Lcy05g001600 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAGAAACGAAGGATTATTATCAGAGTTGATCAATCTAGTTTGGTGTTAGAACAATGGCCCAGCAAAGGTCTGGTGCTCTTGTTTTTGTTGCCCTTTTCGTAGTTCTCATGGTGGTTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGGTGAGCAAATCAGTATCATGAATTAATATAATGAGAATGTTCGGGAGTTGTTTTGAAAAAACAAAATACGTCGTTAGTGCTTATCGAGTTATAAGCACTGAATGACTTCAAGTGTACAATAACTTCAAAGTTTAGTTAGTTACTTTTTTTTAGTATTCGGGATTAAAAGTTACTTTTAAGAGCTTCGTAATAGTAATTTCAAAAAAAAAATAAAAAAGCTTCGTAATAGTCAAATGTTATTTTGATTAAGGCTTACTAGACGTCTTTCTTATTAGTGAGTTGAGATTTTTTTTTTTTTTATTTGAGTACATCAACATTTGGGAGTGGGGGGATTCGAACCTCTGACCTCATGGTCGAGGGTACATGCCAATTATCGCTGAGCTAAGCTCGCTTTGGCAGTGAGTTAGGATGTTGATGTGTGTTAAATGATGTGGGATCAAGGTTAGGTATTAGTTTGGCTCAAATTTAAGGTGAACAAATTGGGTTGACTTGAGGTAGTATTGATGCTTGTCCAAATCGGATGGAAAAGAAAAATAGTTAACCACAAACTAACAATAATGGGAACTAAATTTAAGATTTACTGAAACTATATAGAACTATATATGTAGAAGGTATATAAATGTTTAGGTAAGAGAATAAAAATAACAGTAAATTTGTTTTATACAGCTAAAGTCATACAAACTTTGAACCACACATAAGTGAAATAGGTAATTCAACTTAAACTTCTAATAAAACTATTCAATAACAACTCTTGATTGAAAAAAAAAATTGTTTTCCAGAATAGGGTTCCAAACAAACTATGTTATATGTTGTGGGGATATTGAATTGGATTGAATTAATTTGGTGTGTTTTGGTATGGCAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACCAGGCCTTTGCTGCAGTTGTTGCTCCAATTCTCAGTTGCCACCATGAATTCCATATCTCCAACATGAATCCAACTCGAGATGAATCCTTTAAACCAACTAAATAAACCATCGTATAATTTCTAAATAAAAAAGTTTTTTAGTTCAACAAGTACGAGAGTAAAGGTTCTTGACAATCATCAATCTAGTAGTAATTGATGCCTTATATCCATCGAACTATATGCTGGAATTGATATAATAAAAAGTCAGTTACTTCACTTTCATCATTGTGTGTATGTATTGTATTTAATCATTGTTGCTTTGTAATGGTAATTTGAATATTTCACCTTATTGTAATTATATTATAAATTGATCTCCC TAAGAAACGAAGGATTATTATCAGAGTTGATCAATCTAGTTTGGTGTTAGAACAATGGCCCAGCAAAGGTCTGGTGCTCTTGTTTTTGTTGCCCTTTTCGTAGTTCTCATGGTGGTTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACCAGGCCTTTGCTGCAGTTGTTGCTCCAATTCTCAGTTGCCACCATGAATTCCATATCTCCAACATGAATCCAACTCGAGATGAATCCTTTAAACCAACTAAATAAACCATCGTATAATTTCTAAATAAAAAAGTTTTTTAGTTCAACAAGTACGAGAGTAAAGGTTCTTGACAATCATCAATCTAGTAGTAATTGATGCCTTATATCCATCGAACTATATGCTGGAATTGATATAATAAAAAGTCAGTTACTTCACTTTCATCATTGTGTGTATGTATTGTATTTAATCATTGTTGCTTTGTAATGGTAATTTGAATATTTCACCTTATTGTAATTATATTATAAATTGATCTCCC ATGGCCCAGCAAAGGTCTGGTGCTCTTGTTTTTGTTGCCCTTTTCGTAGTTCTCATGGTGGTTTCTTCTCCTCTCATGCTAACCAGCTCCCATGCAGCTCGTTTGGCCAAACAAGATCCACCAATGTGTCCTCAATGCATGTGTTGCACTTCTCCACCACCAGGCCTTTGCTGCAGTTGTTGCTCCAATTCTCAGTTGCCACCATGA MAQQRSGALVFVALFVVLMVVSSPLMLTSSHAARLAKQDPPMCPQCMCCTSPPPGLCCSCCSNSQLPP Homology
BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: A0A0A0K9Q7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452240 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18 Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0
BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: A0A5D3BXX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00520 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 4.8e-18 Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0
BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: B9RQ96 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486940 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07 Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0
BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: B9RQA1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486990 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 6.1e-05 Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Lcy05g001600 vs. ExPASy TrEMBL
Match: B9RQA2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1487000 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 7.9e-05 Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Lcy05g001600 vs. NCBI nr
Match: KAA0059465.1 (hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK03858.1 hypothetical protein E5676_scaffold347G00520 [Cucumis melo var. makuwa]) HSP 1 Score: 99.8 bits (247), Expect = 9.9e-18 Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0
BLAST of Lcy05g001600 vs. NCBI nr
Match: EEF46335.1 (conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06 Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0
BLAST of Lcy05g001600 vs. NCBI nr
Match: EEF46340.1 (conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04 Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Lcy05g001600 vs. NCBI nr
Match: EEF46341.1 (conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04 Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Lcy05g001600 vs. NCBI nr
Match: EEF46342.1 (conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04 Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0
BLAST of Lcy05g001600 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04 Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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