Lcy05g001600 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g001600
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 1416740 .. 1418171 (+)
RNA-Seq ExpressionLcy05g001600
SyntenyLcy05g001600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGAAACGAAGGATTATTATCAGAGTTGATCAATCTAGTTTGGTGTTAGAACAATGGCCCAGCAAAGGTCTGGTGCTCTTGTTTTTGTTGCCCTTTTCGTAGTTCTCATGGTGGTTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGGTGAGCAAATCAGTATCATGAATTAATATAATGAGAATGTTCGGGAGTTGTTTTGAAAAAACAAAATACGTCGTTAGTGCTTATCGAGTTATAAGCACTGAATGACTTCAAGTGTACAATAACTTCAAAGTTTAGTTAGTTACTTTTTTTTAGTATTCGGGATTAAAAGTTACTTTTAAGAGCTTCGTAATAGTAATTTCAAAAAAAAAATAAAAAAGCTTCGTAATAGTCAAATGTTATTTTGATTAAGGCTTACTAGACGTCTTTCTTATTAGTGAGTTGAGATTTTTTTTTTTTTTATTTGAGTACATCAACATTTGGGAGTGGGGGGATTCGAACCTCTGACCTCATGGTCGAGGGTACATGCCAATTATCGCTGAGCTAAGCTCGCTTTGGCAGTGAGTTAGGATGTTGATGTGTGTTAAATGATGTGGGATCAAGGTTAGGTATTAGTTTGGCTCAAATTTAAGGTGAACAAATTGGGTTGACTTGAGGTAGTATTGATGCTTGTCCAAATCGGATGGAAAAGAAAAATAGTTAACCACAAACTAACAATAATGGGAACTAAATTTAAGATTTACTGAAACTATATAGAACTATATATGTAGAAGGTATATAAATGTTTAGGTAAGAGAATAAAAATAACAGTAAATTTGTTTTATACAGCTAAAGTCATACAAACTTTGAACCACACATAAGTGAAATAGGTAATTCAACTTAAACTTCTAATAAAACTATTCAATAACAACTCTTGATTGAAAAAAAAAATTGTTTTCCAGAATAGGGTTCCAAACAAACTATGTTATATGTTGTGGGGATATTGAATTGGATTGAATTAATTTGGTGTGTTTTGGTATGGCAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACCAGGCCTTTGCTGCAGTTGTTGCTCCAATTCTCAGTTGCCACCATGAATTCCATATCTCCAACATGAATCCAACTCGAGATGAATCCTTTAAACCAACTAAATAAACCATCGTATAATTTCTAAATAAAAAAGTTTTTTAGTTCAACAAGTACGAGAGTAAAGGTTCTTGACAATCATCAATCTAGTAGTAATTGATGCCTTATATCCATCGAACTATATGCTGGAATTGATATAATAAAAAGTCAGTTACTTCACTTTCATCATTGTGTGTATGTATTGTATTTAATCATTGTTGCTTTGTAATGGTAATTTGAATATTTCACCTTATTGTAATTATATTATAAATTGATCTCCC

mRNA sequence

TAAGAAACGAAGGATTATTATCAGAGTTGATCAATCTAGTTTGGTGTTAGAACAATGGCCCAGCAAAGGTCTGGTGCTCTTGTTTTTGTTGCCCTTTTCGTAGTTCTCATGGTGGTTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACCAGGCCTTTGCTGCAGTTGTTGCTCCAATTCTCAGTTGCCACCATGAATTCCATATCTCCAACATGAATCCAACTCGAGATGAATCCTTTAAACCAACTAAATAAACCATCGTATAATTTCTAAATAAAAAAGTTTTTTAGTTCAACAAGTACGAGAGTAAAGGTTCTTGACAATCATCAATCTAGTAGTAATTGATGCCTTATATCCATCGAACTATATGCTGGAATTGATATAATAAAAAGTCAGTTACTTCACTTTCATCATTGTGTGTATGTATTGTATTTAATCATTGTTGCTTTGTAATGGTAATTTGAATATTTCACCTTATTGTAATTATATTATAAATTGATCTCCC

Coding sequence (CDS)

ATGGCCCAGCAAAGGTCTGGTGCTCTTGTTTTTGTTGCCCTTTTCGTAGTTCTCATGGTGGTTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACCAGGCCTTTGCTGCAGTTGTTGCTCCAATTCTCAGTTGCCACCATGA

Protein sequence

MAQQRSGALVFVALFVVLMVVSSPLMLTSSHAARLAKQDPPMCPQCMCCTSPPPGLCCSCCSNSQLPP
Homology
BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: A0A0A0K9Q7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452240 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 1  MAQQRSGALV-FVALFVVLMVVSSP---LMLTSSHAARLAKQDPPMCPQCMCCTSPPPGL 60
          MA QR G  V FVA+F+VLMVVSS    +++T+SHAARLAK DPPMCPQCMCC+SPPPG 
Sbjct: 1  MALQRCGNNVGFVAVFIVLMVVSSAPDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPGF 60

Query: 61 CCSCCSNSQLPP 69
          CC CCSNSQLPP
Sbjct: 61 CCDCCSNSQLPP 72

BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: A0A5D3BXX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00520 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.8e-18
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 3  QQRSG--ALVFVALFVVLMVVSSP--LMLTSSHAARLAKQDPPMCPQCMCCTSPPPGLCC 62
          QQR G   +  VA+F+VLMVVSSP  +++T+SHAARLAK DPPMCPQCMCC+SPPPG CC
Sbjct: 4  QQRCGNNNIGLVAVFIVLMVVSSPDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPGFCC 63

Query: 63 SCCSNSQLPP 69
           CCSNSQLPP
Sbjct: 64 DCCSNSQLPP 73

BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: B9RQ96 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486940 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 12 VALFVVLMVVSSPLMLTSSHAARLAKQ--------DPPMCPQCMCCTSPPPGLCCSCCSN 68
          V +F++LMV+  PLM+  ++AAR A+Q        + PMCPQC CC++PPPG CC CC+N
Sbjct: 11 VTIFIILMVL--PLMVPPANAARFAQQGIIEVSLKEEPMCPQCTCCSAPPPGSCCKCCTN 70

BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: B9RQA1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486990 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.1e-05
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 10 VFVALFVVLMVVSSPLMLTSSHAARLAKQ--------DPPMCPQCMCCTSPPPGLCCSCC 68
          V   +F+V+MV+  PL++  ++AAR  +Q        + PMCPQC CC+SPPPG CC CC
Sbjct: 9  VMAFIFIVVMVL--PLVVPPANAARFTRQGIIEVSLKEDPMCPQCACCSSPPPGSCCKCC 68

BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: B9RQA2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1487000 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.9e-05
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 10 VFVALFVVLMVVSSPLMLTSSHAARLAKQ--------DPPMCPQCMCCTSPPPGLCCSCC 68
          V   +FV++MV+  PL +  ++AAR A Q        + P+CPQC CC++PPPG CC+CC
Sbjct: 9  VMATIFVIVMVL--PLTVPPAYAARYAHQGIIEVSLKEEPLCPQCQCCSAPPPGSCCNCC 68

BLAST of Lcy05g001600 vs. NCBI nr
Match: KAA0059465.1 (hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK03858.1 hypothetical protein E5676_scaffold347G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 9.9e-18
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 3  QQRSG--ALVFVALFVVLMVVSSP--LMLTSSHAARLAKQDPPMCPQCMCCTSPPPGLCC 62
          QQR G   +  VA+F+VLMVVSSP  +++T+SHAARLAK DPPMCPQCMCC+SPPPG CC
Sbjct: 4  QQRCGNNNIGLVAVFIVLMVVSSPDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPGFCC 63

Query: 63 SCCSNSQLPP 69
           CCSNSQLPP
Sbjct: 64 DCCSNSQLPP 73

BLAST of Lcy05g001600 vs. NCBI nr
Match: EEF46335.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 12 VALFVVLMVVSSPLMLTSSHAARLAKQ--------DPPMCPQCMCCTSPPPGLCCSCCSN 68
          V +F++LMV+  PLM+  ++AAR A+Q        + PMCPQC CC++PPPG CC CC+N
Sbjct: 11 VTIFIILMVL--PLMVPPANAARFAQQGIIEVSLKEEPMCPQCTCCSAPPPGSCCKCCTN 70

BLAST of Lcy05g001600 vs. NCBI nr
Match: EEF46340.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 10 VFVALFVVLMVVSSPLMLTSSHAARLAKQ--------DPPMCPQCMCCTSPPPGLCCSCC 68
          V   +F+V+MV+  PL++  ++AAR  +Q        + PMCPQC CC+SPPPG CC CC
Sbjct: 9  VMAFIFIVVMVL--PLVVPPANAARFTRQGIIEVSLKEDPMCPQCACCSSPPPGSCCKCC 68

BLAST of Lcy05g001600 vs. NCBI nr
Match: EEF46341.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 10 VFVALFVVLMVVSSPLMLTSSHAARLAKQ--------DPPMCPQCMCCTSPPPGLCCSCC 68
          V   +FV++MV+  PL +  ++AAR A Q        + P+CPQC CC++PPPG CC+CC
Sbjct: 9  VMATIFVIVMVL--PLTVPPAYAARYAHQGIIEVSLKEEPLCPQCQCCSAPPPGSCCNCC 68

BLAST of Lcy05g001600 vs. NCBI nr
Match: EEF46342.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0

Query: 1  MAQQRSGALVFVALFVVLMVVSSPLMLTSSHAARLAKQ-----DPPMCPQCMCCTSPPPG 60
          MA   +   + +   +++ V+  PLM+    AARLA Q     + PMCPQC CC++PPPG
Sbjct: 1  MAMTAANYQMSLTATILIFVMVLPLMVPPGDAARLAHQGLILKEEPMCPQCTCCSAPPPG 60

Query: 61 LCCSCCSNSQLP 68
           CC CC+ S  P
Sbjct: 61 SCCKCCTASVQP 72

BLAST of Lcy05g001600 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 1  MAQQRSGALVFVALFVVLMVVSSPLMLTSSHAARLAK----QDPPMCPQCMCCTSPPPGL 60
          MA   SG  +F+ LFV+ +++  P  L+ S+A R+ +       P+CP C+CC   P G 
Sbjct: 1  MASFHSGKSIFLKLFVLFLLLVLP--LSQSNATRIPRAPISSRRPICPACVCCEPAPLGS 60

Query: 61 CCSCCSN 64
          CC CC++
Sbjct: 61 CCRCCAS 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K9Q73.7e-1873.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452240 PE=4 SV=1[more]
A0A5D3BXX84.8e-1872.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
B9RQ968.5e-0750.00Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486940 PE=4 SV=1[more]
B9RQA16.1e-0545.45Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486990 PE=4 SV=1[more]
B9RQA27.9e-0545.45Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1487000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0059465.19.9e-1872.86hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK038... [more]
EEF46335.11.8e-0650.00conserved hypothetical protein [Ricinus communis][more]
EEF46340.11.3e-0445.45conserved hypothetical protein [Ricinus communis][more]
EEF46341.11.6e-0445.45conserved hypothetical protein [Ricinus communis][more]
EEF46342.12.1e-0441.67conserved hypothetical protein [Ricinus communis][more]
Match NameE-valueIdentityDescription
AT1G51920.11.0e-0437.31unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g001600.1Lcy05g001600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane