Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGCATCGACAAATCCCATTTCCTACCACTGCAAAAGATCAAAGATTTCGTTTGCTGTGAGGGAGAAGACTTCAATTTGGCTTTGCCAATTGAAAAGATAGCTTGTGGGGCTTATGAAGGCCTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCTGTGCTAGAAGTTGGGCGTGGGGCTCCTCCACTGCCTGTTCGTGTTGATGATGCTATTCTCAAGCCTGCAGATTTGTGCAAACTTCGCAAGGCTACAATTGTGGTCAGCAAAGAACAGCTTGAGTTGCTTTTGAGAAACTCCAAAAAGTTTGGCTCCAAAGGCATTGCTGTTCAGTTCTCTGATACTTTCCAGTTCGACGAACCATGCCCCAGATGGCGCCCGGCCTTGCCCACGATTCCGGAGGTTCACAATTTTTAG
mRNA sequence
ATGGGAAATTGCATCGACAAATCCCATTTCCTACCACTGCAAAAGATCAAAGATTTCGTTTGCTGTGAGGGAGAAGACTTCAATTTGGCTTTGCCAATTGAAAAGATAGCTTGTGGGGCTTATGAAGGCCTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCTGTGCTAGAAGTTGGGCGTGGGGCTCCTCCACTGCCTGTTCGTGTTGATGATGCTATTCTCAAGCCTGCAGATTTGTGCAAACTTCGCAAGGCTACAATTGTGGTCAGCAAAGAACAGCTTGAGTTGCTTTTGAGAAACTCCAAAAAGTTTGGCTCCAAAGGCATTGCTGTTCAGTTCTCTGATACTTTCCAGTTCGACGAACCATGCCCCAGATGGCGCCCGGCCTTGCCCACGATTCCGGAGGTTCACAATTTTTAG
Coding sequence (CDS)
ATGGGAAATTGCATCGACAAATCCCATTTCCTACCACTGCAAAAGATCAAAGATTTCGTTTGCTGTGAGGGAGAAGACTTCAATTTGGCTTTGCCAATTGAAAAGATAGCTTGTGGGGCTTATGAAGGCCTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCTGTGCTAGAAGTTGGGCGTGGGGCTCCTCCACTGCCTGTTCGTGTTGATGATGCTATTCTCAAGCCTGCAGATTTGTGCAAACTTCGCAAGGCTACAATTGTGGTCAGCAAAGAACAGCTTGAGTTGCTTTTGAGAAACTCCAAAAAGTTTGGCTCCAAAGGCATTGCTGTTCAGTTCTCTGATACTTTCCAGTTCGACGAACCATGCCCCAGATGGCGCCCGGCCTTGCCCACGATTCCGGAGGTTCACAATTTTTAG
Protein sequence
MGNCIDKSHFLPLQKIKDFVCCEGEDFNLALPIEKIACGAYEGLKLTSQAFTTSSAVLEVGRGAPPLPVRVDDAILKPADLCKLRKATIVVSKEQLELLLRNSKKFGSKGIAVQFSDTFQFDEPCPRWRPALPTIPEVHNF
Homology
BLAST of Lcy04g019630 vs. ExPASy TrEMBL
Match:
A0A0A0KHP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)
HSP 1 Score: 196.8 bits (499), Expect = 6.0e-47
Identity = 99/143 (69.23%), Postives = 111/143 (77.62%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGEDFNLALPIEKIACGAYEGLKLTSQAFTTSSAV--L 60
MGNCI+ HF PLQKIK F+CCE ED NLALPIE IA +QAFTTSSAV
Sbjct: 1 MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAA-------CKNQAFTTSSAVAEA 60
Query: 61 EVGRGAPPLPVRVDDAILKPADLCKLRKATIVVSKEQLELLLRNSKKFGSKGIAVQFSDT 120
EV G PPLPVR+D +I+KPADLCKL K TIVVSK+QLEL+LR SK FGSKGIAVQFSD+
Sbjct: 61 EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120
Query: 121 FQFDEPCPRWRPALPTIPEVHNF 142
F+ D+ CPRW PALPTIPEV N+
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136
BLAST of Lcy04g019630 vs. ExPASy TrEMBL
Match:
A0A5D3CLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00250 PE=4 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 1.2e-44
Identity = 96/141 (68.09%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGEDFNLALPIEKIACGAYEGLKLTSQAFTTSSAVLEV 60
MGNCI+ HF PLQKIK F+CCE E +L LPI +A AY K SQAFTTSSAV EV
Sbjct: 1 MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVA--AYGDCK--SQAFTTSSAVAEV 60
Query: 61 GRGAPPLPVRVDDAILKPADLCKLRKATIVVSKEQLELLLRNSKKFGSKGIAVQFSDTFQ 120
PPLPVR+D +I+KPAD KL KATIVVSK+QLEL+LR SK FGSKGIAVQFSD F+
Sbjct: 61 QHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFK 120
Query: 121 FDEPCPRWRPALPTIPEVHNF 142
D+ CPRW PALPTIPEV N+
Sbjct: 121 VDDGCPRWHPALPTIPEVRNY 137
BLAST of Lcy04g019630 vs. ExPASy TrEMBL
Match:
A0A6A1W907 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 60/157 (38.22%), Postives = 80/157 (50.96%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGE-DFNLALPIEKIACGAYEGLKLTSQAFTTSSAV-- 60
MGNC D +KI+ V EGE +F+ P+EKI CG Y G KL + S +
Sbjct: 1 MGNCADVMLRPTEEKIRVLVFNEGEKEFSARTPVEKITCGPYSGFKLVHHSQPDSPLLPD 60
Query: 61 -------------LEVGRGAPPLPVRVDDAILKPADLCKLRKATIVVSKEQLELLLRNSK 120
L+ PP+P R + + K +K IVV+K QLELLLR++
Sbjct: 61 ARLQPGELYYLVPLQAQPHHPPIPSRTAN-----QETGKQKKVKIVVTKGQLELLLRSTD 120
Query: 121 KFGSKGIAVQFSDTFQFDEPCPRWRPALPTIPEVHNF 142
KF SK IA+ +FQ E +WRP+L IPEVH+F
Sbjct: 121 KFKSKDIAIHCLGSFQVGEGRRKWRPSLTMIPEVHSF 152
BLAST of Lcy04g019630 vs. ExPASy TrEMBL
Match:
A0A5N6Q7Y4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000047 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 64/153 (41.83%), Postives = 83/153 (54.25%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGE-DFNLALPIEKIACGAYEGLKLTSQAFTTS----S 60
MGNCID P +KI+ + GE +F + P+EKI CG Y G KL A S +
Sbjct: 31 MGNCIDVLLHPPEEKIRVLIFNGGEKEFIASTPVEKITCGPYNGFKLVHHAQPYSPLAPN 90
Query: 61 AVLEVGRGAPPLPVRVD------DAILKPADLCKLRKATIVVSKEQLELLLRNSKKFGSK 120
LE G +P++ + D K RK IVV+KEQLELLLR++KKF S
Sbjct: 91 TRLEPGEVYYLVPLQPQPHHPSVTSRTANHDTGKRRKVKIVVTKEQLELLLRSTKKFQSS 150
Query: 121 GIAVQFSDTFQFD-EPCPRWRPALPTIPEVHNF 142
IA Q + Q D E C +W+P+L TI EVH+F
Sbjct: 151 VIAGQILGSSQVDVEGCRKWQPSLATIHEVHSF 183
BLAST of Lcy04g019630 vs. ExPASy TrEMBL
Match:
B9HD50 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 3.0e-14
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGE-DFNLALPIEKIACGAYEGLKLTSQAF----TTSS 60
MGNCID + ++ K + GE +F + ++KI G Y G L A
Sbjct: 1 MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60
Query: 61 AVLEVG---RGAPPL--PVRVD-DAILKPADLCKLRKATIVVSKEQLELLLRNSKKFGSK 120
LE G P L P R++ + L + C RK IVV+++QLELLLRNSK+F SK
Sbjct: 61 TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120
Query: 121 GIAVQFSDTFQFDEPCPRWRPALPTIPEVHNF 142
GIAV+FS++F+ E +WRP+L TIPEV F
Sbjct: 121 GIAVRFSESFKEGE--RKWRPSLVTIPEVQKF 150
BLAST of Lcy04g019630 vs. NCBI nr
Match:
KAG6603830.1 (hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 100/144 (69.44%), Postives = 114/144 (79.17%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGEDFNLALPIEKIACGAYEGLKLTSQAFTTSSAVLEV 60
MGNCI+ +HF PLQK+KD +CCEGED +LALPIEKIA GAY TTSSAVLEV
Sbjct: 1 MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIASGAY----------TTSSAVLEV 60
Query: 61 GRGAPPLPVRV--DDAILKPADLCKLRK-ATIVVSKEQLELLLRNSKKFGSKGIAVQFSD 120
RGAPPLPV + DDA+ KP LCKL K TIVVSK+QLEL+LRNS+KF SKGIAVQFSD
Sbjct: 61 DRGAPPLPVSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSD 120
Query: 121 TFQFDEPCPRWRPALPTIPEVHNF 142
+F+ D+ CPRW PALPTI EVHN+
Sbjct: 121 SFEVDDRCPRWCPALPTILEVHNY 134
BLAST of Lcy04g019630 vs. NCBI nr
Match:
KAE8647639.1 (hypothetical protein Csa_004428 [Cucumis sativus])
HSP 1 Score: 191.0 bits (484), Expect = 6.8e-45
Identity = 97/139 (69.78%), Postives = 108/139 (77.70%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGEDFNLALPIEKIACGAYEGLKLTSQAFTTSSAV--L 60
MGNCI+ HF PLQKIK F+CCE ED NLALPIE IA +QAFTTSSAV
Sbjct: 1 MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAA-------CKNQAFTTSSAVAEA 60
Query: 61 EVGRGAPPLPVRVDDAILKPADLCKLRKATIVVSKEQLELLLRNSKKFGSKGIAVQFSDT 120
EV G PPLPVR+D +I+KPADLCKL K TIVVSK+QLEL+LR SK FGSKGIAVQFSD+
Sbjct: 61 EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120
Query: 121 FQFDEPCPRWRPALPTIPE 138
F+ D+ CPRW PALPTIPE
Sbjct: 121 FKVDDGCPRWHPALPTIPE 132
BLAST of Lcy04g019630 vs. NCBI nr
Match:
KAA0025575.1 (hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK12450.1 hypothetical protein E5676_scaffold255G00250 [Cucumis melo var. makuwa])
HSP 1 Score: 189.1 bits (479), Expect = 2.6e-44
Identity = 96/141 (68.09%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGEDFNLALPIEKIACGAYEGLKLTSQAFTTSSAVLEV 60
MGNCI+ HF PLQKIK F+CCE E +L LPI +A AY K SQAFTTSSAV EV
Sbjct: 1 MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVA--AYGDCK--SQAFTTSSAVAEV 60
Query: 61 GRGAPPLPVRVDDAILKPADLCKLRKATIVVSKEQLELLLRNSKKFGSKGIAVQFSDTFQ 120
PPLPVR+D +I+KPAD KL KATIVVSK+QLEL+LR SK FGSKGIAVQFSD F+
Sbjct: 61 QHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFK 120
Query: 121 FDEPCPRWRPALPTIPEVHNF 142
D+ CPRW PALPTIPEV N+
Sbjct: 121 VDDGCPRWHPALPTIPEVRNY 137
BLAST of Lcy04g019630 vs. NCBI nr
Match:
KAG6594706.1 (hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 139.0 bits (349), Expect = 3.1e-29
Identity = 82/145 (56.55%), Postives = 92/145 (63.45%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGEDFNLALPIEKIACGAYEGLKLTSQAFTTSSAVLEV 60
MGNCI H ++LA+P+EKIA GLKLT SAVLEV
Sbjct: 1 MGNCISSPHL----------------YDLAVPVEKIA-----GLKLT-------SAVLEV 60
Query: 61 GRGAPPLPVRV----DDAILKPADLCKLRKATIVVSKEQLELLLRNSKKFGSKGIAVQFS 120
GRGA P V DD I KPA LCKL KATIVVSKEQLE LL NS++FGS+GIAVQFS
Sbjct: 61 GRGAATPPAHVLIDDDDDITKPAALCKLPKATIVVSKEQLEFLLTNSQQFGSQGIAVQFS 117
Query: 121 DTFQFDEPCPRWRPALPTIPEVHNF 142
D+F+FD C RW P LPTI EVHN+
Sbjct: 121 DSFKFDRSCSRWCPVLPTILEVHNY 117
BLAST of Lcy04g019630 vs. NCBI nr
Match:
KAB1221694.1 (hypothetical protein CJ030_MR2G006267 [Morella rubra] >KAB1221701.1 hypothetical protein CJ030_MR2G006274 [Morella rubra])
HSP 1 Score: 92.8 bits (229), Expect = 2.5e-15
Identity = 60/157 (38.22%), Postives = 80/157 (50.96%), Query Frame = 0
Query: 1 MGNCIDKSHFLPLQKIKDFVCCEGE-DFNLALPIEKIACGAYEGLKLTSQAFTTSSAV-- 60
MGNC D +KI+ V EGE +F+ P+EKI CG Y G KL + S +
Sbjct: 1 MGNCADVMLRPTEEKIRVLVFNEGEKEFSARTPVEKITCGPYSGFKLVHHSQPDSPLLPD 60
Query: 61 -------------LEVGRGAPPLPVRVDDAILKPADLCKLRKATIVVSKEQLELLLRNSK 120
L+ PP+P R + + K +K IVV+K QLELLLR++
Sbjct: 61 ARLQPGELYYLVPLQAQPHHPPIPSRTAN-----QETGKQKKVKIVVTKGQLELLLRSTD 120
Query: 121 KFGSKGIAVQFSDTFQFDEPCPRWRPALPTIPEVHNF 142
KF SK IA+ +FQ E +WRP+L IPEVH+F
Sbjct: 121 KFKSKDIAIHCLGSFQVGEGRRKWRPSLTMIPEVHSF 152
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KHP3 | 6.0e-47 | 69.23 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1 | [more] |
A0A5D3CLY8 | 1.2e-44 | 68.09 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6A1W907 | 1.2e-15 | 38.22 | Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1 | [more] |
A0A5N6Q7Y4 | 1.6e-15 | 41.83 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000047 PE=4 SV=1 | [more] |
B9HD50 | 3.0e-14 | 40.79 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
KAG6603830.1 | 1.6e-46 | 69.44 | hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAE8647639.1 | 6.8e-45 | 69.78 | hypothetical protein Csa_004428 [Cucumis sativus] | [more] |
KAA0025575.1 | 2.6e-44 | 68.09 | hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK1245... | [more] |
KAG6594706.1 | 3.1e-29 | 56.55 | hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAB1221694.1 | 2.5e-15 | 38.22 | hypothetical protein CJ030_MR2G006267 [Morella rubra] >KAB1221701.1 hypothetical... | [more] |
Match Name | E-value | Identity | Description | |