Lcy05g001590 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g001590
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	cryptdin protein-related
Location	Chr05: 1405068 .. 1406078 (+)
RNA-Seq Expression	Lcy05g001590
Synteny	Lcy05g001590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACGAACGACCATTTCTCTTCAACTTCCTTCAATGGCTGCAGCTAAATTCTCTTTGAGTTCCGTTTTGGTGACGGTTCTCGTGTTCGCCTTAGTTCTGTCTCCCATGACGATCTCCCCTGTTGATGCTACTCGTGAGCTTCTACAAGGTAGAAATTTATTAAATCACTCCTACACTCAAAAATTTATATTTATAAACAATTGTACTACTCTAAGATAGTTCTTAAAAAATCATTAAAGAAACGAGTCTTTTTTTTTTTTTTGACAATATGTGAGGTGGGGGGATTCGAACCACAGACCTTGTGGTCATCTCAGTACATGTCAGTTGAGCTATACTCTTGTTGGTAAAGAAACGAGAGTCTTTGTGAAATTATTTGGTAAACTAATACATATTGTACTTATTGTCATTAACTTTTGCGACAATTGAGAGAGTGCCTTTTTTTTTCTCTTCTTTTAAGAAAATGACGATTGAGTTTTTAAATTTAAGCTTTTGGATTTGGTGATGCAGTTAATAGGCCAATATGCCCGGCCTGTGTGTGCTGCGAGCCACCACCGGCGGGCTCCTGCTGCCGATGTTGCGCTTCTCCGATTGAAACTTCGTCTCAGAATGGGTCGCCATGAAAACCTGTTAGCTCATGAAAGTAAAAATGAGATTTGCAGATCATGATTTGAAGAATAAGGAGGCTCTCTCCATGCAAAATACATACAGCTTTGTTTTAGTTGTTGGTTAATGTAAGGTTCAAATTCAACTAGTATAAAGTTTATACTAATCATAAATTTGGTTCTTGGAGATATTTGTGATATAATAATAATAATATTTTAAAAGAGCAATCTTTTTAACTAAACTAACATGGTAGTTTAATTTTAGGCCAAATTGATGATAACTTAATCGACTAAGACACATATACCTTCGATCAAGAGGTCAGAGATTTAAATTCCTCTCCATATAACTATAACTCAGAAAACTAAAAGAAAGGGCCTTAAAAATTTAATAAAAGAGCATGTTGAAACT

mRNA sequence

CAACGAACGACCATTTCTCTTCAACTTCCTTCAATGGCTGCAGCTAAATTCTCTTTGAGTTCCGTTTTGGTGACGGTTCTCGTGTTCGCCTTAGTTCTGTCTCCCATGACGATCTCCCCTGTTGATGCTACTCGTGAGCTTCTACAAGTTAATAGGCCAATATGCCCGGCCTGTGTGTGCTGCGAGCCACCACCGGCGGGCTCCTGCTGCCGATGTTGCGCTTCTCCGATTGAAACTTCGTCTCAGAATGGGTCGCCATGAAAACCTGTTAGCTCATGAAAGTAAAAATGAGATTTGCAGATCATGATTTGAAGAATAAGGAGGCTCTCTCCATGCAAAATACATACAGCTTTGTTTTAGTTGTTGGTTAATGTAAGGTTCAAATTCAACTAGTATAAAGTTTATACTAATCATAAATTTGGTTCTTGGAGATATTTGTGATATAATAATAATAATATTTTAAAAGAGCAATCTTTTTAACTAAACTAACATGGTAGTTTAATTTTAGGCCAAATTGATGATAACTTAATCGACTAAGACACATATACCTTCGATCAAGAGGTCAGAGATTTAAATTCCTCTCCATATAACTATAACTCAGAAAACTAAAAGAAAGGGCCTTAAAAATTTAATAAAAGAGCATGTTGAAACT

Coding sequence (CDS)

ATGGCTGCAGCTAAATTCTCTTTGAGTTCCGTTTTGGTGACGGTTCTCGTGTTCGCCTTAGTTCTGTCTCCCATGACGATCTCCCCTGTTGATGCTACTCGTGAGCTTCTACAAGTTAATAGGCCAATATGCCCGGCCTGTGTGTGCTGCGAGCCACCACCGGCGGGCTCCTGCTGCCGATGTTGCGCTTCTCCGATTGAAACTTCGTCTCAGAATGGGTCGCCATGA

Protein sequence

MAAAKFSLSSVLVTVLVFALVLSPMTISPVDATRELLQVNRPICPACVCCEPPPAGSCCRCCASPIETSSQNGSP

Homology

[Close]

BLAST of Lcy05g001590 vs. ExPASy TrEMBL
Match: A0A0A0K7Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.7e-21
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MAAAKFSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSC 60
          MA  K  L+SV +TVLVFA+VLSPMT     ATR LL Q+NR PICPACVCCEPPPAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCASPIETSSQNGSP 76
          CRCCASPI+TSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lcy05g001590 vs. ExPASy TrEMBL
Match: A0A6J1JPW7 (uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.6e-20
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 6  FSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSCCRCCA 65
          FS  S+ VTVLVFA+VLSPMTIS  +ATR LL QVNR PICPACVCCEP PAGSCCRCCA
Sbjct: 7  FSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCRCCA 66

Query: 66 SPIETSSQNGSP 76
          +PI+TSSQNGSP
Sbjct: 67 TPIQTSSQNGSP 78

[Close]

BLAST of Lcy05g001590 vs. ExPASy TrEMBL
Match: A0A6J1GR88 (uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC111456398 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 5  KFSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSCCRCC 64
          KF+ +S+ VTVLVFA+VLSP TIS V+ATR LL QVNR PICPACVCCEP PAGSCCRCC
Sbjct: 6  KFTPTSIFVTVLVFAMVLSPTTISTVNATRVLLQQVNRPPICPACVCCEPAPAGSCCRCC 65

Query: 65 ASPIETSSQNGSP 76
          A+PI+TSSQ+GSP
Sbjct: 66 ATPIQTSSQSGSP 78

[Close]

BLAST of Lcy05g001590 vs. ExPASy TrEMBL
Match: A0A5A7UWJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00530 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.8e-19
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MAAAKFSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSC 60
          MA  K  ++SV +TVLVFA++LSPMTI    ATR LL Q+NR PICPACVCCEP PAGSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCASPIETSSQNGSP 76
          CRCCASPI+TSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lcy05g001590 vs. ExPASy TrEMBL
Match: A0A6J1CSH3 (uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013890 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MAAAKFSLSSVLVTVLVFALVLSPMTISPVDATRELLQVNR-PICPACVCCEPPPAGSCC 60
          MAA KFSLSS+ VTVLVF +VLSPM IS   ATR  LQV R PICPACVCC+PPP GSCC
Sbjct: 5  MAAPKFSLSSIFVTVLVFTMVLSPM-ISTAAATRLPLQVRRPPICPACVCCKPPPPGSCC 64

Query: 61 R-CCASPIETSSQNGSP 76
          + CCA+PIETSSQNGSP
Sbjct: 65 KQCCATPIETSSQNGSP 80

[Close]

BLAST of Lcy05g001590 vs. NCBI nr
Match: XP_038896231.1 (uncharacterized protein LOC120084509 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-22
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MAAAKFSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSC 60
          MA+AKFSL+SVL+TVLVF +VLSPMTI   +ATR LL Q+NR PICPACVCCEP PAGSC
Sbjct: 1  MASAKFSLTSVLMTVLVFTMVLSPMTIPTANATRVLLQQINRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCASPIETSSQNGSP 76
          CRCCASPI+TSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lcy05g001590 vs. NCBI nr
Match: KGN45568.1 (hypothetical protein Csa_016454 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MAAAKFSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSC 60
          MA  K  L+SV +TVLVFA+VLSPMT     ATR LL Q+NR PICPACVCCEPPPAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCASPIETSSQNGSP 76
          CRCCASPI+TSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Lcy05g001590 vs. NCBI nr
Match: XP_022992462.1 (uncharacterized protein LOC111488758 [Cucurbita maxima])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 6  FSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSCCRCCA 65
          FS  S+ VTVLVFA+VLSPMTIS  +ATR LL QVNR PICPACVCCEP PAGSCCRCCA
Sbjct: 7  FSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCRCCA 66

Query: 66 SPIETSSQNGSP 76
          +PI+TSSQNGSP
Sbjct: 67 TPIQTSSQNGSP 78

[Close]

BLAST of Lcy05g001590 vs. NCBI nr
Match: XP_022954010.1 (uncharacterized protein LOC111456398 [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-19
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 5  KFSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSCCRCC 64
          KF+ +S+ VTVLVFA+VLSP TIS V+ATR LL QVNR PICPACVCCEP PAGSCCRCC
Sbjct: 6  KFTPTSIFVTVLVFAMVLSPTTISTVNATRVLLQQVNRPPICPACVCCEPAPAGSCCRCC 65

Query: 65 ASPIETSSQNGSP 76
          A+PI+TSSQ+GSP
Sbjct: 66 ATPIQTSSQSGSP 78

[Close]

BLAST of Lcy05g001590 vs. NCBI nr
Match: KAG6575497.1 (hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 7.6e-19
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 5  KFSLSSVLVTVLVFALVLSPMTISPVDATRELL-QVNR-PICPACVCCEPPPAGSCCRCC 64
          KF+ +S+ VTVLVFA+VLSP TIS  +ATR LL QVNR PICPACVCCEP PAGSCCRCC
Sbjct: 6  KFTPTSIFVTVLVFAMVLSPTTISTANATRVLLQQVNRPPICPACVCCEPAPAGSCCRCC 65

Query: 65 ASPIETSSQNGSP 76
          A+PI+TSSQ+GSP
Sbjct: 66 ATPIQTSSQSGSP 78

[Close]

BLAST of Lcy05g001590 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-09
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 1  MAAAKFSLSSVLVTVLVFALVLSPMTIS-PVDATRELLQVNRPICPACVCCEPPPAGSCC 60
          MA+     S  L   ++F L++ P++ S      R  +   RPICPACVCCEP P GSCC
Sbjct: 1  MASFHSGKSIFLKLFVLFLLLVLPLSQSNATRIPRAPISSRRPICPACVCCEPAPLGSCC 60

Query: 61 RCCASPIETSSQNGS 75
          RCCASPI T + + S
Sbjct: 61 RCCASPIVTQTHHHS 75

[Close]

BLAST of Lcy05g001590 vs. TAIR 10
Match: AT1G51915.1 (cryptdin protein-related )

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 1  MAAAKFSLSSVLVTVLVFALVLSPMTISPVDATRELLQVN----RPICPACVCCEPPPAG 60
          MA  +F  S++L++VLV ALVLSP  I P  ATR  L       R +CP+CVCC P P G
Sbjct: 1  MATERF--STMLISVLVLALVLSP--ILPCQATRAHLDAETRMLRRVCPSCVCCAPAPRG 60

Query: 61 SCCRC 62
          +CC C
Sbjct: 61 ACCPC 61

The following BLAST results are available for this feature:

BLAST of Lcy05g001590 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g001590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y9	8.7e-21	76.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1	[more]
A0A6J1JPW7	5.6e-20	80.56	uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758...	[more]
A0A6J1GR88	1.3e-19	78.08	uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]
A0A5A7UWJ7	4.8e-19	74.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CSH3	1.4e-18	76.62	uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Lcy05g001590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896231.1	4.3e-22	80.52	uncharacterized protein LOC120084509 [Benincasa hispida]	[more]
KGN45568.1	1.8e-20	76.62	hypothetical protein Csa_016454 [Cucumis sativus]	[more]
XP_022992462.1	1.2e-19	80.56	uncharacterized protein LOC111488758 [Cucurbita maxima]	[more]
XP_022954010.1	2.6e-19	78.08	uncharacterized protein LOC111456398 [Cucurbita moschata]	[more]
KAG6575497.1	7.6e-19	76.71	hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy05g001590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51920.1	2.6e-09	46.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51915.1	3.2e-07	50.77	cryptdin protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36328	TRANSMEMBRANE PROTEIN	coord: 4..75
None	No IPR available	PANTHER	PTHR36328:SF1	TRANSMEMBRANE PROTEIN	coord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g001590.1	Lcy05g001590.1	mRNA