Lcy05g002050 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g002050
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein THYLAKOID ASSEMBLY 8, chloroplastic
Location	Chr05: 1917868 .. 1918763 (+)
RNA-Seq Expression	Lcy05g002050
Synteny	Lcy05g002050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAACCCAATCCATTTCCCCAATCCTCACTCCGCCATGGCTTTTTCTCTTCACTCTACATTTCTCAAATCCCAATTCGCAATTCCGATTCCCATCTCCGCCGCAACCGCCGCCGCCGCCGCCGTCTCTTTTCCGGTACGCTGCGGCCCACGCGACAACCGAGGGCCGCTAGTTAAAGGCAGAACCCTAAGCACCGAGGCCATTCAAGCCATTCAATCCCTAAAACGGGCGGAAAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCTAATACTCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTTCTCCGGCAGGACCGGTGTCCCCTCGCCTTGGAGGTTTTCACCGTCGTCCGATCGGAGTACGGCGCCGATTTAGGGATGTACGCGGAGGTCGCGGCGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTGTGCGATTTGGACGACGGAGAGAGTAAAATCCAGTGCGATGACAAGGGTTTGATTAAGTTGATCAAGGCGGTGGTTGGTGGAGATCGAAGGGAATCGACGGTCAGGATTTATCGGATGATGAGGAGGAGCGGTTGGGGGTCCGCCAGTAAAGCTGATGAGTATATGGTTAGGGTTTTGAGCAAGGGTTTAAGGAGACTTGGGGAAGTGGAATTGGCTGATGAGATCAATAGGGAATTTCAAGATTTAGTGGGGACTTTGTGAAAATTTTTGTTTCTATATTTTTGTTGTATAAGTATAATAATATTATGTTTCTATTTACTTTGGATTTTTTTTTAGGATTATCGGCATGATAATTAAGAAATGTTGATATGAAATATTTATTGAATGATTTTGATATATTCTATTAAAAAAATTATAATATTAAATTTTG

mRNA sequence

CAAAAACCCAATCCATTTCCCCAATCCTCACTCCGCCATGGCTTTTTCTCTTCACTCTACATTTCTCAAATCCCAATTCGCAATTCCGATTCCCATCTCCGCCGCAACCGCCGCCGCCGCCGCCGTCTCTTTTCCGGTACGCTGCGGCCCACGCGACAACCGAGGGCCGCTAGTTAAAGGCAGAACCCTAAGCACCGAGGCCATTCAAGCCATTCAATCCCTAAAACGGGCGGAAAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCTAATACTCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTTCTCCGGCAGGACCGGTGTCCCCTCGCCTTGGAGGTTTTCACCGTCGTCCGATCGGAGTACGGCGCCGATTTAGGGATGTACGCGGAGGTCGCGGCGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTGTGCGATTTGGACGACGGAGAGAGTAAAATCCAGTGCGATGACAAGGGTTTGATTAAGTTGATCAAGGCGGTGGTTGGTGGAGATCGAAGGGAATCGACGGTCAGGATTTATCGGATGATGAGGAGGAGCGGTTGGGGGTCCGCCAGTAAAGCTGATGAGTATATGGTTAGGGTTTTGAGCAAGGGTTTAAGGAGACTTGGGGAAGTGGAATTGGCTGATGAGATCAATAGGGAATTTCAAGATTTAGTGGGGACTTTGTGAAAATTTTTGTTTCTATATTTTTGTTGTATAAGTATAATAATATTATGTTTCTATTTACTTTGGATTTTTTTTTAGGATTATCGGCATGATAATTAAGAAATGTTGATATGAAATATTTATTGAATGATTTTGATATATTCTATTAAAAAAATTATAATATTAAATTTTG

Coding sequence (CDS)

ATGGCTTTTTCTCTTCACTCTACATTTCTCAAATCCCAATTCGCAATTCCGATTCCCATCTCCGCCGCAACCGCCGCCGCCGCCGCCGTCTCTTTTCCGGTACGCTGCGGCCCACGCGACAACCGAGGGCCGCTAGTTAAAGGCAGAACCCTAAGCACCGAGGCCATTCAAGCCATTCAATCCCTAAAACGGGCGGAAAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCTAATACTCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCCTGAAGGAGCTTCTCCGGCAGGACCGGTGTCCCCTCGCCTTGGAGGTTTTCACCGTCGTCCGATCGGAGTACGGCGCCGATTTAGGGATGTACGCGGAGGTCGCGGCGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGGCTGGTGTGCGATTTGGACGACGGAGAGAGTAAAATCCAGTGCGATGACAAGGGTTTGATTAAGTTGATCAAGGCGGTGGTTGGTGGAGATCGAAGGGAATCGACGGTCAGGATTTATCGGATGATGAGGAGGAGCGGTTGGGGGTCCGCCAGTAAAGCTGATGAGTATATGGTTAGGGTTTTGAGCAAGGGTTTAAGGAGACTTGGGGAAGTGGAATTGGCTGATGAGATCAATAGGGAATTTCAAGATTTAGTGGGGACTTTGTGA

Protein sequence

MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADLGMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIYRMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGTL

Homology

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BLAST of Lcy05g002050 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-47
Identity = 105/188 (55.85%), Postives = 140/188 (74.47%), Query Frame = 0


Query: 34  VRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKLQQVLSNTLSRLLKADLVAAL 93
           +RCGPRDNRGPL+KGR LSTEAIQ+IQSLKRA R+  +    +    L RL+K+DL++ L
Sbjct: 31  IRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVS--LSLTLRPLRRLIKSDLISVL 90

Query: 94  KELLRQDRCPLALEVFTVVRSEY-GADLGMYAEVAAALSRNGAAEEIDRLVCDLDDGESK 153
           +ELLRQD C LA+ V + +R+EY   DL +YA++  AL+RN   +EIDRL+ ++D  + +
Sbjct: 91  RELLRQDYCTLAVHVLSTLRTEYPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQR 150

Query: 154 IQCDDKGLIKLIKAVVGGDRRESTVRIYRMMRRSGWGSAS-KADEYMVRVLSKGLRRLGE 213
              DDK L KLI+AVVG +RRES VR+Y +MR SGWGS S +ADEY+  VLSKGL RLGE
Sbjct: 151 --SDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 210

Query: 214 VELADEIN 220
            +LA +++
Sbjct: 211 PDLASQVS 214

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BLAST of Lcy05g002050 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.6e-08
Identity = 52/187 (27.81%), Postives = 96/187 (51.34%), Query Frame = 0


Query: 42  RGPLVKGRTL-STEAIQAIQSLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQD 101
           RGPL +G+ L   EA+  I  LKR  + D  KL + +   + RLLK D++A + EL RQ+
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 102 RCPLALEVFTVVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDK 161
              LA+++F V++ +  Y  D+ MY ++  +L+++   +E   L   +   +  +  D +
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMK--KENLFPDSQ 182

Query: 162 GLIKLIKAVVGGDRRESTVRIYRMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEI 221
              ++I+  +        + +Y  M +    S    +E   RVL KGL  L    L +++
Sbjct: 183 TYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPLLRNKV 240

Query: 222 NREFQDL 226
            ++F++L
Sbjct: 243 KKDFEEL 240

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BLAST of Lcy05g002050 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07
Identity = 49/177 (27.68%), Postives = 91/177 (51.41%), Query Frame = 0


Query: 51  LSTEAIQAIQSLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFT 110
           +S E + A + LKR + +   +L + + + +SRLLK+DLV+ L E  RQ++  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 111 VVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVV 170
           VVR E  Y  D+  Y ++   L+RN   +E  ++  DL   + ++  D      L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLK--KEEVLFDQHTFGDLVRGFL 120

Query: 171 GGDRRESTVRIYRMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDL 226
             +     +R+Y  MR     S  +      RV+ KGL  +   EL +++  +F +L
Sbjct: 121 DNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

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BLAST of Lcy05g002050 vs. ExPASy TrEMBL
Match: A0A6J1GQS0 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456620 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.7e-99
Identity = 196/228 (85.96%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MAFSLHSTFLKSQ  IPIPISA  AA   VS PVRCGPRDNRGPLVKGRTLSTEAIQAIQ
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA--AATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAE+SDPTKL+QVLS TLSRLLKADLVA LKELLRQDRC LALEVF VVRSEYGADL
Sbjct: 61  SLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIY 180
           GMYAEVAAALSRNGA EEIDRLVCDL+D +  IQCDDKGLIKLIKAV+GGDRRESTVRIY
Sbjct: 121 GMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 181 RMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGT 229
           RMM+RSGWGS  KAD+Y VRVLSKGLRRLGE+E+ADE+N +FQDLVG+
Sbjct: 181 RMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGS 226

[Close]

BLAST of Lcy05g002050 vs. ExPASy TrEMBL
Match: A0A6J1JTE8 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488709 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.2e-99
Identity = 196/228 (85.96%), Postives = 207/228 (90.79%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MAFSLHSTFLKSQ  IPIPISA   A   VS PVRCGPRDNRGPLVKGRTLSTEAIQAIQ
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA--TATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAE+SDPTKL+QVLS TLSRLLKADLVA LKELLRQDRC LALEVF VVRSEYG DL
Sbjct: 61  SLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIY 180
           GMYAEVAAALSRNGA EEIDRLVCDL+D +  IQCDDKGLIKLIKAV+GGDRRESTVRIY
Sbjct: 121 GMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 181 RMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGT 229
           RMM+RSGWGS  KAD+YMVRVLSKGLRRLGE+E+ADEIN +FQDLVG+
Sbjct: 181 RMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGS 226

[Close]

BLAST of Lcy05g002050 vs. ExPASy TrEMBL
Match: A0A1S3CGD3 (uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 8.1e-94
Identity = 191/231 (82.68%), Postives = 207/231 (89.61%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MA SLHSTFLKSQ +IPIP S AT AA AVSF VRCGPRDNRGPLVKGRTLS EAIQAIQ
Sbjct: 28  MASSLHSTFLKSQISIPIPTSTAT-AAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQ 87

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAERSDPTKLQQVLS TLSRLLKADLVA LKELLRQ+RC LALEVF V+RSEY A+L
Sbjct: 88  SLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAEL 147

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLD--DGESKIQCDDKGLIKLIKAVVGGDRRESTVR 180
           G+YAEVAAALSRNGAAEEIDRLVCDLD  DG  +   DDKGLIKLIKAV+ G+RRESTVR
Sbjct: 148 GLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVR 207

Query: 181 IYRMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGTL 230
           IYRMMRR+GWGS  K D+YM++V+SKGLRR+GE+ELADEINREFQDLVG+L
Sbjct: 208 IYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIELADEINREFQDLVGSL 257

[Close]

BLAST of Lcy05g002050 vs. ExPASy TrEMBL
Match: A0A5A7V0E2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002110 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.2e-92
Identity = 190/231 (82.25%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MA SL STFLKSQ +IPIP S AT AA AVSF VRCGPRDNRGPLVKGRTLS EAIQAIQ
Sbjct: 1   MASSLRSTFLKSQISIPIPTSTAT-AAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAERSDPTKLQQVLS TLSRLLKADLVA LKELLRQ+RC LALEVF V+RSEY A+L
Sbjct: 61  SLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAEL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLD--DGESKIQCDDKGLIKLIKAVVGGDRRESTVR 180
           G+YAEVAAALSRNGAAEEIDRLVCDLD  DG  +   DDKGLIKLIKAV+ G+RRESTVR
Sbjct: 121 GLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVR 180

Query: 181 IYRMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGTL 230
           IYRMMRR+GWGS  K D+YM++V+SKGLRR+GE+ELADEINREFQDLVG+L
Sbjct: 181 IYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL 230

[Close]

BLAST of Lcy05g002050 vs. ExPASy TrEMBL
Match: A0A0A0K6N6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.0e-92
Identity = 188/230 (81.74%), Postives = 205/230 (89.13%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MA SLHSTFLKSQ +IPIP S AT +  AVSF VRCGPRDNRGPLVKGRTLS EAIQAIQ
Sbjct: 1   MASSLHSTFLKSQISIPIPASTAT-SPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAERSDPTKLQQVLS TLSRLLKADLVA LKELLRQ+RC LALEVF V++SEY A+L
Sbjct: 61  SLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAEL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQC--DDKGLIKLIKAVVGGDRRESTVR 180
           G+YAEVAAALSRNGAAEEIDRLV DLD G+  I+   DDKGLIKLIKAV+ G+RRESTVR
Sbjct: 121 GLYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVR 180

Query: 181 IYRMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGT 229
           IYRMMRR GWGS  KAD+YM++VLSKGLRRLGE+ELADEINREF+DLVG+
Sbjct: 181 IYRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGS 229

[Close]

BLAST of Lcy05g002050 vs. NCBI nr
Match: XP_038898717.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 372.9 bits (956), Expect = 2.0e-99
Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MA S+HSTFLKSQ +IPIP+SA  AAA AVS PVRCGPRDNRGPLVKGRTLS EAIQAIQ
Sbjct: 1   MASSIHSTFLKSQISIPIPVSA--AAAVAVSLPVRCGPRDNRGPLVKGRTLSIEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAERSDPTKLQQVLS TLSRLLKADLVA+LKELLRQDRC LALEVF V+RSEYGADL
Sbjct: 61  SLKRAERSDPTKLQQVLSTTLSRLLKADLVASLKELLRQDRCALALEVFAVIRSEYGADL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIY 180
           GMYAEVAAALSRNGAAEEIDRLVCDLD G+  IQ DDKGLIKLIKAV+ GDRRESTVRIY
Sbjct: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDGGDVLIQWDDKGLIKLIKAVISGDRRESTVRIY 180

Query: 181 RMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGTL 230
           RMMRR+GWGS  KAD+Y+VRVLSKGLRR GE+ELADEINREFQDLVG +
Sbjct: 181 RMMRRNGWGSTIKADDYLVRVLSKGLRRFGEMELADEINREFQDLVGNV 227

[Close]

BLAST of Lcy05g002050 vs. NCBI nr
Match: XP_023522652.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548438.1 protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548440.1 protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.9 bits (956), Expect = 2.0e-99
Identity = 196/228 (85.96%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MAFSLHSTFLKSQ  IPIPISA   A   VS PVRCGPRDNRGPLVKGRTLSTEAIQAIQ
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA--TATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAE+SDPTKL+QVLS TLSRLLKADLVA LKELLRQDRC LALEVF VVRSEYGADL
Sbjct: 61  SLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIY 180
           GMYAEVAAALSRNGAAEEIDRLVCDL+D +  IQCDDKGLIKLIKAV+GGDRRESTVRIY
Sbjct: 121 GMYAEVAAALSRNGAAEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 181 RMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGT 229
           RMM+RSGWGS  KAD+Y VRVLSKGLRRLGE+E+ADE+N +FQDLVG+
Sbjct: 181 RMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGS 226

[Close]

BLAST of Lcy05g002050 vs. NCBI nr
Match: XP_022954347.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita moschata])

HSP 1 Score: 372.1 bits (954), Expect = 3.5e-99
Identity = 196/228 (85.96%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MAFSLHSTFLKSQ  IPIPISA  AA   VS PVRCGPRDNRGPLVKGRTLSTEAIQAIQ
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA--AATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAE+SDPTKL+QVLS TLSRLLKADLVA LKELLRQDRC LALEVF VVRSEYGADL
Sbjct: 61  SLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIY 180
           GMYAEVAAALSRNGA EEIDRLVCDL+D +  IQCDDKGLIKLIKAV+GGDRRESTVRIY
Sbjct: 121 GMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 181 RMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGT 229
           RMM+RSGWGS  KAD+Y VRVLSKGLRRLGE+E+ADE+N +FQDLVG+
Sbjct: 181 RMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGS 226

[Close]

BLAST of Lcy05g002050 vs. NCBI nr
Match: XP_022992386.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita maxima])

HSP 1 Score: 371.7 bits (953), Expect = 4.5e-99
Identity = 196/228 (85.96%), Postives = 207/228 (90.79%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MAFSLHSTFLKSQ  IPIPISA   A   VS PVRCGPRDNRGPLVKGRTLSTEAIQAIQ
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA--TATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAE+SDPTKL+QVLS TLSRLLKADLVA LKELLRQDRC LALEVF VVRSEYG DL
Sbjct: 61  SLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIY 180
           GMYAEVAAALSRNGA EEIDRLVCDL+D +  IQCDDKGLIKLIKAV+GGDRRESTVRIY
Sbjct: 121 GMYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQCDDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 181 RMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGT 229
           RMM+RSGWGS  KAD+YMVRVLSKGLRRLGE+E+ADEIN +FQDLVG+
Sbjct: 181 RMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGS 226

[Close]

BLAST of Lcy05g002050 vs. NCBI nr
Match: KAG7014066.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370.9 bits (951), Expect = 7.8e-99
Identity = 195/228 (85.53%), Postives = 207/228 (90.79%), Query Frame = 0


Query: 1   MAFSLHSTFLKSQFAIPIPISAATAAAAAVSFPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60
           MAFSLHSTFLKSQ  IPIPISA   A   VS PVRCGPRDNRGPLVKGRTLSTEAIQAIQ
Sbjct: 1   MAFSLHSTFLKSQIPIPIPISA--TATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQ 60

Query: 61  SLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFTVVRSEYGADL 120
           SLKRAE+SDPTKL+QVLS TLSRLLKADLVA LKELLRQDRC LALEVF VVRSEYGADL
Sbjct: 61  SLKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADL 120

Query: 121 GMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIY 180
           GMYAEVAAALSRNGA EEIDRLVCDL+D +  IQCDDKGLIKLIKAV+GGDRRESTVRIY
Sbjct: 121 GMYAEVAAALSRNGAMEEIDRLVCDLEDEDRAIQCDDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 181 RMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDLVGT 229
           RMM+RSGWGS  KAD+Y VRVLSKGLRRLGE+E+ADE+N +FQDLVG+
Sbjct: 181 RMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGS 226

[Close]

BLAST of Lcy05g002050 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 191.0 bits (484), Expect = 1.0e-48
Identity = 105/188 (55.85%), Postives = 140/188 (74.47%), Query Frame = 0


Query: 34  VRCGPRDNRGPLVKGRTLSTEAIQAIQSLKRAERSDPTKLQQVLSNTLSRLLKADLVAAL 93
           +RCGPRDNRGPL+KGR LSTEAIQ+IQSLKRA R+  +    +    L RL+K+DL++ L
Sbjct: 31  IRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVS--LSLTLRPLRRLIKSDLISVL 90

Query: 94  KELLRQDRCPLALEVFTVVRSEY-GADLGMYAEVAAALSRNGAAEEIDRLVCDLDDGESK 153
           +ELLRQD C LA+ V + +R+EY   DL +YA++  AL+RN   +EIDRL+ ++D  + +
Sbjct: 91  RELLRQDYCTLAVHVLSTLRTEYPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQR 150

Query: 154 IQCDDKGLIKLIKAVVGGDRRESTVRIYRMMRRSGWGSAS-KADEYMVRVLSKGLRRLGE 213
              DDK L KLI+AVVG +RRES VR+Y +MR SGWGS S +ADEY+  VLSKGL RLGE
Sbjct: 151 --SDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 210

Query: 214 VELADEIN 220
            +LA +++
Sbjct: 211 PDLASQVS 214

[Close]

BLAST of Lcy05g002050 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-16
Identity = 64/203 (31.53%), Postives = 100/203 (49.26%), Query Frame = 0


Query: 41  NRGPLVKGRTLSTEAIQAIQSLKRAE--------------RSDPTKLQQVLSNTLSRLLK 100
           NR PL +GR LS EAIQA+Q+LKRA                S    L +V+ +   RLLK
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 554

Query: 101 ADLVAALKELLRQDRCPLALEVFTVVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVC 160
            D+VA L+ELLRQ+ C LAL+VF  +R E  Y   + MY ++   ++ N   EE++ L  
Sbjct: 555 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 614

Query: 161 DLDDGESKIQCDDKGLIKLIKAVVGGDRRESTVRIYRMMRRSGWGSASKADEYMVRVLSK 220
            +   E  +  + +    L+  ++     +  +  Y  M+  G+    + D    RVL  
Sbjct: 615 AM-KSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGY----EPDRASFRVLVL 674

Query: 221 GLRRLGEVELADEINREFQDLVG 228
           GL   GE+ L+  + ++  +  G
Sbjct: 675 GLESNGEMGLSAIVRQDAHEYYG 692

[Close]

BLAST of Lcy05g002050 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-09
Identity = 52/187 (27.81%), Postives = 96/187 (51.34%), Query Frame = 0


Query: 42  RGPLVKGRTL-STEAIQAIQSLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQD 101
           RGPL +G+ L   EA+  I  LKR  + D  KL + +   + RLLK D++A + EL RQ+
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 102 RCPLALEVFTVVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDK 161
              LA+++F V++ +  Y  D+ MY ++  +L+++   +E   L   +   +  +  D +
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMK--KENLFPDSQ 182

Query: 162 GLIKLIKAVVGGDRRESTVRIYRMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEI 221
              ++I+  +        + +Y  M +    S    +E   RVL KGL  L    L +++
Sbjct: 183 TYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPLLRNKV 240

Query: 222 NREFQDL 226
            ++F++L
Sbjct: 243 KKDFEEL 240

[Close]

BLAST of Lcy05g002050 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08
Identity = 49/177 (27.68%), Postives = 91/177 (51.41%), Query Frame = 0


Query: 51  LSTEAIQAIQSLKRAERSDPTKLQQVLSNTLSRLLKADLVAALKELLRQDRCPLALEVFT 110
           +S E + A + LKR + +   +L + + + +SRLLK+DLV+ L E  RQ++  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 111 VVRSE--YGADLGMYAEVAAALSRNGAAEEIDRLVCDLDDGESKIQCDDKGLIKLIKAVV 170
           VVR E  Y  D+  Y ++   L+RN   +E  ++  DL   + ++  D      L++  +
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLK--KEEVLFDQHTFGDLVRGFL 120

Query: 171 GGDRRESTVRIYRMMRRSGWGSASKADEYMVRVLSKGLRRLGEVELADEINREFQDL 226
             +     +R+Y  MR     S  +      RV+ KGL  +   EL +++  +F +L
Sbjct: 121 DNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

The following BLAST results are available for this feature:

BLAST of Lcy05g002050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVW6	1.4e-47	55.85	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9STF9	8.6e-08	27.81	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	1.9e-07	27.68	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lcy05g002050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQS0	1.7e-99	85.96	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JTE8	2.2e-99	85.96	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3CGD3	8.1e-94	82.68	uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=...	[more]
A0A5A7V0E2	1.2e-92	82.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K6N6	2.0e-92	81.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1	[more]

BLAST of Lcy05g002050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898717.1	2.0e-99	86.46	protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida]	[more]
XP_023522652.1	2.0e-99	85.96	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022954347.1	3.5e-99	85.96	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita moschata]	[more]
XP_022992386.1	4.5e-99	85.96	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita maxima]	[more]
KAG7014066.1	7.8e-99	85.53	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Lcy05g002050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27750.1	1.0e-48	55.85	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G09320.1	2.3e-16	31.53	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	6.1e-09	27.81	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	1.4e-08	27.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 50..225 e-value: 1.6E-31 score: 111.3
None	No IPR available	PANTHER	PTHR47594:SF3	PROTEIN THYLAKOID ASSEMBLY 8, CHLOROPLASTIC	coord: 11..226
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 11..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g002050.1	Lcy05g002050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding