Lcy04g019250 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g019250
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribosomal protein L11
Location	Chr04: 50967045 .. 50967931 (-)
RNA-Seq Expression	Lcy04g019250
Synteny	Lcy04g019250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGAATCGACTCCACGGGGAAAAGAAGTTCCGGCGAACAGCTATGGCCACCTTGAAAGAGATCCTAACCAGGCGACCCGTCGCTGCCACCATCAGGCTCACCGTGCCTGCCGGCGGAGCTCGCCCAGCGCCACCGGTGGGGCCGGCGCTCGGTCAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGACTTCAATGCCCGGACTCAAAAGTACAAACCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTTGAGTTCACCGTCAAGTCGCCGTCGGTCACTTGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGCAGCAGCCGCCCAGGCCATGTGGTAGCCTCCACGCTCTCCCTCAAGCACGTTTACGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCTATTTGTAAGTCCATTATCGGCACTGCCAACAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTGATTTAATCCCTAATGTTCTAGGGTTTTTCTCCCATTGTTCTCCAGTATCTCGATTCAAATTGAGTGTTTTTTTTCTGTGATCTCACTCTCCTTAATGTGAATTAGTGTTACTCTGTATGCTAAGTCGGCAATCTAATCTGCTGACATGTTGAGTTTCTTCTAAATACGATAGAAGTTGAATCAATTCCAACGATTTACTTCTGAATTTCAAGGAAAGGGGGCTAGGGTAATAGCCAAATGTAGCCTTATCTCTTGAAAGCAAAGTTAATTTTGATCATGAGAGATACGATTTTGCTATGGGACTATAGCCAATTTGTAAGACGTGAACTGGTTGCATTTTGATCAATGAATGTATTGCCTTTGCTTGCTTTAGCCGG

mRNA sequence

CCTGAATCGACTCCACGGGGAAAAGAAGTTCCGGCGAACAGCTATGGCCACCTTGAAAGAGATCCTAACCAGGCGACCCGTCGCTGCCACCATCAGGCTCACCGTGCCTGCCGGCGGAGCTCGCCCAGCGCCACCGGTGGGGCCGGCGCTCGGTCAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGACTTCAATGCCCGGACTCAAAAGTACAAACCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTTGAGTTCACCGTCAAGTCGCCGTCGGTCACTTGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGCAGCAGCCGCCCAGGCCATGTGGTAGCCTCCACGCTCTCCCTCAAGCACGTTTACGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCTATTTGTAAGTCCATTATCGGCACTGCCAACAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTGATTTAATCCCTAATGTTCTAGGGTTTTTCTCCCATTGTTCTCCAGTATCTCGATTCAAATTGAGTGTTTTTTTTCTGTGATCTCACTCTCCTTAATGTGAATTAGTGTTACTCTGTATGCTAAGTCGGCAATCTAATCTGCTGACATGTTGAGTTTCTTCTAAATACGATAGAAGTTGAATCAATTCCAACGATTTACTTCTGAATTTCAAGGAAAGGGGGCTAGGGTAATAGCCAAATGTAGCCTTATCTCTTGAAAGCAAAGTTAATTTTGATCATGAGAGATACGATTTTGCTATGGGACTATAGCCAATTTGTAAGACGTGAACTGGTTGCATTTTGATCAATGAATGTATTGCCTTTGCTTGCTTTAGCCGG

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATCCTAACCAGGCGACCCGTCGCTGCCACCATCAGGCTCACCGTGCCTGCCGGCGGAGCTCGCCCAGCGCCACCGGTGGGGCCGGCGCTCGGTCAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGACTTCAATGCCCGGACTCAAAAGTACAAACCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTTGAGTTCACCGTCAAGTCGCCGTCGGTCACTTGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGCAGCAGCCGCCCAGGCCATGTGGTAGCCTCCACGCTCTCCCTCAAGCACGTTTACGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCTATTTGTAAGTCCATTATCGGCACTGCCAACAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTGA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD

Homology

[Close]

BLAST of Lcy04g019250 vs. ExPASy Swiss-Prot
Match: Q9UTK2 (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 7.3e-35
Identity = 71/135 (52.59%), Postives = 91/135 (67.41%), Query Frame = 0


Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P+TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   LSLKH+YEIAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVV 152
           KS+IGTA SMG+KVV
Sbjct: 129 KSVIGTAKSMGVKVV 143

[Close]

BLAST of Lcy04g019250 vs. ExPASy Swiss-Prot
Match: Q9VFJ2 (39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster OX=7227 GN=mRpL11 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.2e-30
Identity = 61/155 (39.35%), Postives = 98/155 (63.23%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           + +LK+ + R    + ++  +PAG A   PP+GP LGQ  +N+ AFCKDFNA+T + K  
Sbjct: 8   LKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEG 67

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
            P+   I+   D +++  +  P  T++LK+AAGI+ G+  PG  VA  ++LKH+YEIA +
Sbjct: 68  VPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKHLYEIAAI 127

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           K  DP    + ++ +C+ +I  A + GIKVV+E+D
Sbjct: 128 KIQDPPNVLLTMQQMCEMLISIARTCGIKVVREID 162

[Close]

BLAST of Lcy04g019250 vs. ExPASy Swiss-Prot
Match: Q9Y3B7 (39S ribosomal protein L11, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL11 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 69/149 (46.31%), Postives = 95/149 (63.76%), Query Frame = 0


Query: 8   LTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTI 67
           L +  V   IR  V AG A P PP+GP LGQ  +++  FCK+FN RT+  K   P+   I
Sbjct: 11  LRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKI 70

Query: 68  TAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDP-- 127
               D TFE  +  P+V+++LK AAGIE G+ + G  VA  ++LKHVYEIA++K  D   
Sbjct: 71  LVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAF 130

Query: 128 YCQYMPLESICKSIIGTANSMGIKVVKEL 155
             Q +PL S+ +SIIG+A S+GI+VVK+L
Sbjct: 131 ALQDVPLSSVVRSIIGSARSLGIRVVKDL 159

[Close]

BLAST of Lcy04g019250 vs. ExPASy Swiss-Prot
Match: Q07KJ7 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=316055 GN=rplK PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 66/140 (47.14%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK+FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA I+SGS  PG  VA  +S   V EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + + G+A SMG++V
Sbjct: 123 SIESAMRMVEGSARSMGLQV 140

[Close]

BLAST of Lcy04g019250 vs. ExPASy Swiss-Prot
Match: Q2RQU9 (50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rplK PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-29
Identity = 65/142 (45.77%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQ  +P  P+ V ITA+
Sbjct: 3   KKIIGYIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAATQGLEPGMPIPVVITAY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYCQYM 130
            D TF +  K+P +T++LKKAAGI  GS+ PG   A T++++ V +IA+ K  D      
Sbjct: 63  GDRTFTYITKTPPMTYFLKKAAGIGKGSTTPGKGSAGTVTMEQVRDIAEKKMPD--LNSP 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            +E+  + ++G+A SMG++VV+
Sbjct: 123 TIEAAVQMVVGSARSMGLQVVE 142

[Close]

BLAST of Lcy04g019250 vs. ExPASy TrEMBL
Match: A0A6J1BU21 (54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005691 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 152/155 (98.06%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTLSLKH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Lcy04g019250 vs. ExPASy TrEMBL
Match: A0A6J1IPM9 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111477675 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.5e-80
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL+LKH+Y+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Lcy04g019250 vs. ExPASy TrEMBL
Match: A0A6J1KUS1 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111497382 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGIESGSSRPGHVVASTLSLKH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANS GIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSTGIKVVKELD 155

[Close]

BLAST of Lcy04g019250 vs. ExPASy TrEMBL
Match: A0A6J1GG89 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111453660 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL++KH+Y+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Lcy04g019250 vs. ExPASy TrEMBL
Match: A0A5A7T9U7 (54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00710 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.8e-79
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]

BLAST of Lcy04g019250 vs. NCBI nr
Match: XP_022132985.1 (54S ribosomal protein L19, mitochondrial [Momordica charantia])

HSP 1 Score: 308.5 bits (789), Expect = 3.2e-80
Identity = 152/155 (98.06%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTLSLKH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Lcy04g019250 vs. NCBI nr
Match: XP_038901904.1 (54S ribosomal protein L19, mitochondrial [Benincasa hispida])

HSP 1 Score: 308.1 bits (788), Expect = 4.2e-80
Identity = 152/155 (98.06%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKEL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 155

[Close]

BLAST of Lcy04g019250 vs. NCBI nr
Match: KAG7034038.1 (mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.4 bits (786), Expect = 7.1e-80
Identity = 151/155 (97.42%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL++KH+Y+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Lcy04g019250 vs. NCBI nr
Match: XP_022977323.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 9.3e-80
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL+LKH+Y+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Lcy04g019250 vs. NCBI nr
Match: XP_031269209.1 (54S ribosomal protein L19, mitochondrial [Pistacia vera])

HSP 1 Score: 305.4 bits (781), Expect = 2.7e-79
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAG ARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGAARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKK AGIESGS RPGHVVASTLSLKH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKVAGIESGSGRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Lcy04g019250 vs. TAIR 10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11 )

HSP 1 Score: 274.2 bits (700), Expect = 6.2e-74
Identity = 131/154 (85.06%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  +TLS++HVYEIAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           Q+DP+CQYMPLESICKSIIGTANSMGIK+V++L+
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]

BLAST of Lcy04g019250 vs. TAIR 10
Match: AT1G32990.1 (plastid ribosomal protein l11 )

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-22
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +++  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]

BLAST of Lcy04g019250 vs. TAIR 10
Match: AT5G51610.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.8e-07
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +++  V +IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

The following BLAST results are available for this feature:

BLAST of Lcy04g019250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UTK2	7.3e-35	52.59	54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9VFJ2	9.2e-30	39.35	39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster OX=7227 GN=m...	[more]
Q9Y3B7	1.2e-29	46.31	39S ribosomal protein L11, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL11 PE=1 ...	[more]
Q07KJ7	2.0e-29	47.14	50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=31605...	[more]
Q2RQU9	2.7e-29	45.77	50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1....	[more]

BLAST of Lcy04g019250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BU21	1.5e-80	98.06	54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1IPM9	4.5e-80	97.42	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KUS1	2.9e-79	97.42	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GG89	2.9e-79	96.13	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7T9U7	3.8e-79	96.13	54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Lcy04g019250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132985.1	3.2e-80	98.06	54S ribosomal protein L19, mitochondrial [Momordica charantia]	[more]
XP_038901904.1	4.2e-80	98.06	54S ribosomal protein L19, mitochondrial [Benincasa hispida]	[more]
KAG7034038.1	7.1e-80	97.42	mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022977323.1	9.3e-80	97.42	54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima]	[more]
XP_031269209.1	2.7e-79	97.42	54S ribosomal protein L19, mitochondrial [Pistacia vera]	[more]

BLAST of Lcy04g019250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35490.1	6.2e-74	85.06	mitochondrial ribosomal protein L11	[more]
AT1G32990.1	2.5e-22	42.86	plastid ribosomal protein l11	[more]
AT5G51610.1	3.8e-07	34.18	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 17..151 e-value: 1.3E-71 score: 253.9
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..154
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 13..152 score: 24.857338
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 17..150 e-value: 1.18528E-65 score: 194.592
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 11..77 e-value: 8.1E-27 score: 94.7
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 13..80
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 80..150 e-value: 4.0E-29 score: 101.0
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 78..151 e-value: 7.0E-30 score: 105.0
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..151
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAM	TIGR01632	TIGR01632	coord: 13..152 e-value: 5.9E-56 score: 186.3
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 13..75 e-value: 1.7E-24 score: 85.4
None	No IPR available	PANTHER	PTHR11661:SF22	SUBFAMILY NOT NAMED	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g019250.1	Lcy04g019250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome