Lcy04g019940 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g019940
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING/U-box superfamily protein
Location	Chr04: 51564478 .. 51566224 (-)
RNA-Seq Expression	Lcy04g019940
Synteny	Lcy04g019940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAAATGGTCATATTTAAATCCAAACATGACGTCTTAATATTATCCCTTACAATCCTGAATCCAGCATTATTTATTTGGTACATACCTGAACCCGACCTCCGACGAGCCGGCCTTAATGGCCGTTGACTTAAACAGCCGGCAAAAGGAAGAGGAAGAACACCCTGTGCATAAAAACAAAAAATCATTAATCATCAAAGAAAATGTGTATTAATATAATCGTTCCTTAAACCGCCTGCTTTAAGTTAATTTGGAAAATTAATTAATCAATTTCATCAACTGTATTTCAATTATTTAGCAGTCCAATGTGGTGCTGCATTTTCCAAAGAAATAAGAGGGAGTCTCTGTAAAGCGTAAAGTAGCAGTAGCTCCACTTCTTCCTCAGCCATTTGTCATCTTCTTCTCTTCGCTCTTAATTGCCATCTTAATTTATTTTCCAGTCTCCTCTTTAAAAATTAAGCTGCATTTAAGACCTTCACGACTCTTTTATTTTTCTTTTTTGGGGCTCCGGGAATAATTAAAAACAGAGAGGTGGATTTCATCAGAATCTTTGAAGAAACTCACGAGATCTCCATGCCCAAAGGTAATCCTTAATTCCTAATTCCAACTATTTACATTTCCCCCCCAACGGCGTTGATTTCTTCTACACCATTTTCGATTTTTGAGAGAAAATTTTTCGAATCGCGAAAATGAGTCTTCTCAGTGTGATTTTACAGGAAGCGGCGAGGCGAGAAAGGGAGGCTAGGACGATTTGGGGATTCTTGAGCGACCAAATGGACGGTGTCGATGGAGGAGGGCGGCGACGGCGGAGTTTGAAGCAACGGCTAGGATTTAAGGTCATGGGCTGTTGTGGTGCTACTTGGGGACTCCGGCAGGCGACGGTGAGTGTTAGAGGCGGCGACGACGACGACGACAACGACCGGAGAGTGCCGGAGGTGATGAACACGCGCCGGTTACCGGAGGAGAGCGATTTGGATCGGAGTTGCTTGAGTCCGTTTTCCGTACCGTCGCCGGCGGCGTCGGGTATGAACTTGGCAACCGCACTGGCGGCGGAGCGTCGTTTGAGAGCGTCGCCACGTGGAGCGGAGGGGGGTTTTCTGGAATCTAATAACAACGATTACGACTCAGTGGGTGGAGTGATGGGGTACGGGACACCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACAGAGGGCGGCGGTGGCGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAGAAAGAGAGAAGAGGCGGGAAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAAAAGGGAGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGGTGTGCTCGAGGGAGCTGTGGTTAAATCGAGGATGTTGCCCGCTTTGCAACCGTCCGATCGTTGAGATTCTTGATATATTTTGAAGGAGTATGATAAGTGAGATGGGGATGAGAACAGAGGAAGTGCTTTTGCCTCAGGATTCGAGACAGACTGTTTTCATTGGACGGTACTGGACGATGCCGTATCTGGGCGACATGTGGATGCGGGTGAGAACTTTTTCACGTCCCACAAAAAAGATAAATTAATAGTTTCGATGTAATTCATAAATTCAAACTTTATATACATGGGATTGAACAACAACTACTACTTTCATGGTTGATTTTTTTCTCTTTTATTTTAAAAAAAGATTTGTATATTTGATTTTTTTTCTTTTTTTTTGGTGTGTGTGTGCTCGTATTTTTGCTTTCTC

mRNA sequence

TTTCAAATGGTCATATTTAAATCCAAACATGACGTCTTAATATTATCCCTTACAATCCTGAATCCAGCATTATTTATTTGGTACATACCTGAACCCGACCTCCGACGAGCCGGCCTTAATGGCCGTTGACTTAAACAGCCGGCAAAAGGAAGAGGAAGAACACCCTGTGCATAAAAACAAAAAATCATTAATCATCAAAGAAAATGTGTATTAATATAATCGTTCCTTAAACCGCCTGCTTTAAGTTAATTTGGAAAATTAATTAATCAATTTCATCAACTGTATTTCAATTATTTAGCAGTCCAATGTGGTGCTGCATTTTCCAAAGAAATAAGAGGGAGTCTCTGTAAAGCGTAAAGTAGCAGTAGCTCCACTTCTTCCTCAGCCATTTGTCATCTTCTTCTCTTCGCTCTTAATTGCCATCTTAATTTATTTTCCAGTCTCCTCTTTAAAAATTAAGCTGCATTTAAGACCTTCACGACTCTTTTATTTTTCTTTTTTGGGGCTCCGGGAATAATTAAAAACAGAGAGGTGGATTTCATCAGAATCTTTGAAGAAACTCACGAGATCTCCATGCCCAAAGGAAGCGGCGAGGCGAGAAAGGGAGGCTAGGACGATTTGGGGATTCTTGAGCGACCAAATGGACGGTGTCGATGGAGGAGGGCGGCGACGGCGGAGTTTGAAGCAACGGCTAGGATTTAAGGTCATGGGCTGTTGTGGTGCTACTTGGGGACTCCGGCAGGCGACGGTGAGTGTTAGAGGCGGCGACGACGACGACGACAACGACCGGAGAGTGCCGGAGGTGATGAACACGCGCCGGTTACCGGAGGAGAGCGATTTGGATCGGAGTTGCTTGAGTCCGTTTTCCGTACCGTCGCCGGCGGCGTCGGGTATGAACTTGGCAACCGCACTGGCGGCGGAGCGTCGTTTGAGAGCGTCGCCACGTGGAGCGGAGGGGGGTTTTCTGGAATCTAATAACAACGATTACGACTCAGTGGGTGGAGTGATGGGGTACGGGACACCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACAGAGGGCGGCGGTGGCGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAGAAAGAGAGAAGAGGCGGGAAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAAAAGGGAGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGGTGTGCTCGAGGGAGCTGTGGTTAAATCGAGGATGTTGCCCGCTTTGCAACCGTCCGATCGTTGAGATTCTTGATATATTTTGAAGGAGTATGATAAGTGAGATGGGGATGAGAACAGAGGAAGTGCTTTTGCCTCAGGATTCGAGACAGACTGTTTTCATTGGACGGTACTGGACGATGCCGTATCTGGGCGACATGTGGATGCGGGTGAGAACTTTTTCACGTCCCACAAAAAAGATAAATTAATAGTTTCGATGTAATTCATAAATTCAAACTTTATATACATGGGATTGAACAACAACTACTACTTTCATGGTTGATTTTTTTCTCTTTTATTTTAAAAAAAGATTTGTATATTTGATTTTTTTTCTTTTTTTTTGGTGTGTGTGTGCTCGTATTTTTGCTTTCTC

Coding sequence (CDS)

ATGGACGGTGTCGATGGAGGAGGGCGGCGACGGCGGAGTTTGAAGCAACGGCTAGGATTTAAGGTCATGGGCTGTTGTGGTGCTACTTGGGGACTCCGGCAGGCGACGGTGAGTGTTAGAGGCGGCGACGACGACGACGACAACGACCGGAGAGTGCCGGAGGTGATGAACACGCGCCGGTTACCGGAGGAGAGCGATTTGGATCGGAGTTGCTTGAGTCCGTTTTCCGTACCGTCGCCGGCGGCGTCGGGTATGAACTTGGCAACCGCACTGGCGGCGGAGCGTCGTTTGAGAGCGTCGCCACGTGGAGCGGAGGGGGGTTTTCTGGAATCTAATAACAACGATTACGACTCAGTGGGTGGAGTGATGGGGTACGGGACACCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACAGAGGGCGGCGGTGGCGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAGAAAGAGAGAAGAGGCGGGAAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAAAAGGGAGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGGTGTGCTCGAGGGAGCTGTGGTTAAATCGAGGATGTTGCCCGCTTTGCAACCGTCCGATCGTTGAGATTCTTGATATATTTTGA

Protein sequence

MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVPEVMNTRRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDSVGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF

Homology

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BLAST of Lcy04g019940 vs. ExPASy Swiss-Prot
Match: Q8LA32 (Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 159 EEAGNDSVCCVCMGRKKGAAFIPCGH-TFCRVCSRELWLNRGCCPLCNRPIVEILDI 215
           +E+G+ + C +CM   K  A +PC H   C  C++EL L    CP+C +PI E+L+I
Sbjct: 294 DESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEI 350

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BLAST of Lcy04g019940 vs. ExPASy Swiss-Prot
Match: Q8BFW4 (Tripartite motif-containing protein 65 OS=Mus musculus OX=10090 GN=Trim65 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.4e-04
Identity = 19/47 (40.43%), Postives = 27/47 (57.45%), Query Frame = 0


Query: 167 CCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGC---CPLCNRPIVE 211
           C +C+GR +    +PCGH+FC  C ++ W  R C   CP C +P  E
Sbjct: 13  CSICLGRYRDPVTLPCGHSFCGNCIQDSW--RSCEKSCPECRQPFPE 57

[Close]

BLAST of Lcy04g019940 vs. ExPASy TrEMBL
Match: A0A6J1IJK3 (uncharacterized protein LOC111478017 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478017 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.3e-95
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVP--EVMNT 60
           MDGVDGGGRRR+SLKQRLGFKVMGCCGATWG R AT SVRGG DDDD+D+RVP  EV N 
Sbjct: 1   MDGVDGGGRRRQSLKQRLGFKVMGCCGATWGSRPATGSVRGGGDDDDDDQRVPETEVTNP 60

Query: 61  RRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDS 120
           RR  EE  LDRSC+SP SVPSPA SGMNLATALAAERRLRASPRGAEGGF+ES+NND+DS
Sbjct: 61  RRFQEERQLDRSCMSPLSVPSPATSGMNLATALAAERRLRASPRGAEGGFVESSNNDFDS 120

Query: 121 VGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAA 180
           +GG+M   TPL+VSL+RLL+ET+ G  GG G LGVAE+KREEAGNDS+CCVCMGRKKGAA
Sbjct: 121 LGGMMVTETPLKVSLIRLLKETD-GSDGGRGILGVAEKKREEAGNDSMCCVCMGRKKGAA 180

Query: 181 FIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           FIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 181 FIPCGHTFCRVCSRELWLNRGFCPLCNRPIMEILDIF 216

[Close]

BLAST of Lcy04g019940 vs. ExPASy TrEMBL
Match: A0A6J1ISH8 (uncharacterized protein LOC111478017 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478017 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.3e-95
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVP--EVMNT 60
           MDGVDGGGRRR+SLKQRLGFKVMGCCGATWG R AT SVRGG DDDD+D+RVP  EV N 
Sbjct: 29  MDGVDGGGRRRQSLKQRLGFKVMGCCGATWGSRPATGSVRGGGDDDDDDQRVPETEVTNP 88

Query: 61  RRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDS 120
           RR  EE  LDRSC+SP SVPSPA SGMNLATALAAERRLRASPRGAEGGF+ES+NND+DS
Sbjct: 89  RRFQEERQLDRSCMSPLSVPSPATSGMNLATALAAERRLRASPRGAEGGFVESSNNDFDS 148

Query: 121 VGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAA 180
           +GG+M   TPL+VSL+RLL+ET+ G  GG G LGVAE+KREEAGNDS+CCVCMGRKKGAA
Sbjct: 149 LGGMMVTETPLKVSLIRLLKETD-GSDGGRGILGVAEKKREEAGNDSMCCVCMGRKKGAA 208

Query: 181 FIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           FIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 209 FIPCGHTFCRVCSRELWLNRGFCPLCNRPIMEILDIF 244

[Close]

BLAST of Lcy04g019940 vs. ExPASy TrEMBL
Match: A0A1S3AZT0 (uncharacterized protein LOC103484644 OS=Cucumis melo OX=3656 GN=LOC103484644 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.4e-92
Identity = 179/217 (82.49%), Postives = 189/217 (87.10%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVP--EVMNT 60
           MDGVDGGGRRR SLKQRLGFKVMGCCGATWG R  +VSVR G  +DD DRRVP  EVMNT
Sbjct: 1   MDGVDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSVSVRDGGGEDD-DRRVPDLEVMNT 60

Query: 61  RRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDS 120
           RR  EE +LDRSCLSP SV SP  SGMNLATALAAERRLRASPRGAEGG +E NNND+DS
Sbjct: 61  RR--EERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGGIVEFNNNDFDS 120

Query: 121 VGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAA 180
             G+M  GTPLRVSL+RLLEETE GG  GGGNLGVAE+KREE GNDS+CCVCMGRKKGAA
Sbjct: 121 AVGMMETGTPLRVSLLRLLEETE-GGCDGGGNLGVAEKKREETGNDSMCCVCMGRKKGAA 180

Query: 181 FIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           FIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 181 FIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 213

[Close]

BLAST of Lcy04g019940 vs. ExPASy TrEMBL
Match: A0A6J1GFZ0 (uncharacterized protein LOC111453829 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453829 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.2e-92
Identity = 176/218 (80.73%), Postives = 194/218 (88.99%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVR-GGDDDDDNDRRVP--EVMN 60
           MDGVDGGGRRR+SLKQRLGFKVMGCCGATWG R AT SVR GG DDDD+D+RVP  EVMN
Sbjct: 1   MDGVDGGGRRRQSLKQRLGFKVMGCCGATWGSRPATGSVRGGGGDDDDDDQRVPETEVMN 60

Query: 61  TRRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYD 120
            RR  +E  LDRS +SP SVPSPA SGMNLATALAAERRLRASPRGAE GF+ES+NND+D
Sbjct: 61  PRRFQDERQLDRSFMSPLSVPSPATSGMNLATALAAERRLRASPRGAEVGFVESSNNDFD 120

Query: 121 SVGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGA 180
           S+GG+M   TPL+VSL+RLL+ET+ G  GG G+LGVAE+KREEAGNDS+CCVCMGRKKGA
Sbjct: 121 SLGGMMVTETPLKVSLIRLLKETD-GSDGGRGSLGVAEKKREEAGNDSMCCVCMGRKKGA 180

Query: 181 AFIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           AFIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 181 AFIPCGHTFCRVCSRELWLNRGFCPLCNRPIMEILDIF 217

[Close]

BLAST of Lcy04g019940 vs. ExPASy TrEMBL
Match: A0A6J1GH19 (uncharacterized protein LOC111453829 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453829 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.2e-92
Identity = 176/218 (80.73%), Postives = 194/218 (88.99%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVR-GGDDDDDNDRRVP--EVMN 60
           MDGVDGGGRRR+SLKQRLGFKVMGCCGATWG R AT SVR GG DDDD+D+RVP  EVMN
Sbjct: 29  MDGVDGGGRRRQSLKQRLGFKVMGCCGATWGSRPATGSVRGGGGDDDDDDQRVPETEVMN 88

Query: 61  TRRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYD 120
            RR  +E  LDRS +SP SVPSPA SGMNLATALAAERRLRASPRGAE GF+ES+NND+D
Sbjct: 89  PRRFQDERQLDRSFMSPLSVPSPATSGMNLATALAAERRLRASPRGAEVGFVESSNNDFD 148

Query: 121 SVGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGA 180
           S+GG+M   TPL+VSL+RLL+ET+ G  GG G+LGVAE+KREEAGNDS+CCVCMGRKKGA
Sbjct: 149 SLGGMMVTETPLKVSLIRLLKETD-GSDGGRGSLGVAEKKREEAGNDSMCCVCMGRKKGA 208

Query: 181 AFIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           AFIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 209 AFIPCGHTFCRVCSRELWLNRGFCPLCNRPIMEILDIF 245

[Close]

BLAST of Lcy04g019940 vs. NCBI nr
Match: XP_022977839.1 (uncharacterized protein LOC111478017 isoform X1 [Cucurbita maxima])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVP--EVMNT 60
           MDGVDGGGRRR+SLKQRLGFKVMGCCGATWG R AT SVRGG DDDD+D+RVP  EV N 
Sbjct: 29  MDGVDGGGRRRQSLKQRLGFKVMGCCGATWGSRPATGSVRGGGDDDDDDQRVPETEVTNP 88

Query: 61  RRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDS 120
           RR  EE  LDRSC+SP SVPSPA SGMNLATALAAERRLRASPRGAEGGF+ES+NND+DS
Sbjct: 89  RRFQEERQLDRSCMSPLSVPSPATSGMNLATALAAERRLRASPRGAEGGFVESSNNDFDS 148

Query: 121 VGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAA 180
           +GG+M   TPL+VSL+RLL+ET+ G  GG G LGVAE+KREEAGNDS+CCVCMGRKKGAA
Sbjct: 149 LGGMMVTETPLKVSLIRLLKETD-GSDGGRGILGVAEKKREEAGNDSMCCVCMGRKKGAA 208

Query: 181 FIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           FIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 209 FIPCGHTFCRVCSRELWLNRGFCPLCNRPIMEILDIF 244

[Close]

BLAST of Lcy04g019940 vs. NCBI nr
Match: XP_022977841.1 (uncharacterized protein LOC111478017 isoform X2 [Cucurbita maxima] >XP_022977842.1 uncharacterized protein LOC111478017 isoform X2 [Cucurbita maxima])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVP--EVMNT 60
           MDGVDGGGRRR+SLKQRLGFKVMGCCGATWG R AT SVRGG DDDD+D+RVP  EV N 
Sbjct: 1   MDGVDGGGRRRQSLKQRLGFKVMGCCGATWGSRPATGSVRGGGDDDDDDQRVPETEVTNP 60

Query: 61  RRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDS 120
           RR  EE  LDRSC+SP SVPSPA SGMNLATALAAERRLRASPRGAEGGF+ES+NND+DS
Sbjct: 61  RRFQEERQLDRSCMSPLSVPSPATSGMNLATALAAERRLRASPRGAEGGFVESSNNDFDS 120

Query: 121 VGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAA 180
           +GG+M   TPL+VSL+RLL+ET+ G  GG G LGVAE+KREEAGNDS+CCVCMGRKKGAA
Sbjct: 121 LGGMMVTETPLKVSLIRLLKETD-GSDGGRGILGVAEKKREEAGNDSMCCVCMGRKKGAA 180

Query: 181 FIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           FIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 181 FIPCGHTFCRVCSRELWLNRGFCPLCNRPIMEILDIF 216

[Close]

BLAST of Lcy04g019940 vs. NCBI nr
Match: XP_038883241.1 (uncharacterized protein LOC120074251 isoform X2 [Benincasa hispida] >XP_038883242.1 uncharacterized protein LOC120074251 isoform X2 [Benincasa hispida])

HSP 1 Score: 351.3 bits (900), Expect = 6.0e-93
Identity = 180/217 (82.95%), Postives = 189/217 (87.10%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVP--EVMNT 60
           MDGVDGGGR+R SLKQRLGFKVMGCCGATWG R  TVSVR G  DDD DRRVP  EV NT
Sbjct: 1   MDGVDGGGRQRPSLKQRLGFKVMGCCGATWGFRSPTVSVRNGGGDDD-DRRVPDVEVTNT 60

Query: 61  RRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDS 120
           RR  EE +LDRSCLSP SV SP  SGMNLATALAAERRLRASPRG EGG +E NNND+DS
Sbjct: 61  RR--EERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGMEGGIVEFNNNDFDS 120

Query: 121 VGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAA 180
           +GG+MG GTPLRVSLMRLLEET+ GG GG GNLGVAE KREE GNDS+CCVCMGRKKGAA
Sbjct: 121 LGGMMGTGTPLRVSLMRLLEETD-GGRGGCGNLGVAETKREEPGNDSMCCVCMGRKKGAA 180

Query: 181 FIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           FIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 181 FIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 213

[Close]

BLAST of Lcy04g019940 vs. NCBI nr
Match: XP_038883240.1 (uncharacterized protein LOC120074251 isoform X1 [Benincasa hispida])

HSP 1 Score: 351.3 bits (900), Expect = 6.0e-93
Identity = 180/217 (82.95%), Postives = 189/217 (87.10%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVP--EVMNT 60
           MDGVDGGGR+R SLKQRLGFKVMGCCGATWG R  TVSVR G  DDD DRRVP  EV NT
Sbjct: 29  MDGVDGGGRQRPSLKQRLGFKVMGCCGATWGFRSPTVSVRNGGGDDD-DRRVPDVEVTNT 88

Query: 61  RRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDS 120
           RR  EE +LDRSCLSP SV SP  SGMNLATALAAERRLRASPRG EGG +E NNND+DS
Sbjct: 89  RR--EERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGMEGGIVEFNNNDFDS 148

Query: 121 VGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAA 180
           +GG+MG GTPLRVSLMRLLEET+ GG GG GNLGVAE KREE GNDS+CCVCMGRKKGAA
Sbjct: 149 LGGMMGTGTPLRVSLMRLLEETD-GGRGGCGNLGVAETKREEPGNDSMCCVCMGRKKGAA 208

Query: 181 FIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           FIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 209 FIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 241

[Close]

BLAST of Lcy04g019940 vs. NCBI nr
Match: XP_008440052.1 (PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo] >XP_008440053.1 PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo])

HSP 1 Score: 348.2 bits (892), Expect = 5.1e-92
Identity = 179/217 (82.49%), Postives = 189/217 (87.10%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVP--EVMNT 60
           MDGVDGGGRRR SLKQRLGFKVMGCCGATWG R  +VSVR G  +DD DRRVP  EVMNT
Sbjct: 1   MDGVDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSVSVRDGGGEDD-DRRVPDLEVMNT 60

Query: 61  RRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDS 120
           RR  EE +LDRSCLSP SV SP  SGMNLATALAAERRLRASPRGAEGG +E NNND+DS
Sbjct: 61  RR--EERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGGIVEFNNNDFDS 120

Query: 121 VGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAA 180
             G+M  GTPLRVSL+RLLEETE GG  GGGNLGVAE+KREE GNDS+CCVCMGRKKGAA
Sbjct: 121 AVGMMETGTPLRVSLLRLLEETE-GGCDGGGNLGVAEKKREETGNDSMCCVCMGRKKGAA 180

Query: 181 FIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           FIPCGHTFCRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 181 FIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 213

[Close]

BLAST of Lcy04g019940 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein )

HSP 1 Score: 188.0 bits (476), Expect = 8.1e-48
Identity = 113/226 (50.00%), Postives = 128/226 (56.64%), Query Frame = 0


Query: 1   MDGVDGGGRRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVPEVMNTRR 60
           MDG+D   RR+R+LK+RLGFK +GCCG TWGLR   ++   G+DDD+            R
Sbjct: 29  MDGLDRSRRRKRTLKERLGFKRIGCCGPTWGLR---LTSNTGEDDDEPFE--------NR 88

Query: 61  LPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDSVG 120
           L   SD          V  P   GMNLATALAAER  R     A G              
Sbjct: 89  LVSGSD---------HVTGPLNQGMNLATALAAERNYRTEETEASGSL------------ 148

Query: 121 GVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREE-----------AGNDSVCCV 180
                 TPL+VSLMRLLEET          + V E + E              NDSVCCV
Sbjct: 149 ------TPLKVSLMRLLEET-------AERVVVEENETERVTASASSTVRGVNNDSVCCV 208

Query: 181 CMGRKKGAAFIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           CMGRKKGAAFIPCGHTFCRVCSRE+WLNRG CPLCNRPI+EILDI+
Sbjct: 209 CMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209

[Close]

BLAST of Lcy04g019940 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein )

HSP 1 Score: 165.6 bits (418), Expect = 4.3e-41
Identity = 103/209 (49.28%), Postives = 116/209 (55.50%), Query Frame = 0


Query: 9   RRRRSLKQRLGFKVMGCCGATWGLRQATVSVRGGDDDDDNDRRVPEVMNTRRLPEESDLD 68
           RR+R+LK+RL FK +GCCG TW LR    +        D++  + E+     L  ESD  
Sbjct: 38  RRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDE--IEELQIETGLVLESD-- 97

Query: 69  RSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDYDSVGGVMGYGTP 128
                       + +GMNLATAL AER  R     AE                     TP
Sbjct: 98  ----------HGSGTGMNLATALEAERYNRGESTEAEADM------------------TP 157

Query: 129 LRVSLMRLLEETEGG--GGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAAFIPCGHTF 188
            RVSLMRLLEET        G     +        GNDSVCCVCMGRKKGAAFIPCGHTF
Sbjct: 158 RRVSLMRLLEETAEKIVDDDGKETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTF 214

Query: 189 CRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           CRVCSRELWLNRG CPLCNRPI+EILDIF
Sbjct: 218 CRVCSRELWLNRGSCPLCNRPIIEILDIF 214

[Close]

BLAST of Lcy04g019940 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-31
Identity = 87/219 (39.73%), Postives = 114/219 (52.05%), Query Frame = 0


Query: 2   DGVDGGGR---RRRSLKQRLGFKVMGCCG--ATWGLRQATVSVRGGDDDDDNDRRVPEVM 61
           D ++GG R   +  +LKQRL F  +GCCG   T  LRQA   +   DDDDD +    +V+
Sbjct: 29  DQINGGDRTMSKWTTLKQRLRFDWVGCCGKPLTLRLRQAETPI-VVDDDDDEEESQNQVV 88

Query: 62  NTRRLPEESDLDRSCLSPFSVPSPAASGMNLATALAAERRLRASPRGAEGGFLESNNNDY 121
           +       ++LD  CL+         S  NLA ALA ER    +                
Sbjct: 89  DFSDPGTGTELD--CLT-------RGSTRNLAEALAEERLAHVTEEET------------ 148

Query: 122 DSVGGVMGYGTPLRVSLMRLLEETEGGGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKG 181
                        +V LMRLL E++G            +      GND +CCVCMGR+KG
Sbjct: 149 ----------AVTKVPLMRLLAESDG-----------CDSTTTWLGNDPLCCVCMGREKG 204

Query: 182 AAFIPCGHTFCRVCSRELWLNRGCCPLCNRPIVEILDIF 216
           AAFIPCGHT+CRVCSRE+W+NRG CPLCNR I ++LD++
Sbjct: 209 AAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

[Close]

BLAST of Lcy04g019940 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-22
Identity = 60/133 (45.11%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 83  SGMNLATALAAERRLRASPRGAEGGFLESNNNDYDSVGGVMGYGTPLRVSLMRLLEETEG 142
           SG     A + E R+R     AE   L +   +  +   V     P R+SLM LLEE EG
Sbjct: 122 SGNVTEEASSVEGRIRLGAVLAEERALSAREEETPAEREV----EPARMSLMELLEENEG 181

Query: 143 GGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGCCP 202
                  +    E        +  CCVCM R KGAAFIPCGHTFCR+CSRELW+ RG CP
Sbjct: 182 QMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCP 241

Query: 203 LCNRPIVEILDIF 216
           LCN  I+E+LD+F
Sbjct: 242 LCNTTILEVLDLF 250

[Close]

BLAST of Lcy04g019940 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-22
Identity = 60/133 (45.11%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 83  SGMNLATALAAERRLRASPRGAEGGFLESNNNDYDSVGGVMGYGTPLRVSLMRLLEETEG 142
           SG     A + E R+R     AE   L +   +  +   V     P R+SLM LLEE EG
Sbjct: 122 SGNVTEEASSVEGRIRLGAVLAEERALSAREEETPAEREV----EPARMSLMELLEENEG 181

Query: 143 GGGGGGGNLGVAERKREEAGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGCCP 202
                  +    E        +  CCVCM R KGAAFIPCGHTFCR+CSRELW+ RG CP
Sbjct: 182 QMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCP 241

Query: 203 LCNRPIVEILDIF 216
           LCN  I+E+LD+F
Sbjct: 242 LCNTTILEVLDLF 250

The following BLAST results are available for this feature:

BLAST of Lcy04g019940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LA32	1.5e-06	40.35	Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL...	[more]
Q8BFW4	2.4e-04	40.43	Tripartite motif-containing protein 65 OS=Mus musculus OX=10090 GN=Trim65 PE=1 S...	[more]

BLAST of Lcy04g019940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJK3	5.3e-95	82.03	uncharacterized protein LOC111478017 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ISH8	5.3e-95	82.03	uncharacterized protein LOC111478017 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3AZT0	2.4e-92	82.49	uncharacterized protein LOC103484644 OS=Cucumis melo OX=3656 GN=LOC103484644 PE=...	[more]
A0A6J1GFZ0	4.2e-92	80.73	uncharacterized protein LOC111453829 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GH19	4.2e-92	80.73	uncharacterized protein LOC111453829 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lcy04g019940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977839.1	1.1e-94	82.03	uncharacterized protein LOC111478017 isoform X1 [Cucurbita maxima]	[more]
XP_022977841.1	1.1e-94	82.03	uncharacterized protein LOC111478017 isoform X2 [Cucurbita maxima] >XP_022977842...	[more]
XP_038883241.1	6.0e-93	82.95	uncharacterized protein LOC120074251 isoform X2 [Benincasa hispida] >XP_03888324...	[more]
XP_038883240.1	6.0e-93	82.95	uncharacterized protein LOC120074251 isoform X1 [Benincasa hispida]	[more]
XP_008440052.1	5.1e-92	82.49	PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo] >XP_008440053.1 P...	[more]

BLAST of Lcy04g019940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03965.1	8.1e-48	50.00	RING/U-box superfamily protein	[more]
AT4G22250.1	4.3e-41	49.28	RING/U-box superfamily protein	[more]
AT1G62370.1	1.8e-31	39.73	RING/U-box superfamily protein	[more]
AT3G25030.1	3.4e-22	45.11	RING/U-box superfamily protein	[more]
AT3G25030.2	3.4e-22	45.11	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 167..204 e-value: 7.2E-5 score: 32.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 167..205 score: 10.571388
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 151..215 e-value: 1.2E-12 score: 49.0
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 164..210 e-value: 1.7E-10 score: 40.6
None	No IPR available	PANTHER	PTHR46629:SF22	RING/U-BOX SUPERFAMILY PROTEIN	coord: 1..215
None	No IPR available	PANTHER	PTHR46629	OS01G0917900 PROTEIN	coord: 1..215
None	No IPR available	CDD	cd16449	RING-HC	coord: 167..204 e-value: 5.76576E-8 score: 45.5361
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 158..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g019940.1	Lcy04g019940.1	mRNA