Lcy04g017660 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g017660
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 49675780 .. 49676460 (-)
RNA-Seq ExpressionLcy04g017660
SyntenyLcy04g017660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTATGTTCAGCAACTCAGGTGTGTATTTTATTTTCCTTTTTTTTAATAAATATTTTATTTTCCCTTTTTTTAATAAATATTTTGTTTTCCCTTTGTGAAAGTATAGATATCAAGTCAAATTTACCTAATTCATACTCTCGTCAATAGGAGATTGTAGATTAAATAGTGATTTATATGGATTTAGTAAACTAAACTCGTCATACTACTTGACATTTCAAGTCATTTTATTGCACAGATGAATTGAACTTCGTCAACAAAAACATAGTTCAACTGACATAAAATTATACTGACAATCACGAGGTCTAGGGAATGAATTGAACTTCAACGTTACATGCAAAAAGAAGCAAACAATTTAAAAACACGTAACACAAAAGAATCTGACAAAAATATAAAAAATAGGAATAAAGATTCTCATCCCTAATCTCACCGGTCACCCCACTTCAACCATCATTCAGAGAGTTAACAAAGCTTCAAGGAAAAACGCGAGCGGCGGAGGACGGTGGAGGAGAATTCCGGTCGACGGAACAAAGGCAGAAGAGGAAGAACAGCTTTTTCAGAACACGGCGGAGGACTTGCCCGCGTTTCGGAATCCAGCGAGGAGCTGCAGACGCGGCGGCGGCGGCGGCAGCCATTTTGACGTCCAACGGCGGAGGAGAGAGATTTGGGTAATTTGA

mRNA sequence

ATGGCAGCTATGTTCAGCAACTCAGGAATAAAGATTCTCATCCCTAATCTCACCGGTCACCCCACTTCAACCATCATTCAGAGAGTTAACAAAGCTTCAAGGAAAAACGCGAGCGGCGGAGGACGGTGGAGGAGAATTCCGGTCGACGGAACAAAGGCAGAAGAGGAAGAACAGCTTTTTCAGAACACGGCGGAGGACTTGCCCGCGTTTCGGAATCCAGCGAGGAGCTGCAGACGCGGCGGCGGCGGCGGCAGCCATTTTGACGTCCAACGGCGGAGGAGAGAGATTTGGGTAATTTGA

Coding sequence (CDS)

ATGGCAGCTATGTTCAGCAACTCAGGAATAAAGATTCTCATCCCTAATCTCACCGGTCACCCCACTTCAACCATCATTCAGAGAGTTAACAAAGCTTCAAGGAAAAACGCGAGCGGCGGAGGACGGTGGAGGAGAATTCCGGTCGACGGAACAAAGGCAGAAGAGGAAGAACAGCTTTTTCAGAACACGGCGGAGGACTTGCCCGCGTTTCGGAATCCAGCGAGGAGCTGCAGACGCGGCGGCGGCGGCGGCAGCCATTTTGACGTCCAACGGCGGAGGAGAGAGATTTGGGTAATTTGA

Protein sequence

MAAMFSNSGIKILIPNLTGHPTSTIIQRVNKASRKNASGGGRWRRIPVDGTKAEEEEQLFQNTAEDLPAFRNPARSCRRGGGGGSHFDVQRRRREIWVI
Homology
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BLAST of Lcy04g017660 vs. NCBI nr
Match: KAE8647590.1 (hypothetical protein Csa_023535, partial [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 9.7e-06
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 33  SRKNASGGGRWRRIPVDGTKAEEEEQLFQNTAEDLPAFRNPARSCRRGGGGGSHFD 89
           SRKNA G  R RR P+DGT   EEEQLF+NTAEDL  FRNPARS   G   G H D
Sbjct: 73  SRKNARGDRR-RRTPIDGTNT-EEEQLFKNTAEDLAPFRNPARS--SGNRDGGHLD 124

The following BLAST results are available for this feature:
BLAST of Lcy04g017660 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g017660 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g017660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647590.19.7e-0664.29hypothetical protein Csa_023535, partial [Cucumis sativus][more]
BLAST of Lcy04g017660 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g017660.1Lcy04g017660.1mRNA