Lcy04g017070 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g017070
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 49217888 .. 49218268 (-)
RNA-Seq ExpressionLcy04g017070
SyntenyLcy04g017070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAGCCCACAGAAAGAATTCTGATAATAATTTCCATTTGTTGATCTGTTCCGTAAAAACCATGTCGTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTTATGAAAAAGAAGGCCGAGGAGAAACTTCAGAGGATGGAGCAGGAGAGAGCTGGCAGAAGGGAAGACTCGGTCAAACCTCCAAAAACCGCCCATCACGGCGCCGCCGTTGCCGGAAAAACCAGTAAAAAAGTCCATCCCGGTACCATATTTGGGGTTCCGGCGAGCTCTAATTCGTGAAACAGGGCTCTCTGGCTTTCACTTTCTGAATTGAAAATCCAAGCCAGAGTCGCAGTCTTTATTAGCTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTAAACT

mRNA sequence

GAAAAAGCCCACAGAAAGAATTCTGATAATAATTTCCATTTGTTGATCTGTTCCGTAAAAACCATGTCGTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTTATGAAAAAGAAGGCCGAGGAGAAACTTCAGAGGATGGAGCAGGAGAGAGCTGGCAGAAGGGAAGACTCGGTCAAACCTCCAAAAACCGCCCATCACGGCGCCGCCGTTGCCGGAAAAACCAGTAAAAAAGTCCATCCCGGTACCATATTTGGGGTTCCGGCGAGCTCTAATTCGTGAAACAGGGCTCTCTGGCTTTCACTTTCTGAATTGAAAATCCAAGCCAGAGTCGCAGTCTTTATTAGCTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTAAACT

Coding sequence (CDS)

ATGTCGTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTTATGAAAAAGAAGGCCGAGGAGAAACTTCAGAGGATGGAGCAGGAGAGAGCTGGCAGAAGGGAAGACTCGGTCAAACCTCCAAAAACCGCCCATCACGGCGCCGCCGTTGCCGGAAAAACCAGTAAAAAAGTCCATCCCGGTACCATATTTGGGGTTCCGGCGAGCTCTAATTCGTGA

Protein sequence

MSSMGASCARVYVMKKKAEEKLQRMEQERAGRREDSVKPPKTAHHGAAVAGKTSKKVHPGTIFGVPASSNS
Homology
BLAST of Lcy04g017070 vs. ExPASy TrEMBL
Match: A0A0A0KGB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERAGRREDSVKPPKTAHHGA-AVAGKTSKKVHP 60
          MSSMGASCARVYVMKKKAEEKLQRMEQER+GRREDSVKPPKT+HH A  +AGK+SKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFGVPASSNS 72
          GT+FG+ A+SNS
Sbjct: 61 GTLFGLQATSNS 72

BLAST of Lcy04g017070 vs. ExPASy TrEMBL
Match: A0A5A7T065 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002550 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.0e-23
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERAGRRED--SVKPPKTAHH-GAAVAGKTSKKV 60
          MSSMGASCARVYVMKKKAEEKLQRMEQER+GRRED  SVKPPKTAHH G  +AGK+SKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTIFGVPASSNS 72
          HPGT+FGVP +SNS
Sbjct: 61 HPGTVFGVPPTSNS 74

BLAST of Lcy04g017070 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERAGRREDSVKPPKTAHHGAAVAGKTSKKVHPG 60
          MSS+GASCA +YVM+K+ +EKL+RME+ER  + E SV+  K +  G+ +    SKKVHPG
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVS--GSTIG--RSKKVHPG 56

BLAST of Lcy04g017070 vs. ExPASy TrEMBL
Match: A0A2P5CW36 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.2e-04
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERAGRREDSVKPPKTAHHGAAVAGKT----SKK 60
          MSS+GASCA VYVM+K+ +EK++RME+ERA R E   +  K A  G +  G      SKK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGES--QDNKVAGSGRSGGGSNTLGRSKK 60

Query: 61 VHPGTIFGVPAS 69
          +HPG   G  ++
Sbjct: 61 IHPGNFPGAESN 70

BLAST of Lcy04g017070 vs. ExPASy TrEMBL
Match: A0A2P5BZF9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.2e-04
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERA--GRREDSVKPPKTAHHGAAVAGKTSKKVH 60
          MSS+GASCA VYVM+K+ +EK++RME+ERA  G  +D+         GA+     SKKVH
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGGSGGASNTFGRSKKVH 60

Query: 61 PGTIFGVPAS 69
          PG   G  ++
Sbjct: 61 PGKFPGAEST 70

BLAST of Lcy04g017070 vs. NCBI nr
Match: KGN48780.1 (hypothetical protein Csa_002943 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 6.3e-23
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERAGRREDSVKPPKTAHHGA-AVAGKTSKKVHP 60
          MSSMGASCARVYVMKKKAEEKLQRMEQER+GRREDSVKPPKT+HH A  +AGK+SKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFGVPASSNS 72
          GT+FG+ A+SNS
Sbjct: 61 GTLFGLQATSNS 72

BLAST of Lcy04g017070 vs. NCBI nr
Match: KAA0036273.1 (hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667.1 hypothetical protein E5676_scaffold255G002550 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 8.2e-23
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERAGRRED--SVKPPKTAHH-GAAVAGKTSKKV 60
          MSSMGASCARVYVMKKKAEEKLQRMEQER+GRRED  SVKPPKTAHH G  +AGK+SKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTIFGVPASSNS 72
          HPGT+FGVP +SNS
Sbjct: 61 HPGTVFGVPPTSNS 74

BLAST of Lcy04g017070 vs. NCBI nr
Match: KAG6594855.1 (hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERAGRREDSVKPPKTAHHGAAVAGKTSKKVHPG 60
          MSS+GASCARVYVMKKK EEKLQRMEQE+AGRRED VKP KTAHHG A AG T KKVHPG
Sbjct: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHHGGAFAGITCKKVHPG 60

Query: 61 TIFGVPASSNS 72
          T+  VPAS+ S
Sbjct: 61 TVISVPASNIS 71

BLAST of Lcy04g017070 vs. NCBI nr
Match: KAG6604014.1 (hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 5.5e-19
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERAGRREDSVKPPKTAHH--GAAVAGKTSKKVH 60
          MSSMGA+CARVYVM+KK EEKL+RMEQERAGR ED+VKPPK+AHH  G  +AGK  KKVH
Sbjct: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60

Query: 61 PGTIFGVPASSNS 72
          PG +F V A+SNS
Sbjct: 61 PGNVFAVSANSNS 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGB83.0e-2384.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1[more]
A0A5A7T0654.0e-2385.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9EUS91.4e-0453.33Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1[more]
A0A2P5CW369.2e-0447.22Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE... [more]
A0A2P5BZF99.2e-0447.14Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KGN48780.16.3e-2384.72hypothetical protein Csa_002943 [Cucumis sativus][more]
KAA0036273.18.2e-2385.14hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667... [more]
KAG6594855.12.9e-2080.28hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604014.15.5e-1973.97hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..41
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..65
NoneNo IPR availablePANTHERPTHR34950:SF2BNAC01G00560D PROTEINcoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g017070.1Lcy04g017070.1mRNA