Lcy04g020940 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g020940
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	quinone oxidoreductase PIG3-like
Location	Chr04: 52364942 .. 52365148 (-)
RNA-Seq Expression	Lcy04g020940
Synteny	Lcy04g020940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGCAACGGCTGGCTTGCGAAACCGGTCTCCTGAAAACAAAGCAACCATTGTTAGTGAAGTTGAGAAGATAGTTTGGCCAGCCATTGCAGCAGGCAAGGTGAAGCCTGTAATCTTCAAGTATCTTCCATTGTCAGGAGCAGCAGAAGCCCACCAGTTAATGGAGAGTAGCAAGCATGTTGGGAAGATATTGCTAGTTCCCTGA

mRNA sequence

ATGTGTGCAACGGCTGGCTTGCGAAACCGGTCTCCTGAAAACAAAGCAACCATTGTTAGTGAAGTTGAGAAGATAGTTTGGCCAGCCATTGCAGCAGGCAAGGTGAAGCCTGTAATCTTCAAGTATCTTCCATTGTCAGGAGCAGCAGAAGCCCACCAGTTAATGGAGAGTAGCAAGCATGTTGGGAAGATATTGCTAGTTCCCTGA

Coding sequence (CDS)

ATGTGTGCAACGGCTGGCTTGCGAAACCGGTCTCCTGAAAACAAAGCAACCATTGTTAGTGAAGTTGAGAAGATAGTTTGGCCAGCCATTGCAGCAGGCAAGGTGAAGCCTGTAATCTTCAAGTATCTTCCATTGTCAGGAGCAGCAGAAGCCCACCAGTTAATGGAGAGTAGCAAGCATGTTGGGAAGATATTGCTAGTTCCCTGA

Protein sequence

MCATAGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKILLVP

Homology

[Close]

BLAST of Lcy04g020940 vs. ExPASy TrEMBL
Match: A0A0A0KN84 (PKS_ER domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517040 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNRSPENKA IVSEVEKIVWPAIAAGKVKPVIFKYLPLS AAEAH+LMESS H+GKI
Sbjct: 275 AGLRNRSPENKAVIVSEVEKIVWPAIAAGKVKPVIFKYLPLSRAAEAHKLMESSNHIGKI 334

Query: 65  LLVP 69
           LL+P
Sbjct: 335 LLIP 338

[Close]

BLAST of Lcy04g020940 vs. ExPASy TrEMBL
Match: A0A5D3E602 (Quinone oxidoreductase PIG3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003500 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNRS ENKA IVSEVEKIVWPAIAAGKVKPVIFKYLPLS AAEAHQLMESSKH+GKI
Sbjct: 262 AGLRNRSLENKAVIVSEVEKIVWPAIAAGKVKPVIFKYLPLSQAAEAHQLMESSKHIGKI 321

Query: 65  LLVP 69
           LL P
Sbjct: 322 LLTP 325

[Close]

BLAST of Lcy04g020940 vs. ExPASy TrEMBL
Match: A0A6J1CLB1 (quinone oxidoreductase PIG3-like OS=Momordica charantia OX=3673 GN=LOC111012331 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNR+ ENKA IV+EVE+IVWPAIAAGKVKPVIFKYLPLSGAAEAH+LMESSKH+GKI
Sbjct: 262 AGLRNRTTENKAVIVNEVEEIVWPAIAAGKVKPVIFKYLPLSGAAEAHKLMESSKHIGKI 321

Query: 65  LLVP 69
           LLVP
Sbjct: 322 LLVP 325

[Close]

BLAST of Lcy04g020940 vs. ExPASy TrEMBL
Match: A0A1S3CET3 (quinone oxidoreductase PIG3-like OS=Cucumis melo OX=3656 GN=LOC103500051 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNRS ENKA IVSEVEKIVWPAIAAGKVKPVIFKYLPLS AAEAHQLMESSKH+GKI
Sbjct: 262 AGLRNRSLENKAVIVSEVEKIVWPAIAAGKVKPVIFKYLPLSQAAEAHQLMESSKHIGKI 321

Query: 65  LLVP 69
           LL P
Sbjct: 322 LLTP 325

[Close]

BLAST of Lcy04g020940 vs. ExPASy TrEMBL
Match: A0A6J1CMH3 (quinone oxidoreductase PIG3-like OS=Momordica charantia OX=3673 GN=LOC111012333 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.8e-23
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNR+PENKA IV EVEK+VWPAIAAGKVKPVIFKYLPLSGA EAHQLMESS H+GKI
Sbjct: 227 AGLRNRTPENKAVIVREVEKMVWPAIAAGKVKPVIFKYLPLSGAEEAHQLMESSMHIGKI 286

Query: 65  LLVP 69
           LL+P
Sbjct: 287 LLIP 290

[Close]

BLAST of Lcy04g020940 vs. NCBI nr
Match: XP_038883903.1 (quinone oxidoreductase PIG3 [Benincasa hispida])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNRSPENKA IVSEVEKIVWPAIA GKVKPVIFKYLPLSGAAEAHQLMESSKH+GKI
Sbjct: 262 AGLRNRSPENKAVIVSEVEKIVWPAIAGGKVKPVIFKYLPLSGAAEAHQLMESSKHIGKI 321

Query: 65  LLVP 69
           LL P
Sbjct: 322 LLTP 325

[Close]

BLAST of Lcy04g020940 vs. NCBI nr
Match: XP_031742756.1 (quinone oxidoreductase PIG3 isoform X3 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNRSPENKA IVSEVEKIVWPAIAAGKVKPVIFKYLPLS AAEAH+LMESS H+GKI
Sbjct: 200 AGLRNRSPENKAVIVSEVEKIVWPAIAAGKVKPVIFKYLPLSRAAEAHKLMESSNHIGKI 259

Query: 65  LLVP 69
           LL+P
Sbjct: 260 LLIP 263

[Close]

BLAST of Lcy04g020940 vs. NCBI nr
Match: XP_031742755.1 (quinone oxidoreductase PIG3 isoform X2 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNRSPENKA IVSEVEKIVWPAIAAGKVKPVIFKYLPLS AAEAH+LMESS H+GKI
Sbjct: 219 AGLRNRSPENKAVIVSEVEKIVWPAIAAGKVKPVIFKYLPLSRAAEAHKLMESSNHIGKI 278

Query: 65  LLVP 69
           LL+P
Sbjct: 279 LLIP 282

[Close]

BLAST of Lcy04g020940 vs. NCBI nr
Match: XP_011658195.1 (quinone oxidoreductase PIG3 isoform X1 [Cucumis sativus] >KAE8647685.1 hypothetical protein Csa_003901 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNRSPENKA IVSEVEKIVWPAIAAGKVKPVIFKYLPLS AAEAH+LMESS H+GKI
Sbjct: 262 AGLRNRSPENKAVIVSEVEKIVWPAIAAGKVKPVIFKYLPLSRAAEAHKLMESSNHIGKI 321

Query: 65  LLVP 69
           LL+P
Sbjct: 322 LLIP 325

[Close]

BLAST of Lcy04g020940 vs. NCBI nr
Match: XP_008461464.1 (PREDICTED: quinone oxidoreductase PIG3-like [Cucumis melo] >KAA0035446.1 quinone oxidoreductase PIG3-like [Cucumis melo var. makuwa] >TYK31076.1 quinone oxidoreductase PIG3-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-23
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           AGLRNRS ENKA IVSEVEKIVWPAIAAGKVKPVIFKYLPLS AAEAHQLMESSKH+GKI
Sbjct: 262 AGLRNRSLENKAVIVSEVEKIVWPAIAAGKVKPVIFKYLPLSQAAEAHQLMESSKHIGKI 321

Query: 65  LLVP 69
           LL P
Sbjct: 322 LLTP 325

[Close]

BLAST of Lcy04g020940 vs. TAIR 10
Match: AT4G21580.1 (oxidoreductase, zinc-binding dehydrogenase family protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 49/62 (79.03%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           A LR RSPENKA +V EVEK VWPAI AGKVKPVI+KYLPLS AAE H LMESS H+GKI
Sbjct: 262 AALRPRSPENKAVVVREVEKNVWPAIEAGKVKPVIYKYLPLSQAAEGHSLMESSNHIGKI 321

Query: 65  LL 67
           LL
Sbjct: 322 LL 323

[Close]

BLAST of Lcy04g020940 vs. TAIR 10
Match: AT4G21580.2 (oxidoreductase, zinc-binding dehydrogenase family protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 49/62 (79.03%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           A LR RSPENKA +V EVEK VWPAI AGKVKPVI+KYLPLS AAE H LMESS H+GKI
Sbjct: 229 AALRPRSPENKAVVVREVEKNVWPAIEAGKVKPVIYKYLPLSQAAEGHSLMESSNHIGKI 288

Query: 65  LL 67
           LL
Sbjct: 289 LL 290

[Close]

BLAST of Lcy04g020940 vs. TAIR 10
Match: AT4G21580.3 (oxidoreductase, zinc-binding dehydrogenase family protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 49/62 (79.03%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 5   AGLRNRSPENKATIVSEVEKIVWPAIAAGKVKPVIFKYLPLSGAAEAHQLMESSKHVGKI 64
           A LR RSPENKA +V EVEK VWPAI AGKVKPVI+KYLPLS AAE H LMESS H+GKI
Sbjct: 256 AALRPRSPENKAVVVREVEKNVWPAIEAGKVKPVIYKYLPLSQAAEGHSLMESSNHIGKI 315

Query: 65  LL 67
           LL
Sbjct: 316 LL 317

The following BLAST results are available for this feature:

BLAST of Lcy04g020940 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g020940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN84	1.0e-23	90.63	PKS_ER domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517040 PE=4...	[more]
A0A5D3E602	2.9e-23	92.19	Quinone oxidoreductase PIG3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1CLB1	2.9e-23	89.06	quinone oxidoreductase PIG3-like OS=Momordica charantia OX=3673 GN=LOC111012331 ...	[more]
A0A1S3CET3	2.9e-23	92.19	quinone oxidoreductase PIG3-like OS=Cucumis melo OX=3656 GN=LOC103500051 PE=4 SV...	[more]
A0A6J1CMH3	3.8e-23	87.50	quinone oxidoreductase PIG3-like OS=Momordica charantia OX=3673 GN=LOC111012333 ...	[more]

BLAST of Lcy04g020940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883903.1	1.4e-24	93.75	quinone oxidoreductase PIG3 [Benincasa hispida]	[more]
XP_031742756.1	2.1e-23	90.63	quinone oxidoreductase PIG3 isoform X3 [Cucumis sativus]	[more]
XP_031742755.1	2.1e-23	90.63	quinone oxidoreductase PIG3 isoform X2 [Cucumis sativus]	[more]
XP_011658195.1	2.1e-23	90.63	quinone oxidoreductase PIG3 isoform X1 [Cucumis sativus] >KAE8647685.1 hypotheti...	[more]
XP_008461464.1	6.0e-23	92.19	PREDICTED: quinone oxidoreductase PIG3-like [Cucumis melo] >KAA0035446.1 quinone...	[more]

BLAST of Lcy04g020940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21580.1	1.2e-21	79.03	oxidoreductase, zinc-binding dehydrogenase family protein	[more]
AT4G21580.2	1.2e-21	79.03	oxidoreductase, zinc-binding dehydrogenase family protein	[more]
AT4G21580.3	1.2e-21	79.03	oxidoreductase, zinc-binding dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.180.10		coord: 1..68 e-value: 1.1E-12 score: 50.3
None	No IPR available	PFAM	PF13602	ADH_zinc_N_2	coord: 26..66 e-value: 6.9E-10 score: 40.1
None	No IPR available	PANTHER	PTHR48106	QUINONE OXIDOREDUCTASE PIG3-RELATED	coord: 4..68
None	No IPR available	PANTHER	PTHR48106:SF12	OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN	coord: 4..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g020940.1	Lcy04g020940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity