Lcy04g023480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g023480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA-damage-repair/toleration protein DRT111, chloroplastic-like
Location	Chr04: 54616577 .. 54622500 (+)
RNA-Seq Expression	Lcy04g023480
Synteny	Lcy04g023480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATCCCTCTTTCTACTTCATTACTGTCACTCAAATCCCTAATTCCGAGTACTCCCAAATTTTGCCAATTTTGCCGACCAGTGTCAACTGTAAACTCCCTTCTCCGATTCTGCTTCCATTTTGAAATTCCTGGCGTTTCAGAGATTCCAAGGAGAGAAGACATAGTCACGCGTACGATATGCTCGGTGGATTGTACGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCTAGCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCATCGTCCGTCTTCGCGCCGCAGACTGTTCTTAGATCTCAAAGCAAAGTAAAAGCAGCCACATCGACGCTTCCGAAGGCTTTGGTGTCAGCGCCGGTGGAGCCGTCTCAGCCGATTCTGGCCGAGGCCATCACGCAACCGGCATTGGTGGCTGTTACGTCGACTGTTATAGAAGAGTACGATCCAGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGAAAGGCCATGGAGGCTGAGATGAGGAAGGAGCTCGAGAGGCGGAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGATCGAGAAAGAGAATATTCTGATTCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCACCACCAAGCAGCGCAGACGGCTTCAGCATTGGAAAATCGGAGACTGGCGGCTTGGGAGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGAATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTCGGGAAGCAGGAACAAGGGATTACCACCCCTCTGATGGCAAAAAAGACAGACTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGGCTACCTACTCGGGTTCTTCTGCTCAGAAACATGGTACGGTATTGTAGAATCCTGACATTTCTGTCGACTTGAAATGAATCTTAAGTGGCAGGTTTGTTTTCGAGGCATTAGAATTTCAGTAGTTCTTTCTCATTGCTCTCTTTACTATTAAAATATTTAGAAATTTCAGTTAGATTGGAGCAATCTAGACAGTCTTACGGTAACCGATCATATCGTATTTTCATCCTTTAAGCAGTTTGTAGATAGTTGCAAACACCCTTATTAGCTCAGGATTCTTCTTTTAATCCATCATTAAAATGCATGCACTTGAGAAAAATCTTGGTTGTCTATAATTTGATGAAAGTTCGATTCCTAACCTTGGTATCCTTAAGTGCTTGCCAATTGATATACGCTTATTTAGTTGCAATGTTAGACCACTACGGTGAATGGATTGTTAGTTAGGCAGAAAGGTTATTGTCAGCCGCCAGCTAGCATTCTTATCAGTAATCAGCCAATTTCTCAAGCAGATCTTTATAAATTTCACCTTCACTTACGAGTATAAAGGAATAAGATATGGACTAAATAATCCATAGTTGCATATAGAGTTCTCGTGTGGAAAGTGGTGGAGGGAAAAACAATAAATTACTAGTCCATTTGAAAATCAATTAAAAAGCAGATAAACTACGAAAACTTAATCAAGACTTGCCACCTTTACTCATCTGGGTCTGTATATAAGCCTGGATCAATCTTAGATATTTTACTAGATCATTTCAGGTTTGAAGTTTATTGTTATACCAATATTCTATTTTGCCTTGAGAAAAGAGTCGCATGTCGAGAGATTAGAAATCTAGGGGGGAAAAAGGATAGGTCAATATAACACATTCTATGGGTTGTACGAACATCAAGATATACCACATTTGGTTGAACTCTCATGTTGTAATTTGATTCTTTGTCGCATTAGGTTGTACAAATTCCCCCCCCCCCCCCCTCCTAATATGTATCTTTGGATACCCTTCAAAGATAGAGATTCTAATGTTATGGCTTCCCTCCTAGGTATTATCTAGGGCGTGAGGTTTTAGGGACCATATGCTCTGCTTCCTAGAGCCTTTTGGTTTCTTTTCTTGTAATTCTTTTTTGCATCATTTACTTGCAACATTCCAAGGTCTCCTCTCTTTTTTGTACCAAGTTTTTGAAGGTCAACATCTTTAAGAGGTTGTCTATCCATCAAAAAAAAAAAAAAGAGGTTTAAGGGTTGTCTCTTTGCTCGTCTGTTTTGGTTTGGCCCATGTTATGTCTTGTATGCACGAAGGCATTGGAGGATCTATGTCATATTCTTTGAAGATATTCCTTTTTGAGTATTTATCGTCTAGTTTCTTTCAGGTTTTTCACTCTTTTCACTCCCATATACTTGAACCTTGTTTTTTCTTTTCATTTATCGATGAAAAATGAGTTTCTTGTTAAAAGAAGTTTATGTGGTTAGGATGGAGGAGGTCCTTTGTGTCCTTTATTTAAACAGAAGGAAAGTTCTTTGGTGGGCTCTCTCTCTCTCTCTGGTGTCCTTTGGAGTTTATGGTTTGAGAAGAAAAGGAGGATTTTTAGAGTGTCAAAGGGTTCTTGGGGGGAGGTTTGGAACATTACAGAGTCTGTAAAAGGTGATCACCGAAGGGGAGAAAATCGAAAATTTCCTGTGGGGAAAGTAATTGAGAAATGCTTAGTTGTTTAGCCAACTGGAATATTGCTACATGGCCCCTAGAAGATAGAGGCTTAGAATTAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCTTTTTGTTGGAAAAGAAACAATTTCATGGATAGAATTAAGCAATTTAAGGAAGAGAAGTGAGGCAATGTTAGTACTAGTGAGAGGCTGTGGAGATATCCTAGAGAAAGTTATGAGACATGCTGTAAGCTGATTACTTTACTAGAAAATATGGAAATGAAGAAGGGAAGGAAGAAAATAGGCAGTTTACTCAAGCAAGGCGATTTGGTTGTTTTCAAATCCCTTTTGTGGCCACCCTATCAAATTCTGAGCAAAAAAGCTGGGCATCGAAGAGAGAACTTCTTTCTAGATAGGAAATTGCTGGTTATGTCATGGCTTTCCTCAGGTTTCATTGGTTCTTTCTGGTTATATCCCAAACCAAGGTTTTCAGCAAGAAGAAATCTAGCCGAGGAGGAGGCATACAAGAGTTCTGATTCAAATTCTAGATGATATACAACCTTGTGGCATGGAGGATAAATGGATTTGGGGAATAAATCCTTCAGTCTAATTGTTTGTAAAATTACTGCTAAAAGAGCTCATTGGATTGCAGCCAGGAAGAAGAAGGCAAAAATCTTTTGGTTTAATGTTGTCAAGCCATTGTTTAGGGATTATGAACTCAAAGAAATCAAAGATTATTAGGAGAAAAACATGCAAGTTCAGAAGAAATAAGGTTTAGGGTTTAGAGTTTGGATTGGATTTATCAGACTAGCACAATTCTTGTTCTAATTATGGTCCCCCACTGTAATTATAAAAAAAATGGGGTTTTCCCCATCCTTTTTGTTCTTTTTGGGGACAATTTCCCATTTGGAGTATTTTATAATCTCAATGTAACTTTGCACCAAGTCAATGGAAAGCCTTCAGGCAGGGTTGAAGAACAGGGTGTTTCACTGGATTAGTTGGCGAAGCAGGGTTTGAGAGTTCCTTGTAGATTGGGGAAATGAAAATTTTCTTTTACCTGAATGGTTTTCTACTTGCACACTTTCTTCAATTGCCTCGTTCCTCAGTTTTGCTCATTAGCTTGTTTGTAATGATAAAAGCAACTATATTGGCAAGATTTTTTTTAGGGATTAGTGGACAAGCGTGTAATTTGGTTTGTAACTATTATTTAATGTTTTGGGTGCGGATTATGATATTATAGGGGCTTTAATGAAGTTTGTTGGTAGGAAGTTACTAGGTACTACTGCTAGAGTATAAGTCGATTTCAAAATTTTCAGAAGCTGTTAATTTCTTGTAAACCTCCATTTTGGCTATGAGTGACATGTACCGTATTGATTTCATCATTTCATTTTTGATTGAAGAGGTTATTTGAACAGTAAACACATTATGTGATAATATTTACATGTGAGAGAGACTGCTGTTTGTAAATAGTACGTGGAATTTCATGAAGAATCTATGGCGGAGCTTGTAATATAGAAGAAAAAACAATACATATTTCAGATTTTTACTTAATTTAAGAATTGTGTTTTACACGCTTGAACCTCTCCCTCCACTTCCTCTATCCTAGTGACTACTTCATACAGATGTGAAAATCTAGGTTATGTTTTAATGTCATTAAACAAACTAGATGACAATTATTATTATTATTATTATATATATAGTTAAAAAAAAGAAGGAAAAAAAAAGAGATTATATATAGTGGGTTGATCTTCTAATCTTTCATTTATGCTTGGGATGGTTTTGAGCTTTAGTATTTTCTACTGTTTAATTGTGTAATGGAATTTGCACCTGTAAGTGCTTGTATTATGAGGTTAGTTAGACGAGGTAGTTGGGAGGTATAACAGTGCAAATAAGCTGATGAGTGAGAGAAAAGGAGGGAGAGCAGACCTCTCAAATACCTGCACTTGTATAGAACTTATTTAAATAGGAGAAAGAGCTTTTGACCATAAACAAGAACTTTCCATTAAAGAAAGATGAAATACCTGCACTTGTATGGATTGGAAAGCTCTTGTTGTGTAGTTTGTTTTTGGGAGGGTTCTCTCTACCCCGGCCCTTAGGTTGTCTTCCCTTTTTTGTTGGAATGATATCCTTTTGTCGTTTCTTATCAAAAAAAAAAAAAAAAAAAAATCAATTTATTGGGTTATTTCCCGTTAAACTCACATCACACGTGAGTATAGCATGCTATGTTTATATATAAGGCCGTGAACAATTTTATCCTCAAGAATATCTAAATAATCAAGCATTTTGATGATTGAAGCATTTTTATAGTATAGATAGCATTACATTTTTCTCCAGACGTCAAAAGCATCTAATTTGTGATCTTTCCCAGATGAAAATGATGAGAATGGCTGTCTTGTTTGATTTTTCTTGAAGGTGGGCCCCGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGAACAGTGACACGGGTTCTGATATTTGAGATCACAGAACCCAATTTTCCAGTGGATGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACAACAAAGGCTTTGGTTGATCTTGATGGTCGGTACTTCGGTGGAAGGGTGGTTCGAGCTACATTTTATGATGAGGAAAGGTTCAGTAAGAATGAATTAGCACCAATGCCAGGAGAAGTCCCTGGATTTACATGAAATCCAAGAAGAAGAAAAAAAACGCCAGACATGCTCACTCTGGGGTGATGAAGCTATGATTAATTTGGATTGGATTGTGCAATAACTTTCCTGTTGTAAAGAGATTTGCCCATGATGTTGTTGACTGAATGAAGCCCAAGAATGGAATTGTTGAAATGATCTTATTAGCTAGCTAGTGCAGATTGTTCTAATCAAATAGTTGCGACAAGATATTTACCTGCTCTTGTTGATTGAACAGAAGGTTCTAATTTCGCTGGCAGATGGTAAAAAAACTGGCTTTCTTTGCAGTCGTTATGAGAATCTCTTTTTTCTTGGGACTGGACTGAATGATGATGCACGTTGTAAGGGACATAACCATCCAAGATAAACCTTTGACGAGTTCATTTTTGTTGACAAATTCTGTTATAGGAAAATTTTCTTGTATTCACGTGTCTGTTTGTTAATAAGAGCTTGGCAATTTATCTTATTTGCTTCCTCGCAGCTTCGATGATTTCTTGAACAATAGTTTCTACCAAGATTGTAATTCGATTTGATTGATACAATGAGACTAACGAC

mRNA sequence

AAAAATCCCTCTTTCTACTTCATTACTGTCACTCAAATCCCTAATTCCGAGTACTCCCAAATTTTGCCAATTTTGCCGACCAGTGTCAACTGTAAACTCCCTTCTCCGATTCTGCTTCCATTTTGAAATTCCTGGCGTTTCAGAGATTCCAAGGAGAGAAGACATAGTCACGCGTACGATATGCTCGGTGGATTGTACGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCTAGCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCATCGTCCGTCTTCGCGCCGCAGACTGTTCTTAGATCTCAAAGCAAAGTAAAAGCAGCCACATCGACGCTTCCGAAGGCTTTGGTGTCAGCGCCGGTGGAGCCGTCTCAGCCGATTCTGGCCGAGGCCATCACGCAACCGGCATTGGTGGCTGTTACGTCGACTGTTATAGAAGAGTACGATCCAGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGAAAGGCCATGGAGGCTGAGATGAGGAAGGAGCTCGAGAGGCGGAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGATCGAGAAAGAGAATATTCTGATTCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCACCACCAAGCAGCGCAGACGGCTTCAGCATTGGAAAATCGGAGACTGGCGGCTTGGGAGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGAATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTCGGGAAGCAGGAACAAGGGATTACCACCCCTCTGATGGCAAAAAAGACAGACTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGGCTACCTACTCGGGTTCTTCTGCTCAGAAACATGGTGGGCCCCGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGAACAGTGACACGGGTTCTGATATTTGAGATCACAGAACCCAATTTTCCAGTGGATGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACAACAAAGGCTTTGGTTGATCTTGATGGTCGGTACTTCGGTGGAAGGGTGGTTCGAGCTACATTTTATGATGAGGAAAGGTTCAGTAAGAATGAATTAGCACCAATGCCAGGAGAAGTCCCTGGATTTACATGAAATCCAAGAAGAAGAAAAAAAACGCCAGACATGCTCACTCTGGGGTGATGAAGCTATGATTAATTTGGATTGGATTGTGCAATAACTTTCCTGTTGTAAAGAGATTTGCCCATGATGTTGTTGACTGAATGAAGCCCAAGAATGGAATTGTTGAAATGATCTTATTAGCTAGCTAGTGCAGATTGTTCTAATCAAATAGTTGCGACAAGATATTTACCTGCTCTTGTTGATTGAACAGAAGGTTCTAATTTCGCTGGCAGATGGTAAAAAAACTGGCTTTCTTTGCAGTCGTTATGAGAATCTCTTTTTTCTTGGGACTGGACTGAATGATGATGCACGTTGTAAGGGACATAACCATCCAAGATAAACCTTTGACGAGTTCATTTTTGTTGACAAATTCTGTTATAGGAAAATTTTCTTGTATTCACGTGTCTGTTTGTTAATAAGAGCTTGGCAATTTATCTTATTTGCTTCCTCGCAGCTTCGATGATTTCTTGAACAATAGTTTCTACCAAGATTGTAATTCGATTTGATTGATACAATGAGACTAACGAC

Coding sequence (CDS)

ATGCTCGGTGGATTGTACGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCTAGCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCATCGTCCGTCTTCGCGCCGCAGACTGTTCTTAGATCTCAAAGCAAAGTAAAAGCAGCCACATCGACGCTTCCGAAGGCTTTGGTGTCAGCGCCGGTGGAGCCGTCTCAGCCGATTCTGGCCGAGGCCATCACGCAACCGGCATTGGTGGCTGTTACGTCGACTGTTATAGAAGAGTACGATCCAGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGAAAGGCCATGGAGGCTGAGATGAGGAAGGAGCTCGAGAGGCGGAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGATCGAGAAAGAGAATATTCTGATTCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCACCACCAAGCAGCGCAGACGGCTTCAGCATTGGAAAATCGGAGACTGGCGGCTTGGGAGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGAATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTCGGGAAGCAGGAACAAGGGATTACCACCCCTCTGATGGCAAAAAAGACAGACTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGGCTACCTACTCGGGTTCTTCTGCTCAGAAACATGGTGGGCCCCGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGAACAGTGACACGGGTTCTGATATTTGAGATCACAGAACCCAATTTTCCAGTGGATGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACAACAAAGGCTTTGGTTGATCTTGATGGTCGGTACTTCGGTGGAAGGGTGGTTCGAGCTACATTTTATGATGAGGAAAGGTTCAGTAAGAATGAATTAGCACCAATGCCAGGAGAAGTCCCTGGATTTACATGA

Protein sequence

MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAATSTLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAMEAEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPSSADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

Homology

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BLAST of Lcy04g023480 vs. ExPASy Swiss-Prot
Match: P42698 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT111 PE=1 SV=2)

HSP 1 Score: 502.7 bits (1293), Expect = 3.6e-141
Identity = 284/395 (71.90%), Postives = 319/395 (80.76%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPP+  E+   ++S+VWSSSTKMAPPTLRKP +   PQT+LR  +K     
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNK----- 60

Query: 61  STLPKALVSAPVEP------SQPILAEA-----ITQPALVAVTSTVIEEYDPARPNDYEE 120
              PK +VSAP +P      SQ +L  A       QPALV VTS+VIEEYDPARPNDYEE
Sbjct: 61  ---PKPIVSAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEE 120

Query: 121 YRVEKKRKAMEAEMRKELERRRQEEEEREKKEREDRERE-----YSDSRLNISGEEAWRR 180
           Y+ EKKRKA EAEM++E+++RRQE+EER+K+ERE+RE+E        SRLNISGEEAW+R
Sbjct: 121 YKREKKRKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKR 180

Query: 181 RAAK----SGAIPRSPSPPSSADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQG 240
           RAA     SG   RS SPP + DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQG
Sbjct: 181 RAAMSGGGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQG 240

Query: 241 LGKQEQGITTPLMAKKTDLRAGVIVNANDTKS----EKKVKSVNFNGLPTRVLLLRNMVG 300
           LGK EQGITTPLMAKKTD RAGVIVNA++ KS    +K VKSVN NG PTRVLLLRNMVG
Sbjct: 241 LGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVG 300

Query: 301 PGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDL 360
           PG+VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDL
Sbjct: 301 PGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDL 360

Query: 361 DGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF 372
           DGRYFGGR VRATFYDEE+FSKNELAP+PGE+PG+
Sbjct: 361 DGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387

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BLAST of Lcy04g023480 vs. ExPASy Swiss-Prot
Match: Q96I25 (Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-35
Identity = 146/408 (35.78%), Postives = 206/408 (50.49%), Query Frame = 0


Query: 5   LYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLR-KPSSVFAPQTVLRSQSKVKAATSTL 64
           LY DL       E   S +  WS + K+    L+ K +++   ++    QS V A    L
Sbjct: 3   LYDDL-----GVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDL 62

Query: 65  PKALVS--APVEPSQPILAEAITQP-----ALVAVTSTVIEEYDPARPNDYEEYRVEKKR 124
            +   S    +  + P +A  +  P     +   V   + +EYDP  PNDYE+     KR
Sbjct: 63  KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV---VKR 122

Query: 125 KAMEAEMRKELERRRQ-EEEEREKKERED----REREYSDSRLNISGEEAWRRRAAKSGA 184
           +  E + ++ELER+++ EE E+ +K+R +      R   DS  +   E   R+R+    A
Sbjct: 123 QREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAA 182

Query: 185 I------------------------PRSPS-----PPSSADGFSIGKSETG---GLGVGA 244
           I                        PRS S     PP   +     +S TG         
Sbjct: 183 IAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANM 242

Query: 245 GGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDTKSEKKVKS- 304
           GG  T A ++M K G++EGQGLGK EQG++T L  +KT  R G I+  + T+ +   KS 
Sbjct: 243 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSD 302

Query: 305 ----VNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVD 363
                     PT+V+LLRNMVG GEVD++LE E   EC KYG V + +IFEI  P  P D
Sbjct: 303 SNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAPDD 362

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BLAST of Lcy04g023480 vs. ExPASy Swiss-Prot
Match: Q8JZX4 (Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-34
Identity = 147/412 (35.68%), Postives = 209/412 (50.73%), Query Frame = 0


Query: 5   LYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLR-KPSSVFAPQTVLRSQSKVKAATSTL 64
           LY DL       E   S +  WS + K+    L+ K +++   ++    QS V A    L
Sbjct: 3   LYDDL-----GVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDL 62

Query: 65  PKALVS--APVEPSQPILAEAITQP-----ALVAVTSTVIEEYDPARPNDYEEYRVEKKR 124
            +   S    +  + P +A  +  P     +   V   + +EYDP  PNDYE+     KR
Sbjct: 63  KRGGSSDDRQIADTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV---VKR 122

Query: 125 KAMEAEMRKELERRRQ-EEEEREKKERED----REREYSDSRLNISGEEAWRRRAAKSGA 184
           +  E + ++ELER+++ EE E+ +K+R +      R   DS  +   E   R+R+    A
Sbjct: 123 QREERQRQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAA 182

Query: 185 I------------------------PRSPS-----PPSSADGFSIGKSETG---GLGVGA 244
           I                        PRS S     PP   +     +S TG         
Sbjct: 183 IAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANM 242

Query: 245 GGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDT---KSEKKV 304
           GG  T A ++M K G++EGQGLGK EQG++T L  +KT  R G I+  + T   +++   
Sbjct: 243 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDAS 302

Query: 305 KSVNFNGL------PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPN 363
           K  + N L      PT+V+LLRNMVG GEVD++LE E   EC KYG V + +IFEI  P 
Sbjct: 303 KKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PG 362

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BLAST of Lcy04g023480 vs. ExPASy Swiss-Prot
Match: Q2HJG2 (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.7e-18
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 268 VLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERS 327
           V++LRNMV P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  +
Sbjct: 434 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVA 493

Query: 328 EETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA 363
            ET KA+ DL+GR+F GR V A  YD+ERF  ++L+
Sbjct: 494 SETHKAIQDLNGRWFAGRKVVAEVYDQERFDNSDLS 529

[Close]

BLAST of Lcy04g023480 vs. ExPASy Swiss-Prot
Match: Q3UEB3 (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 8.7e-18
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 268 VLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERS 327
           V++LRNMV P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  +
Sbjct: 468 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA 527

Query: 328 EETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA 363
            ET KA+  L+GR+FGGR V A  YD+ERF  ++L+
Sbjct: 528 SETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563

[Close]

BLAST of Lcy04g023480 vs. ExPASy TrEMBL
Match: A0A6J1KSL4 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111496883 PE=4 SV=1)

HSP 1 Score: 678.3 bits (1749), Expect = 1.8e-191
Identity = 362/372 (97.31%), Postives = 365/372 (98.12%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSKVK AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA VSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKERE+REREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. ExPASy TrEMBL
Match: A0A6J1D044 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015835 PE=4 SV=1)

HSP 1 Score: 674.9 bits (1740), Expect = 2.0e-190
Identity = 360/372 (96.77%), Postives = 366/372 (98.39%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA  SA VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYR+EKKRKAME
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKERE+RER+YSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           +ADGF+IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNG PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. ExPASy TrEMBL
Match: A0A0A0KP45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 2.6e-190
Identity = 359/372 (96.51%), Postives = 365/372 (98.12%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PK  VS  VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKERE+RERE+SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. ExPASy TrEMBL
Match: A0A1S3AYL8 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484318 PE=4 SV=1)

HSP 1 Score: 670.2 bits (1728), Expect = 4.9e-189
Identity = 357/372 (95.97%), Postives = 364/372 (97.85%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ+K+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQNKIKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
            T PKA VS  VE SQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  LTHPKASVSTQVEASQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKER++RERE+SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKERDEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKAKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. ExPASy TrEMBL
Match: A0A6J1ELY8 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433765 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.2e-187
Identity = 357/372 (95.97%), Postives = 361/372 (97.04%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSKVK AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PK    A VEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPK----ASVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKERE+REREYSDSRLNISGEEAWRRRAAKSGA+PRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAVPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 368

[Close]

BLAST of Lcy04g023480 vs. NCBI nr
Match: XP_038882071.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida])

HSP 1 Score: 681.4 bits (1757), Expect = 4.4e-192
Identity = 362/372 (97.31%), Postives = 367/372 (98.66%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA VSAPVEPSQPILAE I QPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEVIAQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKERE+REREYSDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDE+RFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEDRFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. NCBI nr
Match: XP_023003194.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 678.3 bits (1749), Expect = 3.7e-191
Identity = 362/372 (97.31%), Postives = 365/372 (98.12%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSKVK AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA VSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKERE+REREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. NCBI nr
Match: XP_022146691.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia])

HSP 1 Score: 674.9 bits (1740), Expect = 4.1e-190
Identity = 360/372 (96.77%), Postives = 366/372 (98.39%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA  SA VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYR+EKKRKAME
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKERE+RER+YSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           +ADGF+IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNG PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. NCBI nr
Match: XP_004134609.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus] >KGN49456.1 hypothetical protein Csa_003083 [Cucumis sativus])

HSP 1 Score: 674.5 bits (1739), Expect = 5.3e-190
Identity = 359/372 (96.51%), Postives = 365/372 (98.12%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PK  VS  VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKERE+RERE+SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. NCBI nr
Match: KAG6594427.1 (DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026427.1 DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 673.7 bits (1737), Expect = 9.1e-190
Identity = 359/372 (96.51%), Postives = 364/372 (97.85%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSKVK AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA VSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREDREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AE RKELERRRQEEEEREKKERE+RERE+SDSRLNISGEEAWRRRAAKSGA+PRSPSPPS
Sbjct: 121 AETRKELERRRQEEEEREKKEREEREREHSDSRLNISGEEAWRRRAAKSGAVPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Lcy04g023480 vs. TAIR 10
Match: AT1G30480.1 (D111/G-patch domain-containing protein )

HSP 1 Score: 502.7 bits (1293), Expect = 2.6e-142
Identity = 284/395 (71.90%), Postives = 319/395 (80.76%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPP+  E+   ++S+VWSSSTKMAPPTLRKP +   PQT+LR  +K     
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNK----- 60

Query: 61  STLPKALVSAPVEP------SQPILAEA-----ITQPALVAVTSTVIEEYDPARPNDYEE 120
              PK +VSAP +P      SQ +L  A       QPALV VTS+VIEEYDPARPNDYEE
Sbjct: 61  ---PKPIVSAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEE 120

Query: 121 YRVEKKRKAMEAEMRKELERRRQEEEEREKKEREDRERE-----YSDSRLNISGEEAWRR 180
           Y+ EKKRKA EAEM++E+++RRQE+EER+K+ERE+RE+E        SRLNISGEEAW+R
Sbjct: 121 YKREKKRKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKR 180

Query: 181 RAAK----SGAIPRSPSPPSSADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQG 240
           RAA     SG   RS SPP + DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQG
Sbjct: 181 RAAMSGGGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQG 240

Query: 241 LGKQEQGITTPLMAKKTDLRAGVIVNANDTKS----EKKVKSVNFNGLPTRVLLLRNMVG 300
           LGK EQGITTPLMAKKTD RAGVIVNA++ KS    +K VKSVN NG PTRVLLLRNMVG
Sbjct: 241 LGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVG 300

Query: 301 PGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDL 360
           PG+VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDL
Sbjct: 301 PGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDL 360

Query: 361 DGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF 372
           DGRYFGGR VRATFYDEE+FSKNELAP+PGE+PG+
Sbjct: 361 DGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of Lcy04g023480 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 45.1 bits (105), Expect = 1.5e-04
Identity = 50/225 (22.22%), Postives = 97/225 (43.11%), Query Frame = 0


Query: 148 EYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPSSADGFSIG---KSETGGLGVGAGGQMT 207
           E + + LN++G+     RA K  A+      P +    + G     + GGL + A  +  
Sbjct: 336 EDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRAL 395

Query: 208 AAQRMMAKMGWKEGQGL---GKQEQGITTPLMAKKTDLRAG---VIVNANDTKSEKKVKS 267
             Q+ + + G     GL        G++T        L  G    +     +     V  
Sbjct: 396 LMQK-LDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIP 455

Query: 268 VNFN--GLPTRVLLLRNMVGPG-----EVDDELEEEVGSECAKYGTVTRVLIFEITEPNF 327
             F+  G+P+  LLL+NM  P      + D++++E+V  EC+K+G +  + + +      
Sbjct: 456 AGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK------ 515

Query: 328 PVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF 357
             +    ++++FE ++    A   L GR+F G+++ AT+   E +
Sbjct: 516 --NSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAY 551

[Close]

BLAST of Lcy04g023480 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 45.1 bits (105), Expect = 1.5e-04
Identity = 50/225 (22.22%), Postives = 97/225 (43.11%), Query Frame = 0


Query: 148 EYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPSSADGFSIG---KSETGGLGVGAGGQMT 207
           E + + LN++G+     RA K  A+      P +    + G     + GGL + A  +  
Sbjct: 374 EDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRAL 433

Query: 208 AAQRMMAKMGWKEGQGL---GKQEQGITTPLMAKKTDLRAG---VIVNANDTKSEKKVKS 267
             Q+ + + G     GL        G++T        L  G    +     +     V  
Sbjct: 434 LMQK-LDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIP 493

Query: 268 VNFN--GLPTRVLLLRNMVGPG-----EVDDELEEEVGSECAKYGTVTRVLIFEITEPNF 327
             F+  G+P+  LLL+NM  P      + D++++E+V  EC+K+G +  + + +      
Sbjct: 494 AGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK------ 553

Query: 328 PVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF 357
             +    ++++FE ++    A   L GR+F G+++ AT+   E +
Sbjct: 554 --NSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAY 589

[Close]

BLAST of Lcy04g023480 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 45.1 bits (105), Expect = 1.5e-04
Identity = 50/225 (22.22%), Postives = 97/225 (43.11%), Query Frame = 0


Query: 148 EYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPSSADGFSIG---KSETGGLGVGAGGQMT 207
           E + + LN++G+     RA K  A+      P +    + G     + GGL + A  +  
Sbjct: 385 EDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRAL 444

Query: 208 AAQRMMAKMGWKEGQGL---GKQEQGITTPLMAKKTDLRAG---VIVNANDTKSEKKVKS 267
             Q+ + + G     GL        G++T        L  G    +     +     V  
Sbjct: 445 LMQK-LDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIP 504

Query: 268 VNFN--GLPTRVLLLRNMVGPG-----EVDDELEEEVGSECAKYGTVTRVLIFEITEPNF 327
             F+  G+P+  LLL+NM  P      + D++++E+V  EC+K+G +  + + +      
Sbjct: 505 AGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK------ 564

Query: 328 PVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF 357
             +    ++++FE ++    A   L GR+F G+++ AT+   E +
Sbjct: 565 --NSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAY 600

The following BLAST results are available for this feature:

BLAST of Lcy04g023480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42698	3.6e-141	71.90	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thalia...	[more]
Q96I25	1.2e-35	35.78	Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1	[more]
Q8JZX4	1.0e-34	35.68	Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1	[more]
Q2HJG2	8.7e-18	46.88	Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1	[more]
Q3UEB3	8.7e-18	46.88	Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=...	[more]

BLAST of Lcy04g023480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSL4	1.8e-191	97.31	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita max...	[more]
A0A6J1D044	2.0e-190	96.77	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charanti...	[more]
A0A0A0KP45	2.6e-190	96.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1	[more]
A0A1S3AYL8	4.9e-189	95.97	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=36...	[more]
A0A6J1ELY8	1.2e-187	95.97	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita mos...	[more]

BLAST of Lcy04g023480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882071.1	4.4e-192	97.31	DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida]	[more]
XP_023003194.1	3.7e-191	97.31	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxim...	[more]
XP_022146691.1	4.1e-190	96.77	DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia]	[more]
XP_004134609.1	5.3e-190	96.51	DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus] >KG...	[more]
KAG6594427.1	9.1e-190	96.51	DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosp...	[more]

BLAST of Lcy04g023480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30480.1	2.6e-142	71.90	D111/G-patch domain-containing protein	[more]
AT2G16940.1	1.5e-04	22.22	Splicing factor, CC1-like	[more]
AT2G16940.3	1.5e-04	22.22	Splicing factor, CC1-like	[more]
AT2G16940.2	1.5e-04	22.22	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..40
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 200..246 e-value: 1.4E-15 score: 67.8
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 205..244 e-value: 8.9E-17 score: 60.7
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 202..248 score: 15.451051
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 268..349 e-value: 6.1E-28 score: 108.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 263..361 e-value: 4.4E-26 score: 92.9
IPR040052	Splicing factor 45	PIRSF	PIRSF031066	SPF45	coord: 144..368 e-value: 2.3E-99 score: 331.4 coord: 3..153 e-value: 2.6E-24 score: 84.2
IPR040052	Splicing factor 45	PANTHER	PTHR13288	SPLICING FACTOR 45 SPF45	coord: 1..363
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 267..353 score: 9.950859
IPR034653	SPF45, RNA recognition motif	CDD	cd12647	RRM_UHM_SPF45	coord: 265..361 e-value: 3.71019E-50 score: 161.671
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 269..355

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g023480.1	Lcy04g023480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0043484	regulation of RNA splicing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding