Lcy04g017520 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g017520
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	AP complex subunit sigma
Location	Chr04: 49580355 .. 49582140 (+)
RNA-Seq Expression	Lcy04g017520
Synteny	Lcy04g017520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACGGGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGTCAAGTTCTATGATTTTCAGGTCCCTTTCTGGGAATTTTGTGCCGATTTTTCCTATACTTTTTGCGGCATTTCTATTAAATGATCTATCTGACGATGACGAATTCTTGAATTCAGCCCGTAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGAGGTTGGCAATTCTGTCTTTTGATTATAATTCTATGAATTACTAAAATGATCTGTAGTATTTCCACTATCGGAACTATGATTTCTGTAACCTATATTTCAATTCTGATTTCCTTTTGTTTCCCGGTTTGGTACAGTACTTTGCAGTCGAGCTGAGAATGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTCGGTCCGGTAATTTTTCGTTGATCGCATGATTCCTTGTCCTAAAATTTCCTTCTAGTAATGTATGTAGGATATATTGCATTGATGATTTCTGGAGAAGCTAGATATTTGTCGAAAATGAATATTGGTTGGCCTTTGTTCAACCAATTGTAGGGCATTTACAGAGTGGCCTAGGTGATTAGTGACCTGGTTAATGGCTAATTCCACATAAATTTAGTTTTATGTGGCTTGTTGTACGGAAATTTCTTTAACTTTGCCTTCAAATGAACCGTGGGGATTGTCCTTTTATTTTCTGCTGCAGGACTCTCGTCTTGTATACAAACACTTCGCAACCCTTTACTTCGTGTTTGTATTTAACAGTTCTGAGAATGAGCTTGCAATGCTTGACCTGATACAAGGTACTTCCGATATCTATGTCATGGGTTAGTGACCACTGGATCAATTTCGATATAAATACTATTTACTAGCTTGCACAGGACTTTAGTACTCCTTGGTGCCTGAAGTTTTAAACCGGATGGTATCATGTTATGTTTAGACATTCTTTAGTTCATAATTACTAGTAAGTGGTGAGAAGCAATCAGTACAAAGAATGAGAATTGTGTGGGCTTAGAATTCTCTTACTGAGAAGGCCTGAATAATTGCATAACTTGAAGAGAATTGAACCAACTAGGATAGAATGTTAAATCATTAAAAACTTCTAATTTCATAATCCACGCATTTAAAGTGGAATCCACATGGATGAATCAATCGGTCATATATTTGAATGTATCTGAATGTAGATCTTCGGAAGTTTGTTGTTTTAGGTATGTAAGTACAATGATATGATTAGTTTTCTTGTCTTGTATTATTCCCTTGATTGATGGCATAATTAGGTTCTTCCATTTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTGGTGTTCAACTACAGTAAGGTTGGCTCTCTCTCTCTCACACACAATACACACATGACCATCTCAAGTTTGTTTTTGAAATGGCCCAATGCACTCTGATGATGACATGACTATTATTTGGTTGGAAGGAATATATGACTGCCAATGCATTCTTCTGAACATTTAGATTGGAAATAATACGAATAAAATTTTAATGCAGATGGATACTATTTTGGATGAAATCATTTCTGGTGGCCAAGTGTTAGAGACTAGTTCTTCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTGCTCTCTCTCTCCCTCTCTCTATCTCATCTAAGAACTGTTGATTGTTCTGTGTGCTTTAAGTATTGATACATGTTGACGTTGTGGCATTGGCATTGCAGGTTACAAACAGCTTCAAATTCTATCAACTTTGTCTCCAAAACGGTTTCTGGTTGGCGGGGTTGA

mRNA sequence

ATGATACGGGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGTCAAGTTCTATGATTTTCAGCCCGTAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGAGTACTTTGCAGTCGAGCTGAGAATGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCAACCCTTTACTTCGTGTTTGTATTTAACAGTTCTGAGAATGAGCTTGCAATGCTTGACCTGATACAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTGGTGTTCAACTACAGTAAGATGGATACTATTTTGGATGAAATCATTTCTGGTGGCCAAGTGTTAGAGACTAGTTCTTCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTTACAAACAGCTTCAAATTCTATCAACTTTGTCTCCAAAACGGTTTCTGGTTGGCGGGGTTGA

Coding sequence (CDS)

ATGATACGGGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGTCAAGTTCTATGATTTTCAGCCCGTAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGAGTACTTTGCAGTCGAGCTGAGAATGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCAACCCTTTACTTCGTGTTTGTATTTAACAGTTCTGAGAATGAGCTTGCAATGCTTGACCTGATACAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTGGTGTTCAACTACAGTAAGATGGATACTATTTTGGATGAAATCATTTCTGGTGGCCAAGTGTTAGAGACTAGTTCTTCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTTACAAACAGCTTCAAATTCTATCAACTTTGTCTCCAAAACGGTTTCTGGTTGGCGGGGTTGA

Protein sequence

MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILDEIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG

Homology

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BLAST of Lcy04g017520 vs. ExPASy Swiss-Prot
Match: Q8VZ37 (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 9.7e-70
Identity = 131/165 (79.39%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV++MNTQGKPR  KFYD+ PVEKQQELIR V+ VLCSR ENVSNF+E ES+FGPDS
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKH+ATLYFV VF+ SENELAMLDLIQV VETLDKCF NVCELD+VFNYSKM  +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EI+ GGQVLETSS+EV+KAVEEISKL+ ASNSI+ V K+VSGWRG
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. ExPASy Swiss-Prot
Match: Q1JQA3 (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.8e-39
Identity = 77/155 (49.68%), Postives = 114/155 (73.55%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR V+FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTIL 120
            +L+Y+H+ATLYFVF  +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+  IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVVKAVEEISKLQTASNSIN 155
            E++ GG VLET+ +E+V  +E  ++L+ +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]

BLAST of Lcy04g017520 vs. ExPASy Swiss-Prot
Match: P59780 (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.8e-39
Identity = 77/155 (49.68%), Postives = 114/155 (73.55%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR V+FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTIL 120
            +L+Y+H+ATLYFVF  +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+  IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVVKAVEEISKLQTASNSIN 155
            E++ GG VLET+ +E+V  +E  ++L+ +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]

BLAST of Lcy04g017520 vs. ExPASy Swiss-Prot
Match: Q8BSZ2 (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.8e-39
Identity = 77/155 (49.68%), Postives = 114/155 (73.55%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR V+FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTIL 120
            +L+Y+H+ATLYFVF  +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+  IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVVKAVEEISKLQTASNSIN 155
            E++ GG VLET+ +E+V  +E  ++L+ +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]

BLAST of Lcy04g017520 vs. ExPASy Swiss-Prot
Match: Q5RDP9 (AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.8e-39
Identity = 77/155 (49.68%), Postives = 114/155 (73.55%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR V+FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTIL 120
            +L+Y+H+ATLYFVF  +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+  IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVVKAVEEISKLQTASNSIN 155
            E++ GG VLET+ +E+V  +E  ++L+ +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]

BLAST of Lcy04g017520 vs. ExPASy TrEMBL
Match: A0A6J1IUE1 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.8e-80
Identity = 157/165 (95.15%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRF KFYDFQPVEKQQELIRSV+GVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           R+VYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY+KM +ILD
Sbjct: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EVVKAVEEISKL+TASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. ExPASy TrEMBL
Match: A0A6J1GFL2 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 156/165 (94.55%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRF KFYDFQPVEKQQELIRSV+GVLCSRAEN+SNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVF+Y+KM +ILD
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFHYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EVVKAVEEISKL+TASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. ExPASy TrEMBL
Match: A0A1S3BT37 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.0e-79
Identity = 154/165 (93.33%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRF KFYDFQP+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKM +ILD
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHSILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEV+KAVEEISKL+TASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. ExPASy TrEMBL
Match: A0A6J1E2P6 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111025475 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.7e-77
Identity = 154/165 (93.33%), Postives = 159/165 (96.36%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRF KFYDFQPVEKQQ+LIRSVYGVL SRAENVSNFVEAESIFG DS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQDLIRSVYGVLSSRAENVSNFVEAESIFGXDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKHFATLYFVFVFN SENELAMLDLIQVFVETLDKCFKNVCELDLV+NYSKM TILD
Sbjct: 61  RLVYKHFATLYFVFVFNGSENELAMLDLIQVFVETLDKCFKNVCELDLVYNYSKMHTILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEV+KAVEEISKL+T SN+INFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETNSNAINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. ExPASy TrEMBL
Match: A0A5N6QKN8 (AP complex subunit sigma OS=Carpinus fangiana OX=176857 GN=FH972_004308 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+V+VMNTQGKPR  KFYDFQPVEKQQELIRSV+GVLCSRAENVSNF+EA+SIFGPDS
Sbjct: 1   MIRSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCSRAENVSNFLEADSIFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKH+ATLYFV VF+SSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY KM TI+D
Sbjct: 61  RLVYKHYATLYFVLVFDSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYCKMHTIID 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWR 165
           EII GGQVLETSS+EV+KA+EEISKL+TASNSI+ V K+VSGWR
Sbjct: 121 EIIFGGQVLETSSTEVMKAIEEISKLETASNSISLVPKSVSGWR 164

[Close]

BLAST of Lcy04g017520 vs. NCBI nr
Match: KAG6603975.1 (AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034147.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.1 bits (788), Expect = 4.4e-80
Identity = 158/165 (95.76%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRF KFYDFQPVEKQQELIRSV+GVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY+KM +ILD
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EVVKAVEEISKL+TASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. NCBI nr
Match: XP_022978569.1 (AP-3 complex subunit sigma-like [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 9.9e-80
Identity = 157/165 (95.15%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRF KFYDFQPVEKQQELIRSV+GVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           R+VYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY+KM +ILD
Sbjct: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EVVKAVEEISKL+TASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. NCBI nr
Match: XP_038893159.1 (AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893162.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893163.1 AP-3 complex subunit sigma [Benincasa hispida])

HSP 1 Score: 305.8 bits (782), Expect = 2.2e-79
Identity = 158/165 (95.76%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRF KFY+FQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYNFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKM TILD
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSS V+KAVEEISKL+TASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSGVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. NCBI nr
Match: XP_022950395.1 (AP-3 complex subunit sigma-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 3.8e-79
Identity = 156/165 (94.55%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRF KFYDFQPVEKQQELIRSV+GVLCSRAEN+SNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVF+Y+KM +ILD
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFHYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EVVKAVEEISKL+TASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. NCBI nr
Match: XP_008452384.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452387.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452388.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452389.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452390.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452391.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_016901330.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 154/165 (93.33%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRF KFYDFQP+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKM +ILD
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHSILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEV+KAVEEISKL+TASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 264.2 bits (674), Expect = 6.9e-71
Identity = 131/165 (79.39%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV++MNTQGKPR  KFYD+ PVEKQQELIR V+ VLCSR ENVSNF+E ES+FGPDS
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           RLVYKH+ATLYFV VF+ SENELAMLDLIQV VETLDKCF NVCELD+VFNYSKM  +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQTASNSINFVSKTVSGWRG 166
           EI+ GGQVLETSS+EV+KAVEEISKL+ ASNSI+ V K+VSGWRG
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRG 165

[Close]

BLAST of Lcy04g017520 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-22
Identity = 56/147 (38.10%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR +++ N QGK R  K+Y      ++ ++   V+ ++ +R    +NFVE  +      
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRT-----H 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           +++Y+ +A L+F    + ++NELA L+ I +FVE LD  F NVCELDLVFN+ K+  ILD
Sbjct: 61  KVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKLQ 148
           E I  G++ ETS   +++ + E+ KLQ
Sbjct: 121 EFILAGELQETSKRAIIERMSELEKLQ 142

[Close]

BLAST of Lcy04g017520 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-21
Identity = 54/162 (33.33%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI  V++++ QGK R  K+Y     +++ ++IR + GV+ +R   + NF+E         
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGY----- 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           ++VYK +A+LYF    + ++NEL +L++I  +VE LD+ F +VCELDL+FN+ K   ILD
Sbjct: 61  KVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKL-QTASNSINFVSKTVS 162
           E++  G++ E+S   V + +    +L + A    + +S  ++
Sbjct: 121 ELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

[Close]

BLAST of Lcy04g017520 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-21
Identity = 55/162 (33.95%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI  V++++ QGK R  K+Y     +++ ++IR + GV+ +R   + NFVE         
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGY----- 60

Query: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILD 120
           ++VYK +A+LYF    +  +NEL +L++I  +VE LD+ F +VCELDL+FN+ K   ILD
Sbjct: 61  KVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILD 120

Query: 121 EIISGGQVLETSSSEVVKAVEEISKL-QTASNSINFVSKTVS 162
           E++  G++ E+S   V + +    +L + A    + +S  ++
Sbjct: 121 ELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

[Close]

BLAST of Lcy04g017520 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-19
Identity = 46/144 (31.94%), Postives = 91/144 (63.19%), Query Frame = 0


Query: 2   IRAVIVMNTQGKPRFVKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDSR 61
           IR ++++N QG+ R  ++Y++  +E+++ L   +     +R +   +FVE  +      +
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNY-----K 62

Query: 62  LVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMDTILDE 121
           +VY+ +A+L+F+   +  ENELA+L+ I + VET+DK F NVCELD++F+  K   +L+E
Sbjct: 63  IVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEE 122

Query: 122 IISGGQVLETSSSEVVKAVEEISK 146
           ++  G ++ETS + ++  ++ + K
Sbjct: 123 MVMNGCIVETSKANILSPIQLMDK 141

The following BLAST results are available for this feature:

BLAST of Lcy04g017520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ37	9.7e-70	79.39	AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=...	[more]
Q1JQA3	8.8e-39	49.68	AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1	[more]
P59780	8.8e-39	49.68	AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1	[more]
Q8BSZ2	8.8e-39	49.68	AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1	[more]
Q5RDP9	8.8e-39	49.68	AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1	[more]

BLAST of Lcy04g017520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IUE1	4.8e-80	95.15	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1	[more]
A0A6J1GFL2	1.8e-79	94.55	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1	[more]
A0A1S3BT37	9.0e-79	93.33	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1	[more]
A0A6J1E2P6	1.7e-77	93.33	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111025475 PE=3 SV=...	[more]
A0A5N6QKN8	1.3e-72	86.59	AP complex subunit sigma OS=Carpinus fangiana OX=176857 GN=FH972_004308 PE=3 SV=...	[more]

BLAST of Lcy04g017520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603975.1	4.4e-80	95.76	AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022978569.1	9.9e-80	95.15	AP-3 complex subunit sigma-like [Cucurbita maxima]	[more]
XP_038893159.1	2.2e-79	95.76	AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subu...	[more]
XP_022950395.1	3.8e-79	94.55	AP-3 complex subunit sigma-like isoform X2 [Cucurbita moschata]	[more]
XP_008452384.1	1.9e-78	93.33	PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: ...	[more]

BLAST of Lcy04g017520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50860.1	6.9e-71	79.39	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	2.0e-22	38.10	SNARE-like superfamily protein	[more]
AT2G17380.1	2.2e-21	33.33	associated protein 19	[more]
AT4G35410.2	2.2e-21	33.95	Clathrin adaptor complex small chain family protein	[more]
AT2G19790.1	1.6e-19	31.94	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..157 e-value: 1.3E-55 score: 185.4
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..157
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..146 e-value: 7.8E-49 score: 165.3
None	No IPR available	GENE3D	3.30.450.60		coord: 1..160 e-value: 2.6E-59 score: 201.5
None	No IPR available	PANTHER	PTHR11753:SF42	AP COMPLEX SUBUNIT SIGMA	coord: 1..157
IPR000804	Clathrin adaptor complex, small chain	PROSITE	PS00989	CLAT_ADAPTOR_S	coord: 62..72
IPR027155	AP-3 complex subunit sigma	CDD	cd14834	AP3_sigma	coord: 1..145 e-value: 6.10007E-86 score: 246.756
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g017520.1	Lcy04g017520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006896	Golgi to vacuole transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030123	AP-3 adaptor complex
cellular_component	GO:0030659	cytoplasmic vesicle membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030117	membrane coat