Lcy04g014660 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g014660
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 46998428 .. 47000961 (+)
RNA-Seq ExpressionLcy04g014660
SyntenyLcy04g014660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGCAAAATGCTTCCATAAGAGGTAAATAACACCACACCGACCTAAAAATATGTGTAGATTTCTTTTCTTTTCTAGAGTTGACAAATATATGTAGATTTTAATATTTATTGCCTTTTTTCCTTCATATTATTTATTGATTGTTATTTTCATCATTATTTTTATTTTTGCAGGAAACAGGTAGATCGCATCTAGATCTCTAGCCTCAGGGTCTGGACCTAGTTGCGCTTGGGCTGCCATTCTTAAAAGTGGGTCAGCCCAATAATAGCTTGGAAATTTTTGTTTCACTTAATTTTTGTCAATTTATGCCTTGTTTGGTCGTCTAATTTTAGTTCCATTTTACCTGGGTTAAATAAATAATAAGTTTAATCATTGTGTTCATCACTTCTAATCTCATCATCTATATATCACGATTCTCATTTATTTTATTTTAGTCAACTCACATTTATAATACATAAATACATCGATTTAGTCTTTGATGTTAATGGTTGAATTAATTACAAACGAAATTGACATGATAGAGTGTAGAGAGTTGACATTATACCTACAAATATTATATGGTTACATATATATAAAAACTTATGTCACACCATATAAGCATCCAAAAAAATATAAATATATAAATAAGGGTGCGACTCAGAAATTTTCAAGTGGGAGAAAATACGTAATTCTCCGTGGACAAAAAAAAAATAGAGAATTTGTGAATATAAAAGGATTTATGACCAATTTTAGTGGTAACAATTATTATTTTTTACTGTTAAAAAAACACAATTATAATTTTTTACTCGAGTTTAATGAGATGTTTTTTTTTCCTTTACTCTACAAATTATGTTTTTCTTCAATTCAACGGTTAGAGTTACAAATTCAAATATCTAATCTTTAAGATTATTAATATATAATGTCTCAACCAATTGAAATATATTTAAGTTGAAAAAAGTCGGGTACAGAATCTCCACAATGGTTTATAATTTTATTTGAATATCAAATATGTTCCTTATGTAATATGTTTGTAACCTTTTTCTTGATTATACATGATATGACTTCAAAATAGCATCAATTTTCAATTGTCCCCTTCAGTATGTCTTAATTGATAAAAGTCATTCATCCGCACGAATGGGACGTTGGTTCCAATAAATTTTTATATTAGCAAATGTGTAAGTAATTCAAATTAAGCAGCACTAATATTTGAAAGTCCCCTCCTAGCTATTAAATCATATCTTGAAAATGCCCTAGTTCCCTACCATCTATCTCACAAATACTGATATATCATAAATTACAGAGTTTTATGTTGTTAAAGAAACAAGCATCATTAAGTTGTTGATGATCTCAAGCCATTAGTGAGATTAGCAACAAAATAGGTAGTCAGAATCATGGGATAGACGTGTCGAGCAACCAAAAACCCTCGACAAACTCTCCCTACAAATAGAAGATGAGACCTTTTTTCTTTTTGAAAAAGTAGAAGATGAGACCTTACTCGTGAGGTACACTGCAATCCTAATTTTTGTTTGGAAAAGTTCGAAACTCTCACCCCTACACATTGGAAAAAAAAAAAAAAAACATGGTTAAATTACATGTTTAGTCCCTAAACTTTCGGGGTTGTGTTAATTTAGTCCCTAAATTTTAAAAAGCTTATAATAGATTCTCGAACTTTCAATTTTGTTCTCAATAGGTCTATGAACTTTAAAAAGTGAATAGGTCCTCAAGCTTTCACTTTTGTGTCCAATAGGTCCATCAACTCTTAATTTTCTGTCTAACAAGTCCTTGACTTATTCTAACATTTTTTTAAAATTCATAAGCCTACTAGATACAAAAAATTGGAAGTTTAGAGTCTTAATAAGCATAAAATTCAATTTTATATATAGTAGATTGATTAATTTTTTAAAAAAATATCGAATACAATAGGGACTTATTAGACACACAATTGAAAATATAGGAACCTATTAGACATTTTTAAAGTTTAGAGACTTATTAGAAACAAAATTGAAAGTTTAAAGACCTATTAGAAACTTTTTAAAGTTCAGATACCTGATATAACTGTCAAAGTTCAAGGGCTAAGTTTATAATAAAACAAAAAAGACATTCACTTGTAATAAGGGTAAAATTGGAATACAGAAATCCACTATTTCATAGATGTAAAATTATGGCTCAAGGTTACAATTTCTATATATAATTTATTTGTATATGTAGCCTTAGCCAGGTCAGTTGTGAAAACTCTGTAGTTAACGACGGCGGTAATATAGCGATACTGTCAGTTATCTTTTTATATTTCCTTCCAAAATGCAGCCCTAATTTTCTCAATTTCAGTTCAGCCCTCCCGTTTTCTATATCACTCGCGATCCCCTCCCCCTCCATCTCAGATTCGAGCTTCAGCCCTCTTAAATCCACCACCCGTCGCCGACGACCAACCGACCAACCGCCACCTGTTCACGGCCTCCTCCCCGCTCTTTCTCCCTTTCGGTCGATCGATTTTGCGGCTCGCAGACTCAAGGCCCTAGCCTCCCATCCCTTATTTCCTTTCTCTTCCTCGGTAAG

mRNA sequence

ATGCGTGCAAAATGCTTCCATAAGAGCCCTAATTTTCTCAATTTCAGTTCAGCCCTCCCGTTTTCTATATCACTCGCGATCCCCTCCCCCTCCATCTCAGATTCGAGCTTCAGCCCTCTTAAATCCACCACCCGTCGCCGACGACCAACCGACCAACCGCCACCTGTTCACGGCCTCCTCCCCGCTCTTTCTCCCTTTCGGTCGATCGATTTTGCGGCTCGCAGACTCAAGGCCCTAGCCTCCCATCCCTTATTTCCTTTCTCTTCCTCGGTAAG

Coding sequence (CDS)

ATGCGTGCAAAATGCTTCCATAAGAGCCCTAATTTTCTCAATTTCAGTTCAGCCCTCCCGTTTTCTATATCACTCGCGATCCCCTCCCCCTCCATCTCAGATTCGAGCTTCAGCCCTCTTAAATCCACCACCCGTCGCCGACGACCAACCGACCAACCGCCACCTGTTCACGGCCTCCTCCCCGCTCTTTCTCCCTTTCGGTCGATCGATTTTGCGGCTCGCAGACTCAAGGCCCTAGCCTCCCATCCCTTATTTCCTTTCTCTTCCTCGGTAAG

Protein sequence

MRAKCFHKSPNFLNFSSALPFSISLAIPSPSISDSSFSPLKSTTRRRRPTDQPPPVHGLLPALSPFRSIDFAARRLKALASHPLFPFSSSV
Homology
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BLAST of Lcy04g014660 vs. NCBI nr
Match: KAG7034338.1 (PI-PLC X domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-12
Identity = 47/73 (64.38%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 17 SALPFSISLAIPSPSISDSSFSPLKSTTRRRRPTDQPPPVHGLLPALSPFRSIDFAARRL 76
          SA P S    +P   +   S SPLKS+T RRRP DQ PPV G LPA SPFRSIDFAAR  
Sbjct: 3  SAFPLSRFPLLPPSRV---SVSPLKSSTWRRRPIDQLPPVRGHLPAHSPFRSIDFAARGD 62

Query: 77 KALASHPLFPFSS 90
          KAL+SHPL+PFSS
Sbjct: 63 KALSSHPLYPFSS 72

The following BLAST results are available for this feature:
BLAST of Lcy04g014660 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g014660 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g014660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034338.18.3e-1264.38PI-PLC X domain-containing protein, partial [Cucurbita argyrosperma subsp. argyr... [more]
BLAST of Lcy04g014660 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g014660.1Lcy04g014660.1mRNA