Lcy04g024360 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g024360
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	root hair specific 4
Location	Chr04: 55504490 .. 55505326 (-)
RNA-Seq Expression	Lcy04g024360
Synteny	Lcy04g024360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTCCACCCTCTGATACATTACGACCTCTATCTGGTGGCACCACTAGCAGAAGCTACGAATTTGTTGGGGATGTGGTTATTGAGTTGTCGACGCAATTGAAGTTGGAAAGCTACAGTGTCCCAAACTCGGCCTATTCATCCCCTCGGTTGGGCAGTGGACTGAGTCGGAGTAAATCCTGTGGTGAAGGAAGAGGGAGGGCACCACCGCATGGTCTTGTTGAGAATAGAGTGGCCATAGGGGAAAGCGAAGAGAAAGCGAGGCGCGGGAGGAAAGCTTGGCGTTTCAGATGTGGGGCACTCTGCTTGTTGCTGCCAGGATTTGGTCTTAAGATTGGAAAAGGGAAGGGGGAGAGAAAGGAAGAGGCGGAGGCAGGAGGGTGTATATCCATATCCATATCGAGGAGAGTTTCTTTAGAAAAATTCGAATGCGGTTCATGGGCTTCATCGGGCATGGTGGTTCATGAGGACGGGGAGGCAGGGATGGGGAGCCTTTATTTTGATCTGCCAATGGAATTGATAAGGAACAGTGTGGGTGCTCAGACACAAACACAACCAGTAAAGGCCGCTTTTGTATTCGATAGAGATGGGAACGGGGAGGGAGTTTATCGTCTTCCTGTTTGGACCAAAGGAAAATTGGCGGAGGAATCAAGCTCCCCATCCCCATCTCCATGCATCATTACCCCACGCTTGCGCAAAGCCAGACGAGAGTTCAATGCACTTTTGGAAGCCCACACTCACACTCTATGACTCAATCCCCCCAACTATGTATCACCTTACTTCTCTACAAACCGCAATGGAATATGGCTACGCGCCTTTTTTTTTTTTCCTTCC

mRNA sequence

ATGGCACTTCCACCCTCTGATACATTACGACCTCTATCTGGTGGCACCACTAGCAGAAGCTACGAATTTGTTGGGGATGTGGTTATTGAGTTGTCGACGCAATTGAAGTTGGAAAGCTACAGTGTCCCAAACTCGGCCTATTCATCCCCTCGGTTGGGCAGTGGACTGAGTCGGAGTAAATCCTGTGGTGAAGGAAGAGGGAGGGCACCACCGCATGGTCTTGTTGAGAATAGAGTGGCCATAGGGGAAAGCGAAGAGAAAGCGAGGCGCGGGAGGAAAGCTTGGCGTTTCAGATGTGGGGCACTCTGCTTGTTGCTGCCAGGATTTGGTCTTAAGATTGGAAAAGGGAAGGGGGAGAGAAAGGAAGAGGCGGAGGCAGGAGGGTGTATATCCATATCCATATCGAGGAGAGTTTCTTTAGAAAAATTCGAATGCGGTTCATGGGCTTCATCGGGCATGGTGGTTCATGAGGACGGGGAGGCAGGGATGGGGAGCCTTTATTTTGATCTGCCAATGGAATTGATAAGGAACAGTGTGGGTGCTCAGACACAAACACAACCAGTAAAGGCCGCTTTTGTATTCGATAGAGATGGGAACGGGGAGGGAGTTTATCGTCTTCCTGTTTGGACCAAAGGAAAATTGGCGGAGGAATCAAGCTCCCCATCCCCATCTCCATGCATCATTACCCCACGCTTGCGCAAAGCCAGACGAGAGTTCAATGCACTTTTGGAAGCCCACACTCACACTCTATGACTCAATCCCCCCAACTATGTATCACCTTACTTCTCTACAAACCGCAATGGAATATGGCTACGCGCCTTTTTTTTTTTTCCTTCC

Coding sequence (CDS)

ATGGCACTTCCACCCTCTGATACATTACGACCTCTATCTGGTGGCACCACTAGCAGAAGCTACGAATTTGTTGGGGATGTGGTTATTGAGTTGTCGACGCAATTGAAGTTGGAAAGCTACAGTGTCCCAAACTCGGCCTATTCATCCCCTCGGTTGGGCAGTGGACTGAGTCGGAGTAAATCCTGTGGTGAAGGAAGAGGGAGGGCACCACCGCATGGTCTTGTTGAGAATAGAGTGGCCATAGGGGAAAGCGAAGAGAAAGCGAGGCGCGGGAGGAAAGCTTGGCGTTTCAGATGTGGGGCACTCTGCTTGTTGCTGCCAGGATTTGGTCTTAAGATTGGAAAAGGGAAGGGGGAGAGAAAGGAAGAGGCGGAGGCAGGAGGGTGTATATCCATATCCATATCGAGGAGAGTTTCTTTAGAAAAATTCGAATGCGGTTCATGGGCTTCATCGGGCATGGTGGTTCATGAGGACGGGGAGGCAGGGATGGGGAGCCTTTATTTTGATCTGCCAATGGAATTGATAAGGAACAGTGTGGGTGCTCAGACACAAACACAACCAGTAAAGGCCGCTTTTGTATTCGATAGAGATGGGAACGGGGAGGGAGTTTATCGTCTTCCTGTTTGGACCAAAGGAAAATTGGCGGAGGAATCAAGCTCCCCATCCCCATCTCCATGCATCATTACCCCACGCTTGCGCAAAGCCAGACGAGAGTTCAATGCACTTTTGGAAGCCCACACTCACACTCTATGA

Protein sequence

MALPPSDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRLGSGLSRSKSCGEGRGRAPPHGLVENRVAIGESEEKARRGRKAWRFRCGALCLLLPGFGLKIGKGKGERKEEAEAGGCISISISRRVSLEKFECGSWASSGMVVHEDGEAGMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSPSPSPCIITPRLRKARREFNALLEAHTHTL

Homology

[Close]

BLAST of Lcy04g024360 vs. ExPASy TrEMBL
Match: A0A6J1ILL2 (uncharacterized protein LOC111478548 OS=Cucurbita maxima OX=3661 GN=LOC111478548 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 6.8e-86
Identity = 185/265 (69.81%), Postives = 202/265 (76.23%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRLGS----------- 65
           +D L PLS GTT RSYE V DVVI++STQ KLESYS PNSAYSSP LGS           
Sbjct: 5   ADKLEPLSVGTTGRSYELVEDVVIKVSTQFKLESYSAPNSAYSSPPLGSGAAAKKKVHDG 64

Query: 66  --GLSRSKSCGEGRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFRCGALCLLLP---G 125
             GL+RSKSCGEGRG+A PHGL++NRV I E   K +    KA RFRCGALCLLLP   G
Sbjct: 65  GRGLNRSKSCGEGRGKALPHGLIDNRVMIWEKGHKHKTEEGKARRFRCGALCLLLPLLGG 124

Query: 126 FGLKIGKGKGERKEEA----EAGGCISISISR-RVSLEKFECGSWASSGMVVHEDGEA-- 185
            G K+GKGK ERKEE     E GGCISISIS  RVSLEKFECGSWASSGMV HEDGE+  
Sbjct: 125 LGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKFECGSWASSGMVAHEDGESMT 184

Query: 186 GMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSP 245
           GMGSLYFDLPMELIRNSVGA+TQ+ P +AAFVFDRD  G GV+ LPVWTK KLAEES   
Sbjct: 185 GMGSLYFDLPMELIRNSVGARTQS-PAQAAFVFDRD--GVGVHHLPVWTKAKLAEESG-- 244

Query: 246 SPSPCIITPRLRKARREFNALLEAH 247
           + SPC+ITPRLR+AR EFNALLEAH
Sbjct: 245 AASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of Lcy04g024360 vs. ExPASy TrEMBL
Match: A0A6J1EGQ7 (uncharacterized protein LOC111433224 OS=Cucurbita moschata OX=3662 GN=LOC111433224 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.4e-85
Identity = 184/265 (69.43%), Postives = 200/265 (75.47%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRLGS----------- 65
           +D L PLS GTT R YE V DVVIE+STQ KLESYS PNSAYSSP LGS           
Sbjct: 5   ADKLEPLSVGTTGRRYELVEDVVIEVSTQFKLESYSAPNSAYSSPPLGSGAAAKKKVHDG 64

Query: 66  --GLSRSKSCGEGRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFRCGALCLLLP---G 125
             GL+RSKSCGEGRG+A PHGL+ENRV I E   K +    KA RFRCGALCLLLP   G
Sbjct: 65  GRGLNRSKSCGEGRGKALPHGLIENRVMIWEKGHKHKTEEGKARRFRCGALCLLLPVLGG 124

Query: 126 FGLKIGKGKGERKEEA----EAGGCISISISR-RVSLEKFECGSWASSGMVVHEDGE--A 185
            G K+GKGK ERKEE     E GGCISISIS  RVSLEKFECGSWASSGMV HEDGE  +
Sbjct: 125 LGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKFECGSWASSGMVAHEDGESMS 184

Query: 186 GMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSP 245
           GMGSLYFDLPMELIRNSVGA+TQ+ P + AFVF+RD  G GV+ LPVWTK KLAEES   
Sbjct: 185 GMGSLYFDLPMELIRNSVGARTQS-PAQTAFVFNRD--GVGVHHLPVWTKAKLAEESG-- 244

Query: 246 SPSPCIITPRLRKARREFNALLEAH 247
           + SPC+ITPRLR+AR EFNALLEAH
Sbjct: 245 AASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of Lcy04g024360 vs. ExPASy TrEMBL
Match: A0A0A0KME4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538760 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.1e-75
Identity = 172/252 (68.25%), Postives = 189/252 (75.00%), Query Frame = 0


Query: 11  PLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRLG------SGLSRSKSCGE 70
           PLS GT+SR YEFV DVVIE+S QL     S PNSAYSSPRL        GL+RS+SCGE
Sbjct: 10  PLSVGTSSRRYEFVEDVVIEVSRQL-----SAPNSAYSSPRLAGKKKDRDGLNRSQSCGE 69

Query: 71  GRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFR-CGALCLLLPGFGLKIG----KGKG 130
           GRG+A PHGL+EN+V + E  +K +    K  RFR CGALCLLLP  G K+G    KGK 
Sbjct: 70  GRGKAAPHGLIENKVMVWEKGDKHKTEEGKGRRFRCCGALCLLLPVLGFKVGKGRMKGKE 129

Query: 131 ERKEEAEAGGCISISISRRVSLEKFECGSWASSGMVVHEDGEAGMGSLYFDLPMELIRNS 190
           E++EEAE G CISISISRRVSLEKFECGSWASSGMVVHEDGE+  GSLYFDLPMELIRNS
Sbjct: 130 EKREEAEEGECISISISRRVSLEKFECGSWASSGMVVHEDGES--GSLYFDLPMELIRNS 189

Query: 191 VGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSPSPSPCIITPRLRKARRE 250
           V AQTQ+ PV AAFVF    NG G     VW K KLAEES   + SPCIITPRLRKAR+E
Sbjct: 190 VSAQTQS-PVGAAFVF----NGRG-----VWNKPKLAEESG--AASPCIITPRLRKARQE 242

[Close]

BLAST of Lcy04g024360 vs. ExPASy TrEMBL
Match: A0A1S3AZD3 (uncharacterized protein LOC103484232 OS=Cucumis melo OX=3656 GN=LOC103484232 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 6.2e-71
Identity = 162/253 (64.03%), Postives = 185/253 (73.12%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRL------GSGLSRS 65
           SD + PLS   +SR YEFV DVV+ +S QL     S PNS YSSPRL        GL+RS
Sbjct: 7   SDGIVPLSVVPSSRRYEFVEDVVVGVSRQL-----SAPNSGYSSPRLIGKKKVRDGLNRS 66

Query: 66  KSCGEGRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFRCGALCLLLPGFGLKIG---- 125
           KSCG+GRG+A PHGL+EN++   E  +K +    K  RF+CGALCLLLP  G K+G    
Sbjct: 67  KSCGDGRGKAAPHGLIENKIMAWEGGDKHKTEEGKGRRFKCGALCLLLPVLGFKVGKGRM 126

Query: 126 KGKGERKEEAEAGGCISISISRRVSLEKFECGSWASSGMVVHEDGEAGMGSLYFDLPMEL 185
           KGK E+KEEAE G CISISISRRVSL+KFECGSWASSGMVVHE+GE+  GSLYFDLPMEL
Sbjct: 127 KGKEEKKEEAEEGECISISISRRVSLQKFECGSWASSGMVVHEEGES--GSLYFDLPMEL 186

Query: 186 IRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSPSPSPCIITPRLRK 245
           IRNSV AQ+Q+ PV AAFVFD     EG     VW K KLA+ES   + SPCIITPRLRK
Sbjct: 187 IRNSVSAQSQS-PVGAAFVFD---GKEG-----VWNKPKLADESG--AASPCIITPRLRK 241

Query: 246 ARREFNALLEAHT 248
           AR+EFNALLEAHT
Sbjct: 247 ARQEFNALLEAHT 241

[Close]

BLAST of Lcy04g024360 vs. ExPASy TrEMBL
Match: A0A5A7UFW0 (Ycf3-interacting protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00060 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.1e-70
Identity = 163/253 (64.43%), Postives = 185/253 (73.12%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRL------GSGLSRS 65
           SD + PLS   +SR YEFV DVV+ +S QL     S PNS YSSPRL        GL+RS
Sbjct: 246 SDGIVPLSVVPSSRRYEFVEDVVVGVSRQL-----SAPNSGYSSPRLIGKKKVRDGLNRS 305

Query: 66  KSCGEGRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFRCGALCLLLPGFGLKIG---- 125
           KSCG+GRG+A PHGL+EN++   E  +K +    K  RF+CGALCLLLP  G K+G    
Sbjct: 306 KSCGDGRGKAAPHGLIENKIMAWEGGDKHKTEEGKGRRFKCGALCLLLPVLGFKVGKGRM 365

Query: 126 KGKGERKEEAEAGGCISISISRRVSLEKFECGSWASSGMVVHEDGEAGMGSLYFDLPMEL 185
           KGK E+KEEAE G CISISISRRVSLEKFECGSWASSGMVVHE+GE+  GSLYFDLPMEL
Sbjct: 366 KGKEEKKEEAEEGECISISISRRVSLEKFECGSWASSGMVVHEEGES--GSLYFDLPMEL 425

Query: 186 IRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSPSPSPCIITPRLRK 245
           IRNSV AQ+Q+ PV AAFVFD    G+GV   P     KLAEES   + SPCIITPRLRK
Sbjct: 426 IRNSVSAQSQS-PVGAAFVFD----GKGVRNKP-----KLAEESG--AASPCIITPRLRK 479

Query: 246 ARREFNALLEAHT 248
           AR+EFNALLEAHT
Sbjct: 486 ARQEFNALLEAHT 479

[Close]

BLAST of Lcy04g024360 vs. NCBI nr
Match: XP_023543164.1 (uncharacterized protein LOC111803119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.4 bits (838), Expect = 1.1e-85
Identity = 186/265 (70.19%), Postives = 200/265 (75.47%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRLGS----------- 65
           +D L PLS GTT R YE V DVVIE+STQ KLESYS PNSAYSSP LGS           
Sbjct: 5   ADKLEPLSVGTTGRRYELVEDVVIEVSTQFKLESYSAPNSAYSSPPLGSGAAAKKKVHDG 64

Query: 66  --GLSRSKSCGEGRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFRCGALCLLLP---G 125
             GL+RSKSCGEGRGRA PHGL+ENRV I E   K +    KA RFRCGALCLLLP   G
Sbjct: 65  GRGLNRSKSCGEGRGRALPHGLIENRVMIWEKGHKHKTEEGKARRFRCGALCLLLPVLGG 124

Query: 126 FGLKIGKGKGERKEEA----EAGGCISISISR-RVSLEKFECGSWASSGMVVHEDGE--A 185
            G K+GKGK ERKEE     E GGCISISIS  RVSLEKFECGSWASSGMV HEDGE  +
Sbjct: 125 LGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKFECGSWASSGMVAHEDGESMS 184

Query: 186 GMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSP 245
           GMGSLYFDLPMELIRNSVGA+TQ+ P + AFVFDRD  G GV+ LPVWTK KLAEES   
Sbjct: 185 GMGSLYFDLPMELIRNSVGARTQS-PAQTAFVFDRD--GVGVHHLPVWTKAKLAEESG-- 244

Query: 246 SPSPCIITPRLRKARREFNALLEAH 247
           + SPC+ITPRLR+AR EFNALLEAH
Sbjct: 245 AASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of Lcy04g024360 vs. NCBI nr
Match: XP_038877520.1 (uncharacterized protein LOC120069777 [Benincasa hispida])

HSP 1 Score: 327.0 bits (837), Expect = 1.4e-85
Identity = 183/258 (70.93%), Postives = 198/258 (76.74%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRL---------GSGL 65
           +DT+ PLS GTTSRSYEFV DVVIE+STQLKL SYSVPNSAYSSPRL         G GL
Sbjct: 5   ADTIVPLSVGTTSRSYEFVDDVVIEVSTQLKLGSYSVPNSAYSSPRLAAKKKVHDSGRGL 64

Query: 66  SRSKSCGEGRGRAPPHGLVENRVAIGESEEKARRGRKAWRFRCGALCLLLP---GFGLKI 125
           +RSKSCGEGRG+A PH L+EN+V + E   K +   KA RFRCGALCLLLP   G G K+
Sbjct: 65  NRSKSCGEGRGKAVPHNLIENKVMVWEKGHKHKTEGKAKRFRCGALCLLLPVLGGLGFKV 124

Query: 126 G----KGKGERKEEAEAGGCISISISRRVSLEKFECGSWASSGMVVHEDGEAGMGSLYFD 185
           G    KGK ERKEEAE G CISISISRRVSLEKFECGSWASSGMVVHEDGE  +GS YFD
Sbjct: 125 GKGKEKGKEERKEEAEEGECISISISRRVSLEKFECGSWASSGMVVHEDGE--LGSRYFD 184

Query: 186 LPMELIRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSPSPSPCIIT 245
           LPMELIRNSVG QTQ+ PV AAFVFD        + LP+WTK  LAEES   + SPCIIT
Sbjct: 185 LPMELIRNSVGVQTQS-PVGAAFVFDH-------HHLPIWTKPNLAEESG--AASPCIIT 244

Query: 246 PRLRKARREFNALLEAHT 248
           PRLRKAR EFNALLEAHT
Sbjct: 245 PRLRKAREEFNALLEAHT 250

[Close]

BLAST of Lcy04g024360 vs. NCBI nr
Match: XP_022978627.1 (uncharacterized protein LOC111478548 [Cucurbita maxima])

HSP 1 Score: 327.0 bits (837), Expect = 1.4e-85
Identity = 185/265 (69.81%), Postives = 202/265 (76.23%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRLGS----------- 65
           +D L PLS GTT RSYE V DVVI++STQ KLESYS PNSAYSSP LGS           
Sbjct: 5   ADKLEPLSVGTTGRSYELVEDVVIKVSTQFKLESYSAPNSAYSSPPLGSGAAAKKKVHDG 64

Query: 66  --GLSRSKSCGEGRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFRCGALCLLLP---G 125
             GL+RSKSCGEGRG+A PHGL++NRV I E   K +    KA RFRCGALCLLLP   G
Sbjct: 65  GRGLNRSKSCGEGRGKALPHGLIDNRVMIWEKGHKHKTEEGKARRFRCGALCLLLPLLGG 124

Query: 126 FGLKIGKGKGERKEEA----EAGGCISISISR-RVSLEKFECGSWASSGMVVHEDGEA-- 185
            G K+GKGK ERKEE     E GGCISISIS  RVSLEKFECGSWASSGMV HEDGE+  
Sbjct: 125 LGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKFECGSWASSGMVAHEDGESMT 184

Query: 186 GMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSP 245
           GMGSLYFDLPMELIRNSVGA+TQ+ P +AAFVFDRD  G GV+ LPVWTK KLAEES   
Sbjct: 185 GMGSLYFDLPMELIRNSVGARTQS-PAQAAFVFDRD--GVGVHHLPVWTKAKLAEESG-- 244

Query: 246 SPSPCIITPRLRKARREFNALLEAH 247
           + SPC+ITPRLR+AR EFNALLEAH
Sbjct: 245 AASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of Lcy04g024360 vs. NCBI nr
Match: XP_022925963.1 (uncharacterized protein LOC111433224 [Cucurbita moschata] >KAG6581534.1 hypothetical protein SDJN03_21536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324.3 bits (830), Expect = 9.1e-85
Identity = 184/265 (69.43%), Postives = 200/265 (75.47%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRLGS----------- 65
           +D L PLS GTT R YE V DVVIE+STQ KLESYS PNSAYSSP LGS           
Sbjct: 5   ADKLEPLSVGTTGRRYELVEDVVIEVSTQFKLESYSAPNSAYSSPPLGSGAAAKKKVHDG 64

Query: 66  --GLSRSKSCGEGRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFRCGALCLLLP---G 125
             GL+RSKSCGEGRG+A PHGL+ENRV I E   K +    KA RFRCGALCLLLP   G
Sbjct: 65  GRGLNRSKSCGEGRGKALPHGLIENRVMIWEKGHKHKTEEGKARRFRCGALCLLLPVLGG 124

Query: 126 FGLKIGKGKGERKEEA----EAGGCISISISR-RVSLEKFECGSWASSGMVVHEDGE--A 185
            G K+GKGK ERKEE     E GGCISISIS  RVSLEKFECGSWASSGMV HEDGE  +
Sbjct: 125 LGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKFECGSWASSGMVAHEDGESMS 184

Query: 186 GMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSP 245
           GMGSLYFDLPMELIRNSVGA+TQ+ P + AFVF+RD  G GV+ LPVWTK KLAEES   
Sbjct: 185 GMGSLYFDLPMELIRNSVGARTQS-PAQTAFVFNRD--GVGVHHLPVWTKAKLAEESG-- 244

Query: 246 SPSPCIITPRLRKARREFNALLEAH 247
           + SPC+ITPRLR+AR EFNALLEAH
Sbjct: 245 AASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of Lcy04g024360 vs. NCBI nr
Match: KAG7034827.1 (hypothetical protein SDJN02_04559, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324.3 bits (830), Expect = 9.1e-85
Identity = 184/265 (69.43%), Postives = 200/265 (75.47%), Query Frame = 0


Query: 6   SDTLRPLSGGTTSRSYEFVGDVVIELSTQLKLESYSVPNSAYSSPRLGS----------- 65
           +D L PLS GTT R YE V DVVIE+STQ KLESYS PNSAYSSP LGS           
Sbjct: 268 ADKLEPLSVGTTGRRYELVEDVVIEVSTQFKLESYSAPNSAYSSPPLGSGAAAKKKVHDG 327

Query: 66  --GLSRSKSCGEGRGRAPPHGLVENRVAIGESEEKARRGR-KAWRFRCGALCLLLP---G 125
             GL+RSKSCGEGRG+A PHGL+ENRV I E   K +    KA RFRCGALCLLLP   G
Sbjct: 328 GRGLNRSKSCGEGRGKALPHGLIENRVMIWEKGHKHKTEEGKARRFRCGALCLLLPVLGG 387

Query: 126 FGLKIGKGKGERKEEA----EAGGCISISISR-RVSLEKFECGSWASSGMVVHEDGE--A 185
            G K+GKGK ERKEE     E GGCISISIS  RVSLEKFECGSWASSGMV HEDGE  +
Sbjct: 388 LGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKFECGSWASSGMVAHEDGESMS 447

Query: 186 GMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRDGNGEGVYRLPVWTKGKLAEESSSP 245
           GMGSLYFDLPMELIRNSVGA+TQ+ P + AFVF+RD  G GV+ LPVWTK KLAEES   
Sbjct: 448 GMGSLYFDLPMELIRNSVGARTQS-PAQTAFVFNRD--GVGVHHLPVWTKAKLAEESG-- 507

Query: 246 SPSPCIITPRLRKARREFNALLEAH 247
           + SPC+ITPRLR+AR EFNALLEAH
Sbjct: 508 AASPCVITPRLRRAREEFNALLEAH 527

[Close]

BLAST of Lcy04g024360 vs. TAIR 10
Match: AT4G20190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44660.1); Has 271 Blast hits to 209 proteins in 52 species: Archae - 0; Bacteria - 15; Metazoa - 63; Fungi - 14; Plants - 48; Viruses - 3; Other Eukaryotes - 128 (source: NCBI BLink). )

HSP 1 Score: 95.5 bits (236), Expect = 6.4e-20
Identity = 67/183 (36.61%), Postives = 89/183 (48.63%), Query Frame = 0


Query: 97  FRCGALCLLLPGFGLKIGKGK---GERKEEAEAGGCISIS----------------ISRR 156
           F+C ALCL LPGF     KGK     RK ++      +++                +S R
Sbjct: 210 FKCSALCLYLPGF----SKGKPVRSSRKGDSSFTRTTTMTSSQSMARTASIRDTAVLSAR 269

Query: 157 VSLEKFECGSWASSGMVVHEDGEAGMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRD 216
            SLE+FECGSW SS M+   D  A +G  +FDLP ELI+   G   Q  PV AAFVFD++
Sbjct: 270 ASLERFECGSWTSSAMIY--DDNADLGGHFFDLPSELIKGGPGGNDQDDPVSAAFVFDKE 329

Query: 217 GNGEGVYRLPVWTKGKLAEES-----------SSPSPSPC----IITPRLRKARREFNAL 246
            N +   +  + T G  +  S           SSP   P      ITPRL +A  +F++ 
Sbjct: 330 PNLDKEIKGVLKTSGSKSRRSMESPRHVRFSTSSPVSYPTSPTHSITPRLLQATEDFSSF 386

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BLAST of Lcy04g024360 vs. TAIR 10
Match: AT1G30850.1 (root hair specific 4 )

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-18
Identity = 62/180 (34.44%), Postives = 84/180 (46.67%), Query Frame = 0


Query: 97  FRCGALCLLLPGFGL-KIGKGKGERKEEAE-----AGGCISISISRRVSLEKFECGSWAS 156
           F+C A CL LPGFG  K+ +   +R+   E     A      ++S R SLEKFECGSWAS
Sbjct: 124 FKCNAFCLSLPGFGKNKLIRSSSKRQNSMEKKMIRASSFTGSTVSVRASLEKFECGSWAS 183

Query: 157 SGMVVHEDGEAGMGSLYFDLPMELI----RNSVGAQTQTQPVKAAFVFDRD--------- 216
           +  ++ ++G      L+FD P+E+     R   G +   +PV + F+FDR+         
Sbjct: 184 TTALIQDNGR-----LFFDFPVEMTKCNSRGGNGGRDVQEPVTSGFLFDRETETLALRSV 243

Query: 217 ------------GNGEGVYRLPVWTKGKLAEESSSPSPSPCIITPRLRKARREFNALLEA 246
                              R+   T    A  S   SP  C ITPRLRKAR +FN  L A
Sbjct: 244 LKTRSTRDHRRSAESSPQRRVRFSTSSSSASVSCPTSPRTC-ITPRLRKARDDFNTFLTA 297

[Close]

BLAST of Lcy04g024360 vs. TAIR 10
Match: AT5G44660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits to 462 proteins in 141 species: Archae - 2; Bacteria - 370; Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other Eukaryotes - 239 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-18
Identity = 88/270 (32.59%), Postives = 119/270 (44.07%), Query Frame = 0


Query: 38  ESYSVPNSAYSSPRLGSGL----------------SRSKSCGE-GRGRAPPHGLVENRVA 97
           E  S+PNS   SP+  SGL                 RSKSCG   +  +     + N   
Sbjct: 162 EQDSLPNSTTGSPKQRSGLMRALRNKEQDSSSASYKRSKSCGSTSKTLSHKSSGIRNSFF 221

Query: 98  IGESEEKARRGRKAW--RFRCGALCLLLPGFGLKIGKGKGERKEEAE------------- 157
           I     K+         RF+C ALCL LPGF     KGK  R  + +             
Sbjct: 222 IKTDSNKSISNNSTLEDRFKCNALCLFLPGF----SKGKPIRSSQKDDSSSFTRTTTMTR 281

Query: 158 -AGGCISIS--------------ISRRVSLEKFECGSWASSGMVVHEDGEAGMGSLYFDL 217
            +   I++S              IS R S+EKF+CGS+ S        GE G G+ +FDL
Sbjct: 282 SSSSTITVSRTVSVRESTTTTTVISARASMEKFDCGSYTSESC-----GEEG-GNHFFDL 341

Query: 218 PMELIRNSVGAQTQTQPVKAAFVFDR---DGNGEGVYRLPVWTKGKLAEES--------- 246
           P ELI++  G     +PV AAFVFD+   +   +GV ++   +K + A ES         
Sbjct: 342 PSELIKSGSGDNDHDEPVSAAFVFDKEPVEKEIKGVLKVS-GSKNRKAMESPSLRQVRFS 401

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BLAST of Lcy04g024360 vs. TAIR 10
Match: AT2G34910.1 (BEST Arabidopsis thaliana protein match is: root hair specific 4 (TAIR:AT1G30850.1); Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 5.1e-17
Identity = 62/173 (35.84%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 97  FRCGALCLLLPGFGLK-IGKGKGE---RKEEAEAGGCISISISRRVSLEKFECGSWASSG 156
           F+C A CL LPGFG + +   K E   +K+  +A    + ++S   SLEKFECGSWAS+ 
Sbjct: 120 FKCNAFCLSLPGFGKRPVRSPKSEDSIKKKMIKASSFSNSTVSLSASLEKFECGSWASTT 179

Query: 157 MVVHEDGEAGMGSLYFDLPMELIRNSVGAQTQTQPVKAAFVFDRDGNG---EGVYRLPVW 216
            +  E+G      LY DLP+E+I+   G     +PV + F FD++        V +    
Sbjct: 180 ALTRENGR-----LYIDLPVEMIK--CGGGDVQEPVSSGFFFDKETGSLALRSVLKKSSS 239

Query: 217 TKGK----LAEES-------------SSPSPSPCIITPRLRKARREFNALLEA 246
             G+    LAE S             S P+     ITPRL KAR +FN  L A
Sbjct: 240 LSGRQLRDLAETSPQRRVRFSTTTSDSCPASPRTCITPRLLKARDDFNTFLAA 285

The following BLAST results are available for this feature:

BLAST of Lcy04g024360 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g024360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILL2	6.8e-86	69.81	uncharacterized protein LOC111478548 OS=Cucurbita maxima OX=3661 GN=LOC111478548...	[more]
A0A6J1EGQ7	4.4e-85	69.43	uncharacterized protein LOC111433224 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A0A0KME4	1.1e-75	68.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538760 PE=4 SV=1	[more]
A0A1S3AZD3	6.2e-71	64.03	uncharacterized protein LOC103484232 OS=Cucumis melo OX=3656 GN=LOC103484232 PE=...	[more]
A0A5A7UFW0	1.1e-70	64.43	Ycf3-interacting protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]

BLAST of Lcy04g024360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543164.1	1.1e-85	70.19	uncharacterized protein LOC111803119 [Cucurbita pepo subsp. pepo]	[more]
XP_038877520.1	1.4e-85	70.93	uncharacterized protein LOC120069777 [Benincasa hispida]	[more]
XP_022978627.1	1.4e-85	69.81	uncharacterized protein LOC111478548 [Cucurbita maxima]	[more]
XP_022925963.1	9.1e-85	69.43	uncharacterized protein LOC111433224 [Cucurbita moschata] >KAG6581534.1 hypothet...	[more]
KAG7034827.1	9.1e-85	69.43	hypothetical protein SDJN02_04559, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lcy04g024360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20190.1	6.4e-20	36.61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G30850.1	2.1e-18	34.44	root hair specific 4	[more]
AT5G44660.1	2.1e-18	32.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G34910.1	5.1e-17	35.84	BEST Arabidopsis thaliana protein match is: root hair specific 4 (TAIR:AT1G30850...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..71
None	No IPR available	PANTHER	PTHR33672:SF2	OS07G0499850 PROTEIN	coord: 56..247
IPR040340	Chloroplast enhancing stress tolerance protein	PANTHER	PTHR33672	YCF3-INTERACTING PROTEIN 1, CHLOROPLASTIC	coord: 56..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g024360.1	Lcy04g024360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
biological_process	GO:0080183	response to photooxidative stress
cellular_component	GO:0009535	chloroplast thylakoid membrane