Lcy04g015140 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g015140
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr04: 47479966 .. 47480139 (+)
RNA-Seq Expression	Lcy04g015140
Synteny	Lcy04g015140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTTTCAGAAGTAGCTTCTCCTTTCTAGCGGGAACTGTGCTCGGGATTTACGTGGCTCAAAATTACAACGTTCCCAACATCAGGAAGCTCGCCAATACTGGGCTTGTAATGGCCAAGCACATCGAAGAAAATTACAGGAAGCCAAAGAAGAGGGGGGATGATGATTGA

mRNA sequence

ATGGGCTTTTTCAGAAGTAGCTTCTCCTTTCTAGCGGGAACTGTGCTCGGGATTTACGTGGCTCAAAATTACAACGTTCCCAACATCAGGAAGCTCGCCAATACTGGGCTTGTAATGGCCAAGCACATCGAAGAAAATTACAGGAAGCCAAAGAAGAGGGGGGATGATGATTGA

Coding sequence (CDS)

ATGGGCTTTTTCAGAAGTAGCTTCTCCTTTCTAGCGGGAACTGTGCTCGGGATTTACGTGGCTCAAAATTACAACGTTCCCAACATCAGGAAGCTCGCCAATACTGGGCTTGTAATGGCCAAGCACATCGAAGAAAATTACAGGAAGCCAAAGAAGAGGGGGGATGATGATTGA

Protein sequence

MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD

Homology

[Close]

BLAST of Lcy04g015140 vs. ExPASy TrEMBL
Match: A0A6J1BSM8 (uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005345 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.0e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MGF RSSFSF+AGTVLGIYVAQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of Lcy04g015140 vs. ExPASy TrEMBL
Match: A0A5D3CR66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004310 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MGF RSSFSF+AG+V GIYVAQNYNVPNIRKLANTGL MAKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of Lcy04g015140 vs. ExPASy TrEMBL
Match: A0A1S3B1N0 (uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MGF RSSFSF+AG+V GIYVAQNYNVPNIRKLANTGL MAKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of Lcy04g015140 vs. ExPASy TrEMBL
Match: A0A6J1IPG1 (uncharacterized protein LOC111478763 OS=Cucurbita maxima OX=3661 GN=LOC111478763 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MG  RS FS +AGTVLGIY+AQNYNVPNIRKLANTGLVMAKHIEENYRKPKKR DDD
Sbjct: 1  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Lcy04g015140 vs. ExPASy TrEMBL
Match: A0A6J1GCJ7 (uncharacterized protein LOC111452953 OS=Cucurbita moschata OX=3662 GN=LOC111452953 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MG  RS FS +AGTVLGIY+AQNYNVPNIRKLANTGLVMAKHIEENYRKPKKR DDD
Sbjct: 1  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Lcy04g015140 vs. NCBI nr
Match: XP_038882745.1 (uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882746.1 uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882747.1 uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882749.1 uncharacterized protein LOC120073906 [Benincasa hispida])

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MGF RSSFSF+AGTV+GIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGTVIGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Lcy04g015140 vs. NCBI nr
Match: XP_022132505.1 (uncharacterized protein LOC111005345 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 6.1e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MGF RSSFSF+AGTVLGIYVAQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of Lcy04g015140 vs. NCBI nr
Match: XP_008440344.1 (PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo] >TYK12839.1 uncharacterized protein E5676_scaffold255G004310 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MGF RSSFSF+AG+V GIYVAQNYNVPNIRKLANTGL MAKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of Lcy04g015140 vs. NCBI nr
Match: XP_038882750.1 (uncharacterized protein LOC120073907 [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
          MGF RSSFSF+ GTV GIY+AQNYNVPNIRKLANTGLVMAKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFITGTVFGIYLAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Lcy04g015140 vs. NCBI nr
Match: KAF8412996.1 (hypothetical protein HHK36_000968 [Tetracentron sinense])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1    MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGDDD 58
            MG  RSSFSFL GTV G+Y+AQNYNVPNI+KLANTGL+MAKHIEENYRKPKKRGDDD
Sbjct: 986  MGIIRSSFSFLMGTVCGVYIAQNYNVPNIKKLANTGLLMAKHIEENYRKPKKRGDDD 1042

[Close]

BLAST of Lcy04g015140 vs. TAIR 10
Match: AT2G35736.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKK 53
          MG FRS FSF+ G+V G+Y+AQNYNVPNIRKL NTGLV+AKH+EENYRKPKK
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]

BLAST of Lcy04g015140 vs. TAIR 10
Match: AT2G35736.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). )

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKK 53
          MG FRS FSF+ G+V G+Y+AQNYNVPNIRKL NTGLV+AKH+EENYRKPKK
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]

BLAST of Lcy04g015140 vs. TAIR 10
Match: AT4G25225.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-15
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MGFFRSSFSFLAGTVLGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRGD 56
          MG  RSSFSF+ GTV GIY+AQ YNVPNI+KL +  + MAK +EE YRKPK R D
Sbjct: 1  MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

The following BLAST results are available for this feature:

BLAST of Lcy04g015140 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g015140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSM8	3.0e-21	92.98	uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5D3CR66	2.5e-20	89.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B1N0	2.5e-20	89.47	uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=...	[more]
A0A6J1IPG1	1.2e-19	87.72	uncharacterized protein LOC111478763 OS=Cucurbita maxima OX=3661 GN=LOC111478763...	[more]
A0A6J1GCJ7	1.2e-19	87.72	uncharacterized protein LOC111452953 OS=Cucurbita moschata OX=3662 GN=LOC1114529...	[more]

BLAST of Lcy04g015140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882745.1	4.7e-21	92.98	uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882746.1 unchara...	[more]
XP_022132505.1	6.1e-21	92.98	uncharacterized protein LOC111005345 [Momordica charantia]	[more]
XP_008440344.1	5.2e-20	89.47	PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo] >TYK12839.1 uncha...	[more]
XP_038882750.1	5.2e-20	89.47	uncharacterized protein LOC120073907 [Benincasa hispida]	[more]
KAF8412996.1	1.2e-19	85.96	hypothetical protein HHK36_000968 [Tetracentron sinense]	[more]

BLAST of Lcy04g015140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35736.1	1.2e-19	78.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35736.2	1.2e-19	78.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G25225.1	2.4e-15	65.45	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027854	Short transmembrane mitochondrial protein 1	PFAM	PF15054	DUF4535	coord: 6..50 e-value: 1.4E-24 score: 85.6
None	No IPR available	PANTHER	PTHR33528:SF14	OS07G0239500 PROTEIN	coord: 1..57
None	No IPR available	PANTHER	PTHR33528	OS07G0239500 PROTEIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g015140.1	Lcy04g015140.1	mRNA