCAGTGA

Coding sequence (CDS)

ATGATTTCTTGGTATTTTCTTGCAATACAGTCTAAAATGGAGAGTGATGACGATGCTGTAAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAACATTAGTCACAATGTCAGGTGCATTGAATGCGGTAGTCAATCTATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATCCGTGATGAGATTCGATCTGGGAAGACGGACAAGGAGATCTATAAAAAGCTTGAGAATGATTACGGGGAGACAATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCGTTATGGCTATCACCGTTGTTAGTGGCTGGCGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCATATCATGGCTTTAAATTTGGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTGCTCTCACCTCCACCTTCTCAGAGAAGTATGTCTTTCTGGTGGAGGAGTTGGCGAAGGCAGTGA

Protein sequence

MISWYFLAIQSKMESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ

Homology

[Close]

BLAST of Lcy05g002130 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-63
Identity = 117/152 (76.97%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           M +++D VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGK+D
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIYKKL+ DYGETILYTPKFDLQTAA+WLSP++V G AAGVWAY KH+Q++NVHIMALN
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYKKHRQRTNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWW 165
           LVRGVPLTP+EK+TMLD+L+PPP   +  +WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPPP--ANKWWW 149

[Close]

BLAST of Lcy05g002130 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-63
Identity = 117/152 (76.97%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           M +++D VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGK+D
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIYKKL+ DYGETILYTPKFDLQTAA+WLSP++V G AAGVWAY KH+Q++NVHIMALN
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWW 165
           LVRGVPLTP+EK+TMLD+L+PPP   +  +WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPPP--ANKWWW 149

[Close]

BLAST of Lcy05g002130 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.5e-53
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME  D+  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIY KLE+++GET+LY PKFDLQTAALWL+P+++AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPP-PSQRSMSFWWRSW 168
           L+RGVPLTPKE+ T+LD+L PP P  + +    R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Lcy05g002130 vs. ExPASy Swiss-Prot
Match: P45405 (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ccmH PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-16
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 18  DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYK 77
           D +      E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G ++ ++  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 78  KLENDYGETILYTPKFDLQTAALW-LSPLLVAGAAAGVWAYSKHKQKSNVHIMALNLVRG 137
            L   YGE +L  P+F+ QT  LW L PLL+ G    +W   + + +S   + A      
Sbjct: 85  FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------ 144

Query: 138 VPLTPKEKQTMLDLLS 153
            PLTP E+  +  L+S
Sbjct: 145 PPLTPDEEARLAALMS 154

[Close]

BLAST of Lcy05g002130 vs. ExPASy Swiss-Prot
Match: P45406 (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ccmH PE=3 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 0


Query: 18  DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYK 77
           D V     +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G +D+ +  
Sbjct: 24  DEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVIS 83

Query: 78  KLENDYGETILYTPKFDLQTAALWLSP--LLVAGAAAGVWAYSKHKQKSNVHIMALNLVR 137
            + + YGE +L  P+ + +T  LW  P  LLVAG    V A  +   +          V 
Sbjct: 84  YVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VP 143

Query: 138 GVPLTPKEKQTMLDLLSP 154
           G PL+ +EK+ +  LL P
Sbjct: 144 GAPLSDEEKERLDRLLRP 151

[Close]

BLAST of Lcy05g002130 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.6e-78
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME D+DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIYKKLENDYGETILYTPKFDLQTA LWLSP+LVAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ S WWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Lcy05g002130 vs. ExPASy TrEMBL
Match: A0A5A7TY95 (Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00810 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.6e-78
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME D+DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIYKKLENDYGETILYTPKFDLQTA LWLSP+LVAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ S WWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Lcy05g002130 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 145/158 (91.77%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           MES+DDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIY+KLE+DYGET+LYTPKFDLQTAALWLSP+LVAGAAAGVWAY+KHKQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           LVRGVPLTPKEKQTMLDLL+PPP QR+ S WWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Lcy05g002130 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.1e-77
Identity = 144/158 (91.14%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME+D+DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           K+IYKKLENDYGETILYTPKFDLQTA LWLSP++VAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ S WWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Lcy05g002130 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.3e-76
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           MESD DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEI+KKLENDYGETILYTPKFDLQTAALWLSP+LVAGAAAGVWAYSK+KQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           +VRGVPLTP+EKQTMLDLLSPPP QR+ S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Lcy05g002130 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 9.6e-78
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME D+DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIYKKLENDYGETILYTPKFDLQTA LWLSP+LVAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ S WWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Lcy05g002130 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 297.7 bits (761), Expect = 6.2e-77
Identity = 145/158 (91.77%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           MES+DDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIY+KLE+DYGET+LYTPKFDLQTAALWLSP+LVAGAAAGVWAY+KHKQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           LVRGVPLTPKEKQTMLDLL+PPP QR+ S WWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Lcy05g002130 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 144/158 (91.14%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME+D+DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           K+IYKKLENDYGETILYTPKFDLQTA LWLSP++VAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ S WWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Lcy05g002130 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 4.0e-76
Identity = 145/153 (94.77%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME+D+DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIYKKLENDYGET+LYTPKFDLQTAALWLSP+LVAGAAAGVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQRSNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWR 166
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ S WWR
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTSSSWWR 153

[Close]

BLAST of Lcy05g002130 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 6.8e-76
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           MESD DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEI+KKLENDYGETILYTPKFDLQTAALWLSP+LVAGAAAGVWAYSK+KQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPPPSQRSMSFWWRSWRRQ 171
           +VRGVPLTP+EKQTMLDLLSPPP QR+ S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Lcy05g002130 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 208.0 bits (528), Expect = 6.0e-54
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME  D+  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIY KLE+++GET+LY PKFDLQTAALWL+P+++AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPP-PSQRSMSFWWRSW 168
           L+RGVPLTPKE+ T+LD+L PP P  + +    R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Lcy05g002130 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 208.0 bits (528), Expect = 6.0e-54
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 13  MESDDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 72
           ME  D+  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 73  KEIYKKLENDYGETILYTPKFDLQTAALWLSPLLVAGAAAGVWAYSKHKQKSNVHIMALN 132
           KEIY KLE+++GET+LY PKFDLQTAALWL+P+++AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 133 LVRGVPLTPKEKQTMLDLLSPP-PSQRSMSFWWRSW 168
           L+RGVPLTPKE+ T+LD+L PP P  + +    R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

The following BLAST results are available for this feature:

BLAST of Lcy05g002130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	1.1e-63	76.97	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	1.1e-63	76.97	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	8.5e-53	66.03	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
P45405	1.7e-16	35.29	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
P45406	2.0e-14	36.23	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX...	[more]

BLAST of Lcy05g002130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZT6	4.6e-78	93.67	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]
A0A5A7TY95	4.6e-78	93.67	Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DHL6	3.0e-77	91.77	Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L351	5.1e-77	91.14	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A6J1JTI4	3.3e-76	91.77	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]

BLAST of Lcy05g002130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452301.1	9.6e-78	93.67	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]
XP_022152937.1	6.2e-77	91.77	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]
XP_004149299.1	1.1e-76	91.14	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_038904619.1	4.0e-76	94.77	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_022953979.1	6.8e-76	91.77	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]

BLAST of Lcy05g002130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	6.0e-54	66.03	cytochrome c biogenesis protein family	[more]
AT1G15220.2	6.0e-54	66.03	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 11..94 e-value: 9.0E-21 score: 75.6
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 7..149 e-value: 9.1E-31 score: 106.0
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 13..168
None	No IPR available	CDD	cd16378	CcmH_N	coord: 26..91 e-value: 1.59433E-26 score: 93.7474

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g002130.1	Lcy05g002130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity