Lcy04g024440 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g024440
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1
Location	Chr04: 55630254 .. 55631170 (-)
RNA-Seq Expression	Lcy04g024440
Synteny	Lcy04g024440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGAGAAAAGGAAACTTGTTTTAAGGCTTATTCAGATGCTAGAAGTTCATCCTTAGTAAATTTTTAATACAGGGATCAGGGTAGGCGTTCATTTGAGCTAATTAAGCTGTATGTTTCTGTTTCTGAATGTCTTAGCAGACAAAATTTAGTAGTTGTACATGTCTTCTTTCATGAACTGATGGCATTTTACGATCAGTTTCAATCCCGACATGATTTTTTATAATTGATCATCTGTGATAAGAAGATATTGTCGTTTTATCTGGTTGGTTTTATGTTTTGTTCAGCTGTATTCAGCGATTGATTTGATTCTGATTTTCTTCTTTTCTTGGAAAGATAGTTTCTTATCTCACCACGTTAGATATTCACAAGATTGAGACATTGAGTTACACTTCCTTTTCCTTTCTTTCTTTGGTACTTTGAATGTTAAATCACCCTGGCTCCTTAAATTGCGCGTGTTGCAGCCAGTAGTTTATGTAGCAGAAAGTGCGATAAGCTCGGGGACTGCCGGTTCTTCTTCTGAAGTAGCTGAGAACACATTGGCAATTGCTGGTGGACTTGCACTCGCTTCGGTTGCTGCAGCTTCAGCCATACTGCTTCAAGTTGGTAAAAAACCACCTGAAGTGAAAACTGTTGAATACACTGGACCCTCACTCAGTTACTACATTAACAAGTTCAATAAACTATTTTCAAAAAAAAAAAAAAAAAAAAAAGAGTTCAATACACGAGAAATTATCCAACCACCTGCACAAAACGAACTCGAATCCTCCTCTCAAAGTCGACAGCGTCGCTCCTGAAGTAACAGAGATTCAAATTCAATCAGACATTGTTGCTCCTGAAGTAACAGATATTCAAGTTGAATCCCAAACGACAGTGCTTTCCTCTCCAGCTGTGACCCAATGTCTCGTAGGCTAA

mRNA sequence

ATGGCGGGAGAAAAGGAAACTTGTTTTAAGGCTTATTCAGATGCTAGAAGTTCATCCTTACCAGTAGTTTATGTAGCAGAAAGTGCGATAAGCTCGGGGACTGCCGGTTCTTCTTCTGAAGTAGCTGAGAACACATTGGCAATTGCTGGTGGACTTGCACTCGCTTCGGTTGCTGCAGCTTCAGCCATACTGCTTCAAAGTTCAATACACGAGAAATTATCCAACCACCTGCACAAAACGAACTCGAATCCTCCTCTCAAAGTCGACAGCGTCGCTCCTGAAGTAACAGAGATTCAAATTCAATCAGACATTGTTGCTCCTGAAGTAACAGATATTCAAGTTGAATCCCAAACGACAGTGCTTTCCTCTCCAGCTGTGACCCAATGTCTCGTAGGCTAA

Coding sequence (CDS)

ATGGCGGGAGAAAAGGAAACTTGTTTTAAGGCTTATTCAGATGCTAGAAGTTCATCCTTACCAGTAGTTTATGTAGCAGAAAGTGCGATAAGCTCGGGGACTGCCGGTTCTTCTTCTGAAGTAGCTGAGAACACATTGGCAATTGCTGGTGGACTTGCACTCGCTTCGGTTGCTGCAGCTTCAGCCATACTGCTTCAAAGTTCAATACACGAGAAATTATCCAACCACCTGCACAAAACGAACTCGAATCCTCCTCTCAAAGTCGACAGCGTCGCTCCTGAAGTAACAGAGATTCAAATTCAATCAGACATTGTTGCTCCTGAAGTAACAGATATTCAAGTTGAATCCCAAACGACAGTGCTTTCCTCTCCAGCTGTGACCCAATGTCTCGTAGGCTAA

Protein sequence

MAGEKETCFKAYSDARSSSLPVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQSSIHEKLSNHLHKTNSNPPLKVDSVAPEVTEIQIQSDIVAPEVTDIQVESQTTVLSSPAVTQCLVG

Homology

[Close]

BLAST of Lcy04g024440 vs. ExPASy Swiss-Prot
Match: Q9FL44 (Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=MPH1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.2e-07
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQSSIHEKLSNHLHKT 80
           P VYVAESAISSGTAGSS++ AENT AI  G+AL +VAAAS+ILLQ          + K 
Sbjct: 103 PAVYVAESAISSGTAGSSADGAENTAAIVAGIALIAVAAASSILLQ----------VGKD 162

Query: 81  NSNPPLKVDSVAPEVTEIQIQ---SDIVAPEVTDIQ-----VESQTTVLSSPAVTQ 129
               P  VD   P ++    +   S+IV P    +       E +T++  +P+V Q
Sbjct: 163 APTRPKAVDYSGPSLSYYINKFKPSEIVQPSTPSVTEAPPVAELETSLPETPSVAQ 208

[Close]

BLAST of Lcy04g024440 vs. ExPASy TrEMBL
Match: A0A5A7SZM6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G008040 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           PVVYVAESAISSGTAGSSSE AENTLAIAGG+AL +VAAAS+ILLQ              
Sbjct: 105 PVVYVAESAISSGTAGSSSEGAENTLAIAGGIALIAVAAASSILLQVGKKPPEVKTVEYT 164

Query: 81  HEKLSNHLHKTNSNPPL-----------KVDSVAPEVTEIQIQSDIVAPEVTDIQVESQT 128
              LS +++K N+   +           +VD V PEVTEIQ QSDI APEVTDIQVESQT
Sbjct: 165 GPSLSYYINKFNTREIVQPVQSEPESSSQVDGVTPEVTEIQSQSDIPAPEVTDIQVESQT 224

[Close]

BLAST of Lcy04g024440 vs. ExPASy TrEMBL
Match: A0A1S3BH89 (uncharacterized protein LOC103489534 OS=Cucumis melo OX=3656 GN=LOC103489534 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           PVVYVAESAISSGTAGSSSE AENTLAIAGG+AL +VAAAS+ILLQ              
Sbjct: 105 PVVYVAESAISSGTAGSSSEGAENTLAIAGGIALIAVAAASSILLQVGKKPPEVKTVEYT 164

Query: 81  HEKLSNHLHKTNSNPPL-----------KVDSVAPEVTEIQIQSDIVAPEVTDIQVESQT 128
              LS +++K N+   +           +VD V PEVTEIQ QSDI APEVTDIQVESQT
Sbjct: 165 GPSLSYYINKFNTREIVQPVQSEPESSSQVDGVTPEVTEIQSQSDIPAPEVTDIQVESQT 224

[Close]

BLAST of Lcy04g024440 vs. ExPASy TrEMBL
Match: A0A0A0KTT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G626040 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 75/133 (56.39%), Postives = 89/133 (66.92%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           PVVYVAESAISSGTAGSSSE AENTLAIAGG+AL +VA AS+ILLQ              
Sbjct: 106 PVVYVAESAISSGTAGSSSEGAENTLAIAGGIALIAVAVASSILLQVGKKPPEVKTVEYT 165

Query: 81  HEKLSNHLHKTNS----NPPL--------KVDSVAPEVTEIQIQSDIVAPEVTDIQVESQ 131
              LS +++K N+     PP+        ++D V P+VT+IQIQ DI APEVTD+QVESQ
Sbjct: 166 GPSLSYYINKFNTREIVQPPVQSEPESSSQIDGVTPQVTQIQIQPDIPAPEVTDVQVESQ 225

[Close]

BLAST of Lcy04g024440 vs. ExPASy TrEMBL
Match: A0A6J1CAZ8 (uncharacterized protein LOC111009949 OS=Momordica charantia OX=3673 GN=LOC111009949 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19
Identity = 71/116 (61.21%), Postives = 82/116 (70.69%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           P VYVAESAISSGTAGSSSE AENTLA+AGGLAL SVAAASAILLQ              
Sbjct: 106 PAVYVAESAISSGTAGSSSEGAENTLAVAGGLALLSVAAASAILLQVGKKPPEVKTVEYT 165

Query: 81  HEKLSNHLHKTNSNPPLKVDS--------VAPEVTEIQIQSDIVAPEVTDIQVESQ 118
              LS +++K N+  P++ +         +APEVTEIQ+QSDIVAPEVTDIQVE+Q
Sbjct: 166 GPSLSYYINKFNTQLPVQSEPESSSQDNVIAPEVTEIQVQSDIVAPEVTDIQVETQ 221

[Close]

BLAST of Lcy04g024440 vs. ExPASy TrEMBL
Match: A0A6J1JU57 (protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 OS=Cucurbita maxima OX=3661 GN=LOC111487878 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.1e-18
Identity = 78/134 (58.21%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           PVVYVAESAISSG AGSSSE AENTLAIAGGLAL +VAAAS+ILLQ              
Sbjct: 106 PVVYVAESAISSGNAGSSSEGAENTLAIAGGLALIAVAAASSILLQVGKKPPEVKIVEYT 165

Query: 81  HEKLSNHLHKTNS----NPPLK------------VDSVAPE-VTEIQIQSDIVAPE-VTD 126
              LS +++K  +     PP++            VD VAPE VTE+QIQSDIVAPE VT+
Sbjct: 166 GPSLSYYINKFTTPAILQPPVRTESESKLESSSQVDGVAPEAVTEVQIQSDIVAPEVVTE 225

[Close]

BLAST of Lcy04g024440 vs. NCBI nr
Match: XP_008446990.1 (PREDICTED: uncharacterized protein LOC103489534 [Cucumis melo] >KAA0034777.1 uncharacterized protein E6C27_scaffold65G008040 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-19
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           PVVYVAESAISSGTAGSSSE AENTLAIAGG+AL +VAAAS+ILLQ              
Sbjct: 105 PVVYVAESAISSGTAGSSSEGAENTLAIAGGIALIAVAAASSILLQVGKKPPEVKTVEYT 164

Query: 81  HEKLSNHLHKTNSNPPL-----------KVDSVAPEVTEIQIQSDIVAPEVTDIQVESQT 128
              LS +++K N+   +           +VD V PEVTEIQ QSDI APEVTDIQVESQT
Sbjct: 165 GPSLSYYINKFNTREIVQPVQSEPESSSQVDGVTPEVTEIQSQSDIPAPEVTDIQVESQT 224

[Close]

BLAST of Lcy04g024440 vs. NCBI nr
Match: XP_038891294.1 (protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-19
Identity = 77/129 (59.69%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           PVVYVAESAISSGTAGSSSE AENTLAIAGG+AL +VAAAS+ILLQ              
Sbjct: 106 PVVYVAESAISSGTAGSSSEGAENTLAIAGGIALIAVAAASSILLQVGKKPPEVKTVEYT 165

Query: 81  HEKLSNHLHKTNS----NPPL--------KVDSVAPEVTEIQIQSDIVAPEVTDIQVESQ 127
              LS +++K N+     PP+        +V+ VAPEVTEIQIQSD  APEVTD+Q ESQ
Sbjct: 166 GPSLSYYINKFNAREIVQPPVQSEPESSSQVNGVAPEVTEIQIQSDTAAPEVTDVQDESQ 225

[Close]

BLAST of Lcy04g024440 vs. NCBI nr
Match: XP_004142377.1 (protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 [Cucumis sativus] >KGN52344.1 hypothetical protein Csa_009385 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-19
Identity = 75/133 (56.39%), Postives = 89/133 (66.92%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           PVVYVAESAISSGTAGSSSE AENTLAIAGG+AL +VA AS+ILLQ              
Sbjct: 106 PVVYVAESAISSGTAGSSSEGAENTLAIAGGIALIAVAVASSILLQVGKKPPEVKTVEYT 165

Query: 81  HEKLSNHLHKTNS----NPPL--------KVDSVAPEVTEIQIQSDIVAPEVTDIQVESQ 131
              LS +++K N+     PP+        ++D V P+VT+IQIQ DI APEVTD+QVESQ
Sbjct: 166 GPSLSYYINKFNTREIVQPPVQSEPESSSQIDGVTPQVTQIQIQPDIPAPEVTDVQVESQ 225

[Close]

BLAST of Lcy04g024440 vs. NCBI nr
Match: XP_022138876.1 (uncharacterized protein LOC111009949 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-19
Identity = 71/116 (61.21%), Postives = 82/116 (70.69%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           P VYVAESAISSGTAGSSSE AENTLA+AGGLAL SVAAASAILLQ              
Sbjct: 106 PAVYVAESAISSGTAGSSSEGAENTLAVAGGLALLSVAAASAILLQVGKKPPEVKTVEYT 165

Query: 81  HEKLSNHLHKTNSNPPLKVDS--------VAPEVTEIQIQSDIVAPEVTDIQVESQ 118
              LS +++K N+  P++ +         +APEVTEIQ+QSDIVAPEVTDIQVE+Q
Sbjct: 166 GPSLSYYINKFNTQLPVQSEPESSSQDNVIAPEVTEIQVQSDIVAPEVTDIQVETQ 221

[Close]

BLAST of Lcy04g024440 vs. NCBI nr
Match: XP_023523079.1 (protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 79/134 (58.96%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQ-----------SSI 80
           PVVYVAESAISSGTAG+SSE AENTLAIAGGLAL +VAAAS+ILLQ              
Sbjct: 106 PVVYVAESAISSGTAGTSSEGAENTLAIAGGLALIAVAAASSILLQVGKKPPEIKVVEYT 165

Query: 81  HEKLSNHLHKTNS----NPPLK------------VDSVAPE-VTEIQIQSDIVAPE-VTD 126
              LS +++K  +     PP++            VDSVAPE VTE+QIQSDIVAPE VT+
Sbjct: 166 GPSLSYYINKFTTPAILQPPVRAESESEPESSSQVDSVAPEVVTEVQIQSDIVAPEVVTE 225

[Close]

BLAST of Lcy04g024440 vs. TAIR 10
Match: AT5G07020.1 (proline-rich family protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-08
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 21  PVVYVAESAISSGTAGSSSEVAENTLAIAGGLALASVAAASAILLQSSIHEKLSNHLHKT 80
           P VYVAESAISSGTAGSS++ AENT AI  G+AL +VAAAS+ILLQ          + K 
Sbjct: 103 PAVYVAESAISSGTAGSSADGAENTAAIVAGIALIAVAAASSILLQ----------VGKD 162

Query: 81  NSNPPLKVDSVAPEVTEIQIQ---SDIVAPEVTDIQ-----VESQTTVLSSPAVTQ 129
               P  VD   P ++    +   S+IV P    +       E +T++  +P+V Q
Sbjct: 163 APTRPKAVDYSGPSLSYYINKFKPSEIVQPSTPSVTEAPPVAELETSLPETPSVAQ 208

The following BLAST results are available for this feature:

BLAST of Lcy04g024440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL44	3.2e-07	42.24	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Lcy04g024440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZM6	7.6e-20	59.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BH89	7.6e-20	59.69	uncharacterized protein LOC103489534 OS=Cucumis melo OX=3656 GN=LOC103489534 PE=...	[more]
A0A0A0KTT1	1.7e-19	56.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G626040 PE=4 SV=1	[more]
A0A6J1CAZ8	2.9e-19	61.21	uncharacterized protein LOC111009949 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1JU57	7.1e-18	58.21	protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Lcy04g024440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446990.1	1.6e-19	59.69	PREDICTED: uncharacterized protein LOC103489534 [Cucumis melo] >KAA0034777.1 unc...	[more]
XP_038891294.1	2.7e-19	59.69	protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 [Benincasa hispida]	[more]
XP_004142377.1	3.5e-19	56.39	protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 [Cucumis sativus] >KGN52344.1 hyp...	[more]
XP_022138876.1	6.0e-19	61.21	uncharacterized protein LOC111009949 [Momordica charantia]	[more]
XP_023523079.1	3.0e-18	58.96	protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy04g024440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07020.1	2.3e-08	42.24	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038936	Protein maintenance of PSII under high light 1	PANTHER	PTHR35753	PROTEIN MAINTENANCE OF PSII UNDER HIGH LIGHT 1	coord: 20..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g024440.1	Lcy04g024440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061635	regulation of protein complex stability
cellular_component	GO:0009535	chloroplast thylakoid membrane