Lcy04g013940 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g013940
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontranscription termination factor MTERF5, chloroplastic
LocationChr04: 46127712 .. 46131134 (-)
RNA-Seq ExpressionLcy04g013940
SyntenyLcy04g013940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATATTCAGCCGTAAAACAGAGGGGAAAAACTCGCAGATAAAAATTGACGCCGCTGGTCATTTTTCTTCGCCGTTTTCGTGTGGGTATCGGCTCAGGTTGCTTCACACTCGGTTTAGAGACCATCCATTGCTAGTTTTTTGGGTCTGGGTCTCGGTACAAAACCGCGTGGGTCACGGTTTCAGCGTGGGTCTCGGTTTAGAGACGGTTTTCGCCGGAGTGTTGCCGTGGGTACAGGTTCAGGAGGTACTACGGTTGGCGTGGGTCTGTCTTGTTCAGCAGTGGGTTTCGGATTGGAGGCTAAAACGTGCAGTGGGTATTTTTCTTGTGAGCTCAAATCTATTGAGGTTTGAGGTATATTTACATTGGGTAAATTTTTGCCATTGATGTACTGTATTGGTGACTTGTTGCTCTTAATAAAACACTTATAAGCTGGTTCTCAAAGTGGATGTACTGTATTGGTGACTTGTTGTGTTCTTTATTTTTCTGCTTGATTATTTTTCTGTTGAATCTGCGTTCTGATTGGGCATTACAAGTTCGCTTAAATTTCTACAACTTCAAGTTTTGTAAGTGGCATCCACCCCTTCTCTTTATCCTTCAAATACGCAATTAGTTCATAAGCTTTTACTTCTTTCTCCCAAGTTTTCAAACCCACCAGAAGTAGACGCTTGCAGAACCTTTACCAATGCCCTGGAAACTGCTACTGCTACTGCTACTAGGAATTAGCAAACAAGGATAAAATATTTCAACACCCAAAATCAAGGCAAGCTCAATAGTACATAGTCAAGGATAGATATAATGGAGGTTATCTTTTGTTGCCAGTAATGGATTTTGGGCCGAGGTAGTTGCCAGTTATCTGCCTGCATTTATTCACACTGTTTGGGTTTTACTTTTGTTATACTGGGCTTATCTTCTTCTTCTTCTTCTTTTTTAATCTTTTCTGGGAGGGTTTTGTGAATGCTTTTGCTTTCTTTTTGGTTCATAGCTCTGCGGCTGCCATATCCAACTCTGTGGAGGGACCAATTTTAGGATCTCCCTTCGGTGCCGTTCAATTTTAGTCACTCAATAAGAGGAACTATTTGAGCCAAAACTTAAAGATGAGAGCTGTCAGTGCTATGCGATTTGCCCATATCTTCTTCATGCGAAATGGTAGTCTCATCACTACTCAGAGGTACCCTTGGGGTTGTGACTCAGTATTTTTCAGCCTTAATATCTTCACGTATCTAACAAAATTGCATTTTTTTTCTTTTCCTTTCCCTGATGGTTGTTAGGAGACATAGTCAGTTAATAATGTTGTTAAGTTAGAACAGTTGCATGACCTGCCCTTTCCTTGATTCTTTATGCTTATTTCTGTTTTATCTATCACTTCTCTCCATGCTTGAGAATGGGTCATTCAGAAGTTCTGTTTTATATAGGGTTCAGCTCTCTTTCCCCAGGAAACTCTTTTCTAGCCAAGCAAAATTCGGTTAGTGCTTCAGTTTGAGACTCCTTGTCATTGACTTGTTTTAGTAATTTTAGTCTCTTGATAAAGTCTTGTGGTCTCTTAACCATGCTAAGTACCGTGTTTTGATGATCTAAATGGCAGATTCTGAGATAGATGGATCAGTCAACTTGAAGGTTGTATCACCAACCCTTCTAACAGCAGAAAAAGAAGAGGCCAAGGCAGTTTTAACCTTGTTTTTAAAGAAACAAGGTCTGAGCAATGCAATTGCTGCAAGAACGATAAACAAATCCGATCTCTTCATCGACCATCTTGTCTTGAGGCTTCATTTGATTCATAAATCTCGGTATCTAGTAGGTTCGACTTCAATGTACTGCTTATCAGTTATGTTGTTACACTGAATTTGATTTAGTTGGATATAGAATGGTGTGGCTAGAAATTATAATCTAGTTCATATGACTGTGCAGGACGAGAGTTGACGACACTTGAGATTAGAGATGCTCTGAATCCATATCTCGAGTCCCTTCTTGAAGAGCATGGGACTCTTCTCGTGCATGCTGTGGAAAACTTTCCAAACCCTCCTATCAAAGAAAAGACCTCTACAACAGTTCCTGTCTCAAATTCAACAATTGACACGAAGAAGCTGAAAGCCATCTCTCGAGTTAGTGAAGTAGGTCCTACTGGAAAGCTCCGACCTCAGATTCTTTACCTGATTGAGCATGGCTTAAATCTTGAGCAAATTAAAGAAATTACTCGTCGATTCCCCGCTTTTGCTTACTACAGCTTGGAGGGGAAAATAAAGCCTGTGATCGAATTTCTTCTTGATCTTGGGGTGCCAAAATCTGATATCCCTGTTATCCTCAACAAGAGGCCTCAGCTATGTGGAATTAGTCTGACTGAAAATCTAAAACCAACAATGATATTCTTAGAAAATTTGGGTGTGGACAAGAAACAATGGGCAAAAGTGATATACCGTTTTCCAGCCCTTCTCACCTACAGCAAACAGAAGGTTGAGGCAACCATTGATTTCCTCTATGAAATGGGACTCTCGGAGGAGAGCGTGGGTAAGATATTGAACCGTTGGCCAAACATCATAAGTTATAGCGTCGAGGAAAAACTAAGGCCAACAGCCGAATATTTTCATTCGCTAGGAGTTGATGTTGCTGTCCTTCTCTATCGATCGCCACAGACGTTTGGTCTTAGTATCGAGGCTAATTTGAAACCAGTGACACAATTTTTCTTGGAGAGGGGTTACAGCATGGAGGATGTTGGGACCATGAGCTCAAGATATGGAGCCTTGTATACTTTCAGCTTGGCTGAGAATTTAGTGCCGAAATGGGATTTCTTTCTAACCATGGAGTATTCAAAGTCGGAGCTAATCAAATTCCCTCAATATTTTGGTTACAGCCTGGAGGGAAGGATTAAACCAAGGTATGCAATTATGAAGGAGAGCCAGGTGACATTGTTACTGAACCAGTTGTTAACATTATCGGAAAGCGACTTCGTCAAGGCGGTAAAAAAGAAAATGAACAAGTTACTTCCCAACAACTGACTGGCGGCTTTCTATAAGAACTAGATTAATACAATGGAAGCTTTTATGGCCTATGAGATGTCTGGCCTTCTAAGTAATTCTCTTGCAGTGCCTTGTCTGAAACAAGAGATACCGTGTCTCGGGATGATCGGAGATCTGGCATTTGGTTTGCTTGAAACAAGAGATTAATGTATCATGAGGTTCATTTGCCAAATCTACAGCTTTGATGTTACTGTGAACTTTCATGGATTTTGAAGTGTGGATATGGAAGAGAGAATGCCTTGAGCGAATATGTGTACTTGGCCTGGAGTTGCCTTCTTGATTGATCCATCTCTTTGACCTGGATTTATTCTTATTATGTTCATCATTTTCGACCAGTATAATAATTGTAGTATGTAGTCCATATACAAAATTTCAAATAAATGAAATTATGGGGAAAATGTGAATGCTA

mRNA sequence

GAAATATTCAGCCGTAAAACAGAGGGGAAAAACTCGCAGATAAAAATTGACGCCGCTGGTCATTTTTCTTCGCCGTTTTCGTGTGGGTATCGGCTCAGGTTGCTTCACACTCGGTTTAGAGACCATCCATTGCTAGTTTTTTGGGTCTGGGTCTCGGTACAAAACCGCGTGGGTCACGGTTTCAGCGTGGGTCTCGGTTTAGAGACGGTTTTCGCCGGAGTGTTGCCGTGGGTACAGGTTCAGGAGGTACTACGGTTGGCGTGGGTCTGTCTTGTTCAGCAGTGGGTTTCGGATTGGAGGCTAAAACGTGCAGTGGGTATTTTTCTTGTGAGCTCAAATCTATTGAGGTTTGAGCTCTGCGGCTGCCATATCCAACTCTGTGGAGGGACCAATTTTAGGATCTCCCTTCGGTGCCGTTCAATTTTAGTCACTCAATAAGAGGAACTATTTGAGCCAAAACTTAAAGATGAGAGCTGTCAGTGCTATGCGATTTGCCCATATCTTCTTCATGCGAAATGGTAGTCTCATCACTACTCAGAGGTACCCTTGGGGTTGTGACTCAGTATTTTTCAGCCTTAATATCTTCACGTATCTAACAAAATTGCATTTTTTTTCTTTTCCTTTCCCTGATGGTTGTTAGGAGACATAGTCAGTTAATAATGTTGTTAAGTTAGAACAGTTGCATGACCTGCCCTTTCCTTGATTCTTTATGCTTATTTCTGTTTTATCTATCACTTCTCTCCATGCTTGAGAATGGGTCATTCAGAAGTTCTGTTTTATATAGGGTTCAGCTCTCTTTCCCCAGGAAACTCTTTTCTAGCCAAGCAAAATTCGATTCTGAGATAGATGGATCAGTCAACTTGAAGGTTGTATCACCAACCCTTCTAACAGCAGAAAAAGAAGAGGCCAAGGCAGTTTTAACCTTGTTTTTAAAGAAACAAGGTCTGAGCAATGCAATTGCTGCAAGAACGATAAACAAATCCGATCTCTTCATCGACCATCTTGTCTTGAGGCTTCATTTGATTCATAAATCTCGGTATCTAGTAGGACGAGAGTTGACGACACTTGAGATTAGAGATGCTCTGAATCCATATCTCGAGTCCCTTCTTGAAGAGCATGGGACTCTTCTCGTGCATGCTGTGGAAAACTTTCCAAACCCTCCTATCAAAGAAAAGACCTCTACAACAGTTCCTGTCTCAAATTCAACAATTGACACGAAGAAGCTGAAAGCCATCTCTCGAGTTAGTGAAGTAGGTCCTACTGGAAAGCTCCGACCTCAGATTCTTTACCTGATTGAGCATGGCTTAAATCTTGAGCAAATTAAAGAAATTACTCGTCGATTCCCCGCTTTTGCTTACTACAGCTTGGAGGGGAAAATAAAGCCTGTGATCGAATTTCTTCTTGATCTTGGGGTGCCAAAATCTGATATCCCTGTTATCCTCAACAAGAGGCCTCAGCTATGTGGAATTAGTCTGACTGAAAATCTAAAACCAACAATGATATTCTTAGAAAATTTGGGTGTGGACAAGAAACAATGGGCAAAAGTGATATACCGTTTTCCAGCCCTTCTCACCTACAGCAAACAGAAGGTTGAGGCAACCATTGATTTCCTCTATGAAATGGGACTCTCGGAGGAGAGCGTGGGTAAGATATTGAACCGTTGGCCAAACATCATAAGTTATAGCGTCGAGGAAAAACTAAGGCCAACAGCCGAATATTTTCATTCGCTAGGAGTTGATGTTGCTGTCCTTCTCTATCGATCGCCACAGACGTTTGGTCTTAGTATCGAGGCTAATTTGAAACCAGTGACACAATTTTTCTTGGAGAGGGGTTACAGCATGGAGGATGTTGGGACCATGAGCTCAAGATATGGAGCCTTGTATACTTTCAGCTTGGCTGAGAATTTAGTGCCGAAATGGGATTTCTTTCTAACCATGGAGTATTCAAAGTCGGAGCTAATCAAATTCCCTCAATATTTTGGTTACAGCCTGGAGGGAAGGATTAAACCAAGGTATGCAATTATGAAGGAGAGCCAGGTGACATTGTTACTGAACCAGTTGTTAACATTATCGGAAAGCGACTTCGTCAAGGCGGTAAAAAAGAAAATGAACAAGTTACTTCCCAACAACTGACTGGCGGCTTTCTATAAGAACTAGATTAATACAATGGAAGCTTTTATGGCCTATGAGATGTCTGGCCTTCTAAGTAATTCTCTTGCAGTGCCTTGTCTGAAACAAGAGATACCGTGTCTCGGGATGATCGGAGATCTGGCATTTGGTTTGCTTGAAACAAGAGATTAATGTATCATGAGGTTCATTTGCCAAATCTACAGCTTTGATGTTACTGTGAACTTTCATGGATTTTGAAGTGTGGATATGGAAGAGAGAATGCCTTGAGCGAATATGTGTACTTGGCCTGGAGTTGCCTTCTTGATTGATCCATCTCTTTGACCTGGATTTATTCTTATTATGTTCATCATTTTCGACCAGTATAATAATTGTAGTATGTAGTCCATATACAAAATTTCAAATAAATGAAATTATGGGGAAAATGTGAATGCTA

Coding sequence (CDS)

ATGACCTGCCCTTTCCTTGATTCTTTATGCTTATTTCTGTTTTATCTATCACTTCTCTCCATGCTTGAGAATGGGTCATTCAGAAGTTCTGTTTTATATAGGGTTCAGCTCTCTTTCCCCAGGAAACTCTTTTCTAGCCAAGCAAAATTCGATTCTGAGATAGATGGATCAGTCAACTTGAAGGTTGTATCACCAACCCTTCTAACAGCAGAAAAAGAAGAGGCCAAGGCAGTTTTAACCTTGTTTTTAAAGAAACAAGGTCTGAGCAATGCAATTGCTGCAAGAACGATAAACAAATCCGATCTCTTCATCGACCATCTTGTCTTGAGGCTTCATTTGATTCATAAATCTCGGTATCTAGTAGGACGAGAGTTGACGACACTTGAGATTAGAGATGCTCTGAATCCATATCTCGAGTCCCTTCTTGAAGAGCATGGGACTCTTCTCGTGCATGCTGTGGAAAACTTTCCAAACCCTCCTATCAAAGAAAAGACCTCTACAACAGTTCCTGTCTCAAATTCAACAATTGACACGAAGAAGCTGAAAGCCATCTCTCGAGTTAGTGAAGTAGGTCCTACTGGAAAGCTCCGACCTCAGATTCTTTACCTGATTGAGCATGGCTTAAATCTTGAGCAAATTAAAGAAATTACTCGTCGATTCCCCGCTTTTGCTTACTACAGCTTGGAGGGGAAAATAAAGCCTGTGATCGAATTTCTTCTTGATCTTGGGGTGCCAAAATCTGATATCCCTGTTATCCTCAACAAGAGGCCTCAGCTATGTGGAATTAGTCTGACTGAAAATCTAAAACCAACAATGATATTCTTAGAAAATTTGGGTGTGGACAAGAAACAATGGGCAAAAGTGATATACCGTTTTCCAGCCCTTCTCACCTACAGCAAACAGAAGGTTGAGGCAACCATTGATTTCCTCTATGAAATGGGACTCTCGGAGGAGAGCGTGGGTAAGATATTGAACCGTTGGCCAAACATCATAAGTTATAGCGTCGAGGAAAAACTAAGGCCAACAGCCGAATATTTTCATTCGCTAGGAGTTGATGTTGCTGTCCTTCTCTATCGATCGCCACAGACGTTTGGTCTTAGTATCGAGGCTAATTTGAAACCAGTGACACAATTTTTCTTGGAGAGGGGTTACAGCATGGAGGATGTTGGGACCATGAGCTCAAGATATGGAGCCTTGTATACTTTCAGCTTGGCTGAGAATTTAGTGCCGAAATGGGATTTCTTTCTAACCATGGAGTATTCAAAGTCGGAGCTAATCAAATTCCCTCAATATTTTGGTTACAGCCTGGAGGGAAGGATTAAACCAAGGTATGCAATTATGAAGGAGAGCCAGGTGACATTGTTACTGAACCAGTTGTTAACATTATCGGAAAGCGACTTCGTCAAGGCGGTAAAAAAGAAAATGAACAAGTTACTTCCCAACAACTGA

Protein sequence

MTCPFLDSLCLFLFYLSLLSMLENGSFRSSVLYRVQLSFPRKLFSSQAKFDSEIDGSVNLKVVSPTLLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEHGTLLVHAVENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILNRWPNIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVKKKMNKLLPNN
Homology
[Close]
BLAST of Lcy04g013940 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 3.8e-167
Identity = 301/473 (63.64%), Postives = 375/473 (79.28%), Query Frame = 0 

Query: 18  LLSMLENGSFRSSVLYRVQLSFPRKLFSSQAKFDSEIDGSVNLKVVSPTLLTAEKEEAKA 77
           L++  E  S R+ + +  +LSF ++    + K   E     + + V P L+ AEKEEAKA
Sbjct: 14  LVARREKPSTRAQLWFTGRLSFRQETNGIRLKNRVEF----SPRPVPPNLIAAEKEEAKA 73

Query: 78  VLTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPY 137
           VLTLF KKQGLSN++++R INKSDLFIDHLV RLH +HK+RYLVGRELTTLEIRD+L PY
Sbjct: 74  VLTLFFKKQGLSNSLSSRLINKSDLFIDHLVSRLHSVHKARYLVGRELTTLEIRDSLIPY 133

Query: 138 LESLLEEHGTLLVHAVENFPNPPIKEKTSTTVPVS--------NSTIDTKKLKAISRVSE 197
           LE L EEHG LL   V +FP+PP + +   + PVS        +S  DT+KL+A+SRVSE
Sbjct: 134 LEQLHEEHGDLLAELVVSFPDPPAEPRLVASSPVSVLPPRGDTDSAADTRKLRAVSRVSE 193

Query: 198 VGPTGKLRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDI 257
           +   G LRPQ LYL++ GLNLEQIK ITR+F AF YYSL+GKIKPV+EFLLDLG+PKSDI
Sbjct: 194 LDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDI 253

Query: 258 PVILNKRPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDF 317
           P IL KRPQ+CGISLT+NLKPTM FLE LG+DK QWAK+I RFPA+LTYS+QK+ +T++F
Sbjct: 254 PTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQKLTSTVEF 313

Query: 318 LYEMGLSEESVGKILNRWPNIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIE 377
           L + GL+EE +G+IL R PNI+SYSVE+KLRPT EYF SL VDVAVLL+R PQTFGLSIE
Sbjct: 314 LSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIE 373

Query: 378 ANLKPVTQFFLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFP 437
           +NLKPVT+FFLE+G+ ++++G M SRYGALYTFSL EN++PKWD+F TM+Y KSEL+KFP
Sbjct: 374 SNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQTMDYPKSELVKFP 433

Query: 438 QYFGYSLEGRIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           Q+FGYSL+ RIKPRY +++ S V LLLNQ+L+LS  +F K VKKKM KL+ NN
Sbjct: 434 QFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKLVSNN 482

[Close]
BLAST of Lcy04g013940 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-27
Identity = 74/289 (25.61%), Postives = 153/289 (52.94%), Query Frame = 0 

Query: 195 KLRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILN 254
           +++ ++ + ++ G+N      +   +P    +     ++  I +L + G+   ++  +L 
Sbjct: 315 EVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLA 374

Query: 255 KRPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQK-VEATIDFLYEM 314
            +P L G S+ E  KP + +   LG+ K+   +++   P L     +K +   + FL EM
Sbjct: 375 YKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEM 434

Query: 315 GLSEESVGKILNRWPNIISYSVEEKLRPTAEYFHS-LGV---DVAVLLYRSPQTFGLSIE 374
           G+  E++G +L ++P++++ S+ +K+RP   +  +  GV   D+  ++   P   G SI 
Sbjct: 435 GIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIG 494

Query: 375 ANLKPVTQFFLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFF-LTMEYSKSELIKF 434
             L+P  ++++  G     +G M + +  L  +++ +NL PK+ +   TM     +LI+F
Sbjct: 495 TKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEF 554

Query: 435 PQYFGYSLEGRIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVKKKMNK 478
           P++F YSLE RI PR+ IM E++V   L  +L  ++ +F + V+ K+ +
Sbjct: 555 PRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVRDKVER 602

[Close]
BLAST of Lcy04g013940 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.6e-24
Identity = 71/268 (26.49%), Postives = 135/268 (50.37%), Query Frame = 0 

Query: 207 GLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTE 266
           G+   ++  I  R P      L+ ++ P++E L  LG    ++   + K P +   S+ E
Sbjct: 53  GIQERKLPYIVSRCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEE 112

Query: 267 NLKPTMIFLENLGVDKKQWAKVIYRFPALLTYS-KQKVEATIDFLYEMGLSEES-VGKIL 326
            L P + F + LGV + Q  K+I   P L++YS   K+   + FL  +GL ++  +GK+L
Sbjct: 113 KLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVL 172

Query: 327 NRWPNIISYSVEEKLRPTAEYFHS---LGVD-VAVLLYRSPQTFGLSIEANLKPVTQFFL 386
            + P ++ YSV+++LRPT E+  S   L  D +  ++   PQ     +   LKP   +  
Sbjct: 173 VKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLK 232

Query: 387 ERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFL-TMEYSKSELIKFPQYFGYSLEGR 446
           E G+    + TM + Y  +   S+  +L P+  F +  M     E+  +P++F + L+ +
Sbjct: 233 ECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKK 292

Query: 447 IKPRYAIMKESQVTLLLNQLLTLSESDF 468
           ++ R+ ++K++ +   L ++L  +   F
Sbjct: 293 VESRFKLVKKNNIDCSLREMLDCNTKKF 320

[Close]
BLAST of Lcy04g013940 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.8e-23
Identity = 72/283 (25.44%), Postives = 140/283 (49.47%), Query Frame = 0 

Query: 196 LRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNK 255
           L P + YL    +    +  +  R+P    + LEG +   I +L+ +GV +  +  ++ +
Sbjct: 180 LAPVVKYLQGMDVRPHDVPRVLERYPELLGFKLEGTMSTSIAYLVGIGVARRQVGSVITR 239

Query: 256 RPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYS-KQKVEATIDFLYEMG 315
            P++ G+ + + +KP +  LE +G+ +   A++I + P +L +  + KV+  I+ L E G
Sbjct: 240 FPEVLGMRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLEFG 299

Query: 316 LSEESVGKILNRWPNIISYSVEEKLRPTAEYFHS----LGVDVAVLLYRSPQTFGLSIEA 375
           + +E++  I+ ++P+I+   + +KL      F S       D   ++ R PQ   L   A
Sbjct: 300 VRKEALAFIVAQYPDILGIELRDKLATQQSLFESSILVSSEDFGRVIERMPQAISLGRTA 359

Query: 376 NLKPVTQFFLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFLT-MEYSKSELIKFP 435
            LK V  F    G+ +  V  M      L   ++ + +   +++F   ME    EL++FP
Sbjct: 360 VLKHV-NFLTSCGFLLSQVSKMVVACPQLLALNM-DIMKMSFEYFQNEMERDLEELVEFP 419

Query: 436 QYFGYSLEGRIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVK 473
            +F Y LE  ++PR+ ++ +   T  L  LL  S++ F + +K
Sbjct: 420 AFFTYGLESTVRPRHEMVAKKGFTCSLAWLLNCSDAKFDERMK 460

[Close]
BLAST of Lcy04g013940 vs. ExPASy Swiss-Prot
Match: B6TGN4 (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-22
Identity = 69/283 (24.38%), Postives = 143/283 (50.53%), Query Frame = 0 

Query: 196 LRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNK 255
           L P + YL    +    +  +  R+P    + LEG +   + +L+ +GV +  +  ++ +
Sbjct: 171 LAPVVKYLQGMDVRPTDVPRVLERYPELLGFKLEGTMSTSVAYLVGIGVGRRQVGSVITR 230

Query: 256 RPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYS-KQKVEATIDFLYEMG 315
            P++ G+ + + +KP +  LE +G+ +   A++I + P +L +  ++KV+  I+ L ++G
Sbjct: 231 FPEVLGMRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLQEKVKPNIEALVDIG 290

Query: 316 LSEESVGKILNRWPNIISYSVEEKLRPTAEYFHSLGV----DVAVLLYRSPQTFGLSIEA 375
           + +E++  I+ ++P+++   + +KL      F S  +    D   +L R PQ   L   A
Sbjct: 291 VRKEALASIVMQYPDVLGLELRDKLVAQQSLFESSILVSREDFGRVLERMPQAISLGRAA 350

Query: 376 NLKPVTQFFLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFLT-MEYSKSELIKFP 435
            LK V  F    G+ +  V  M      L   ++ + +   +++F   ME    EL++FP
Sbjct: 351 VLKHV-NFLTACGFMLSQVSKMVVACPQLLALNI-DIMRMNFEYFKNEMERDLEELVEFP 410

Query: 436 QYFGYSLEGRIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVK 473
            +F Y +E  ++PR+ ++    +T  L  LL  S++ F + +K
Sbjct: 411 AFFTYGIESTVRPRHEMVSRKGLTCSLAWLLNCSDAKFDERMK 451

[Close]
BLAST of Lcy04g013940 vs. ExPASy TrEMBL
Match: A0A6J1BZ40 (transcription termination factor MTERF5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005994 PE=3 SV=1)

HSP 1 Score: 818.5 bits (2113), Expect = 1.4e-233
Identity = 421/449 (93.76%), Postives = 433/449 (96.44%), Query Frame = 0 

Query: 34  RVQLSFPRKLFSSQAKFDSEIDGSVNLKVVSPTLLTAEKEEAKAVLTLFLKKQGLSNAIA 93
           RVQLSFPRKLFS +AKFDSE DG VNLKVVSP LLTAEKEEAKAVLTLFLKKQG+SNAIA
Sbjct: 25  RVQLSFPRKLFSLRAKFDSETDGPVNLKVVSPALLTAEKEEAKAVLTLFLKKQGMSNAIA 84

Query: 94  ARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEHGTLLVHAV 153
           ARTINKSDLFIDHLVL+LHLIHKSRYLVGRELTTLEIRDALNPYLESLLE HGTLLVHAV
Sbjct: 85  ARTINKSDLFIDHLVLKLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEVHGTLLVHAV 144

Query: 154 ENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIEHGLNLEQI 213
           ENFPN PIKEKT+TTV V NSTID KKLKA+SRVSE+GPTGKLRPQILYLIEHGLNLEQI
Sbjct: 145 ENFPNAPIKEKTTTTVSVLNSTIDVKKLKAVSRVSEIGPTGKLRPQILYLIEHGLNLEQI 204

Query: 214 KEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTENLKPTMI 273
           KEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISL+ENLKPTMI
Sbjct: 205 KEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLSENLKPTMI 264

Query: 274 FLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILNRWPNIISY 333
           FLENLGVDK QWAKVIYRFPALLTYSKQKVEATI FLYEMGLSEESVGK+L R PNIISY
Sbjct: 265 FLENLGVDKTQWAKVIYRFPALLTYSKQKVEATIHFLYEMGLSEESVGKVLTRCPNIISY 324

Query: 334 SVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMS 393
           SVEEKLRPTAEYF SLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTM 
Sbjct: 325 SVEEKLRPTAEYFLSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMI 384

Query: 394 SRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAIMKESQVT 453
           SRYGALYTFSLAEN+VPKW+FFLTMEYSKSEL+KFPQYFGYSLEGRIKPRYAIMKESQVT
Sbjct: 385 SRYGALYTFSLAENVVPKWEFFLTMEYSKSELVKFPQYFGYSLEGRIKPRYAIMKESQVT 444

Query: 454 LLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           LLLNQLLTLSESDFVKAVKKK+NKLL NN
Sbjct: 445 LLLNQLLTLSESDFVKAVKKKVNKLLSNN 473

[Close]
BLAST of Lcy04g013940 vs. ExPASy TrEMBL
Match: A0A6J1IMI2 (transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477823 PE=3 SV=1)

HSP 1 Score: 798.1 bits (2060), Expect = 2.0e-227
Identity = 411/456 (90.13%), Postives = 431/456 (94.52%), Query Frame = 0 

Query: 28  RSSVLYRVQLSFPRKLFSSQAKFDSEI-DGSVNLKVVSPTLLTAEKEEAKAVLTLFLKKQ 87
           +S VLYRVQ+SF RKLFS +AKFDSEI DGSVNLKVVSP LLTAEKEEAKAVLTLFLKKQ
Sbjct: 24  QSFVLYRVQVSFSRKLFSCRAKFDSEIDDGSVNLKVVSPALLTAEKEEAKAVLTLFLKKQ 83

Query: 88  GLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEHG 147
           GLSNAIAARTINKSDLFI+HL+LRLHLIHKSRYLVGRELTTLEIRDALNPYLESL EEHG
Sbjct: 84  GLSNAIAARTINKSDLFINHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHG 143

Query: 148 TLLVHAVENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIEH 207
           T LVHAVENFPN  IKEKT+TTVPV NSTIDTKKL+A+SRVSE+GPTGKLRPQILYL+EH
Sbjct: 144 THLVHAVENFPNRSIKEKTTTTVPVLNSTIDTKKLRAVSRVSELGPTGKLRPQILYLMEH 203

Query: 208 GLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTE 267
           GL LEQIKEITR+FPAFAYYSLEGKIKPVIEF LDLGVPKSDIP+ILNKRPQLCGISLTE
Sbjct: 204 GLKLEQIKEITRKFPAFAYYSLEGKIKPVIEFFLDLGVPKSDIPIILNKRPQLCGISLTE 263

Query: 268 NLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILNR 327
           NLKPTM+FLE LGVDKKQWAKVIYRFPALLTYSKQKVE T  FLYEMG+SEESVGKIL R
Sbjct: 264 NLKPTMLFLETLGVDKKQWAKVIYRFPALLTYSKQKVETTTGFLYEMGISEESVGKILTR 323

Query: 328 WPNIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSM 387
            P+IISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIE NLKPVTQFFLERGYSM
Sbjct: 324 CPHIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEGNLKPVTQFFLERGYSM 383

Query: 388 EDVGTMSSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAI 447
           EDVGTM SRYGALYTFSLAEN+VPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAI
Sbjct: 384 EDVGTMISRYGALYTFSLAENIVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAI 443

Query: 448 MKESQVTLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           MK+S V LLLNQLLTLS++DF  A+KKKMNKLLP N
Sbjct: 444 MKKSGVMLLLNQLLTLSDTDFDTALKKKMNKLLPKN 479

[Close]
BLAST of Lcy04g013940 vs. ExPASy TrEMBL
Match: A0A6J1IRJ6 (transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477823 PE=3 SV=1)

HSP 1 Score: 793.5 bits (2048), Expect = 4.9e-226
Identity = 411/457 (89.93%), Postives = 431/457 (94.31%), Query Frame = 0 

Query: 28  RSSVLYRVQLSFPRKLFSSQAKF-DSEI-DGSVNLKVVSPTLLTAEKEEAKAVLTLFLKK 87
           +S VLYRVQ+SF RKLFS +AKF DSEI DGSVNLKVVSP LLTAEKEEAKAVLTLFLKK
Sbjct: 24  QSFVLYRVQVSFSRKLFSCRAKFADSEIDDGSVNLKVVSPALLTAEKEEAKAVLTLFLKK 83

Query: 88  QGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEH 147
           QGLSNAIAARTINKSDLFI+HL+LRLHLIHKSRYLVGRELTTLEIRDALNPYLESL EEH
Sbjct: 84  QGLSNAIAARTINKSDLFINHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEH 143

Query: 148 GTLLVHAVENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIE 207
           GT LVHAVENFPN  IKEKT+TTVPV NSTIDTKKL+A+SRVSE+GPTGKLRPQILYL+E
Sbjct: 144 GTHLVHAVENFPNRSIKEKTTTTVPVLNSTIDTKKLRAVSRVSELGPTGKLRPQILYLME 203

Query: 208 HGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLT 267
           HGL LEQIKEITR+FPAFAYYSLEGKIKPVIEF LDLGVPKSDIP+ILNKRPQLCGISLT
Sbjct: 204 HGLKLEQIKEITRKFPAFAYYSLEGKIKPVIEFFLDLGVPKSDIPIILNKRPQLCGISLT 263

Query: 268 ENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILN 327
           ENLKPTM+FLE LGVDKKQWAKVIYRFPALLTYSKQKVE T  FLYEMG+SEESVGKIL 
Sbjct: 264 ENLKPTMLFLETLGVDKKQWAKVIYRFPALLTYSKQKVETTTGFLYEMGISEESVGKILT 323

Query: 328 RWPNIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYS 387
           R P+IISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIE NLKPVTQFFLERGYS
Sbjct: 324 RCPHIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEGNLKPVTQFFLERGYS 383

Query: 388 MEDVGTMSSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYA 447
           MEDVGTM SRYGALYTFSLAEN+VPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYA
Sbjct: 384 MEDVGTMISRYGALYTFSLAENIVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYA 443

Query: 448 IMKESQVTLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           IMK+S V LLLNQLLTLS++DF  A+KKKMNKLLP N
Sbjct: 444 IMKKSGVMLLLNQLLTLSDTDFDTALKKKMNKLLPKN 480

[Close]
BLAST of Lcy04g013940 vs. ExPASy TrEMBL
Match: A0A6J1IIQ0 (transcription termination factor MTERF5, chloroplastic-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111477823 PE=3 SV=1)

HSP 1 Score: 791.6 bits (2043), Expect = 1.9e-225
Identity = 407/450 (90.44%), Postives = 426/450 (94.67%), Query Frame = 0 

Query: 34  RVQLSFPRKLFSSQAKFDSEI-DGSVNLKVVSPTLLTAEKEEAKAVLTLFLKKQGLSNAI 93
           RVQ+SF RKLFS +AKFDSEI DGSVNLKVVSP LLTAEKEEAKAVLTLFLKKQGLSNAI
Sbjct: 25  RVQVSFSRKLFSCRAKFDSEIDDGSVNLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAI 84

Query: 94  AARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEHGTLLVHA 153
           AARTINKSDLFI+HL+LRLHLIHKSRYLVGRELTTLEIRDALNPYLESL EEHGT LVHA
Sbjct: 85  AARTINKSDLFINHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHA 144

Query: 154 VENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIEHGLNLEQ 213
           VENFPN  IKEKT+TTVPV NSTIDTKKL+A+SRVSE+GPTGKLRPQILYL+EHGL LEQ
Sbjct: 145 VENFPNRSIKEKTTTTVPVLNSTIDTKKLRAVSRVSELGPTGKLRPQILYLMEHGLKLEQ 204

Query: 214 IKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTENLKPTM 273
           IKEITR+FPAFAYYSLEGKIKPVIEF LDLGVPKSDIP+ILNKRPQLCGISLTENLKPTM
Sbjct: 205 IKEITRKFPAFAYYSLEGKIKPVIEFFLDLGVPKSDIPIILNKRPQLCGISLTENLKPTM 264

Query: 274 IFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILNRWPNIIS 333
           +FLE LGVDKKQWAKVIYRFPALLTYSKQKVE T  FLYEMG+SEESVGKIL R P+IIS
Sbjct: 265 LFLETLGVDKKQWAKVIYRFPALLTYSKQKVETTTGFLYEMGISEESVGKILTRCPHIIS 324

Query: 334 YSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTM 393
           YSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIE NLKPVTQFFLERGYSMEDVGTM
Sbjct: 325 YSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEGNLKPVTQFFLERGYSMEDVGTM 384

Query: 394 SSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAIMKESQV 453
            SRYGALYTFSLAEN+VPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAIMK+S V
Sbjct: 385 ISRYGALYTFSLAENIVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAIMKKSGV 444

Query: 454 TLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
            LLLNQLLTLS++DF  A+KKKMNKLLP N
Sbjct: 445 MLLLNQLLTLSDTDFDTALKKKMNKLLPKN 474

[Close]
BLAST of Lcy04g013940 vs. ExPASy TrEMBL
Match: A0A6J1GGK1 (transcription termination factor MTERF5, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453745 PE=3 SV=1)

HSP 1 Score: 790.8 bits (2041), Expect = 3.2e-225
Identity = 407/450 (90.44%), Postives = 426/450 (94.67%), Query Frame = 0 

Query: 34  RVQLSFPRKLFSSQAKFDSEI-DGSVNLKVVSPTLLTAEKEEAKAVLTLFLKKQGLSNAI 93
           RVQ+SF RKLFS +AKFDSEI DGSVNLKVVSP LLTAEKEEAKAVLTLFLKKQGLSNAI
Sbjct: 25  RVQVSFSRKLFSCRAKFDSEIDDGSVNLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAI 84

Query: 94  AARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEHGTLLVHA 153
           AARTINKSDLFI+HL+LRLHLIHKSRYLVGRELTTLEIRDALNPYLESL EEHGT LVHA
Sbjct: 85  AARTINKSDLFINHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHA 144

Query: 154 VENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIEHGLNLEQ 213
           VENFPN  IKEKT+TTVPVSNSTIDTKKL+A+SRVSE+GPTGKLRPQILYL+EHGL LEQ
Sbjct: 145 VENFPNRSIKEKTTTTVPVSNSTIDTKKLRAVSRVSELGPTGKLRPQILYLMEHGLKLEQ 204

Query: 214 IKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTENLKPTM 273
           IKEITR+FPAFAYYSLEGKIKPVIEF LDLGVPKSDIP ILNKRPQLCGISLTENLKPTM
Sbjct: 205 IKEITRKFPAFAYYSLEGKIKPVIEFFLDLGVPKSDIPTILNKRPQLCGISLTENLKPTM 264

Query: 274 IFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILNRWPNIIS 333
           +FLE LGVDKKQWAKVIYRFPALLTYSKQKVE T  FLYEMG+SEESVGKIL R P+IIS
Sbjct: 265 LFLETLGVDKKQWAKVIYRFPALLTYSKQKVETTTGFLYEMGISEESVGKILTRCPHIIS 324

Query: 334 YSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTM 393
           YSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIE NLKPVTQFFLERGYSMEDVGTM
Sbjct: 325 YSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEGNLKPVTQFFLERGYSMEDVGTM 384

Query: 394 SSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAIMKESQV 453
            SRYGALYTFSLAEN+VPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPR+AIMK+S V
Sbjct: 385 ISRYGALYTFSLAENIVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRHAIMKKSGV 444

Query: 454 TLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
            LLLNQLLTLS++DF  A+KKKMNKLLP N
Sbjct: 445 MLLLNQLLTLSDTDFDTALKKKMNKLLPKN 474

[Close]
BLAST of Lcy04g013940 vs. NCBI nr
Match: XP_038883229.1 (transcription termination factor MTERF5, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 825.1 bits (2130), Expect = 3.2e-235
Identity = 422/464 (90.95%), Postives = 439/464 (94.61%), Query Frame = 0 

Query: 19  LSMLENGSFRSSVLYRVQLSFPRKLFSSQAKFDSEIDGSVNLKVVSPTLLTAEKEEAKAV 78
           LS++ENGS RS VLYRVQ+SFPRK FS +AKFDSEIDGS N+KVVSP LLTAEKEEAKAV
Sbjct: 13  LSLIENGSSRSFVLYRVQVSFPRKPFSCRAKFDSEIDGSANIKVVSPALLTAEKEEAKAV 72

Query: 79  LTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYL 138
           LTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYL
Sbjct: 73  LTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYL 132

Query: 139 ESLLEEHGTLLVHAVENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRP 198
           ESL EEHGT LVHAVENFPNPPIKEK +T  PVSNSTIDTKKL+AISRVSE GPTGKLRP
Sbjct: 133 ESLFEEHGTHLVHAVENFPNPPIKEKIATRAPVSNSTIDTKKLRAISRVSEKGPTGKLRP 192

Query: 199 QILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQ 258
           QILYLIEHGLNL+QIKEITRRFPAFAYYSLEGKIKPVIEF LDLGVPKSDIPVILNKRPQ
Sbjct: 193 QILYLIEHGLNLDQIKEITRRFPAFAYYSLEGKIKPVIEFFLDLGVPKSDIPVILNKRPQ 252

Query: 259 LCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEE 318
           LCGISLTENLKPTM FLENLGVDKK+WAKVIYRFPA+LTYSKQKVE T  FLYEMGLSEE
Sbjct: 253 LCGISLTENLKPTMTFLENLGVDKKKWAKVIYRFPAVLTYSKQKVETTTSFLYEMGLSEE 312

Query: 319 SVGKILNRWPNIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQF 378
           SVGK+L R PNIISYSVEEKLRPTA+YFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQF
Sbjct: 313 SVGKVLTRCPNIISYSVEEKLRPTAKYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQF 372

Query: 379 FLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEG 438
           FLERGYSMEDVGTM SRYGALYTFSLA+NLVPKWDFFLTM YSK ELIKFPQYFGYSLEG
Sbjct: 373 FLERGYSMEDVGTMISRYGALYTFSLADNLVPKWDFFLTMGYSKLELIKFPQYFGYSLEG 432

Query: 439 RIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           RIKPRYAIMK+SQV LLLNQLLTLSESDF++ VKKK+NKLLP N
Sbjct: 433 RIKPRYAIMKKSQVMLLLNQLLTLSESDFIETVKKKVNKLLPKN 476

[Close]
BLAST of Lcy04g013940 vs. NCBI nr
Match: XP_022133428.1 (transcription termination factor MTERF5, chloroplastic [Momordica charantia] >XP_022133429.1 transcription termination factor MTERF5, chloroplastic [Momordica charantia])

HSP 1 Score: 818.5 bits (2113), Expect = 3.0e-233
Identity = 421/449 (93.76%), Postives = 433/449 (96.44%), Query Frame = 0 

Query: 34  RVQLSFPRKLFSSQAKFDSEIDGSVNLKVVSPTLLTAEKEEAKAVLTLFLKKQGLSNAIA 93
           RVQLSFPRKLFS +AKFDSE DG VNLKVVSP LLTAEKEEAKAVLTLFLKKQG+SNAIA
Sbjct: 25  RVQLSFPRKLFSLRAKFDSETDGPVNLKVVSPALLTAEKEEAKAVLTLFLKKQGMSNAIA 84

Query: 94  ARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEHGTLLVHAV 153
           ARTINKSDLFIDHLVL+LHLIHKSRYLVGRELTTLEIRDALNPYLESLLE HGTLLVHAV
Sbjct: 85  ARTINKSDLFIDHLVLKLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEVHGTLLVHAV 144

Query: 154 ENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIEHGLNLEQI 213
           ENFPN PIKEKT+TTV V NSTID KKLKA+SRVSE+GPTGKLRPQILYLIEHGLNLEQI
Sbjct: 145 ENFPNAPIKEKTTTTVSVLNSTIDVKKLKAVSRVSEIGPTGKLRPQILYLIEHGLNLEQI 204

Query: 214 KEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTENLKPTMI 273
           KEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISL+ENLKPTMI
Sbjct: 205 KEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLSENLKPTMI 264

Query: 274 FLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILNRWPNIISY 333
           FLENLGVDK QWAKVIYRFPALLTYSKQKVEATI FLYEMGLSEESVGK+L R PNIISY
Sbjct: 265 FLENLGVDKTQWAKVIYRFPALLTYSKQKVEATIHFLYEMGLSEESVGKVLTRCPNIISY 324

Query: 334 SVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMS 393
           SVEEKLRPTAEYF SLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTM 
Sbjct: 325 SVEEKLRPTAEYFLSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMI 384

Query: 394 SRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAIMKESQVT 453
           SRYGALYTFSLAEN+VPKW+FFLTMEYSKSEL+KFPQYFGYSLEGRIKPRYAIMKESQVT
Sbjct: 385 SRYGALYTFSLAENVVPKWEFFLTMEYSKSELVKFPQYFGYSLEGRIKPRYAIMKESQVT 444

Query: 454 LLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           LLLNQLLTLSESDFVKAVKKK+NKLL NN
Sbjct: 445 LLLNQLLTLSESDFVKAVKKKVNKLLSNN 473

[Close]
BLAST of Lcy04g013940 vs. NCBI nr
Match: XP_038883227.1 (transcription termination factor MTERF5, chloroplastic isoform X1 [Benincasa hispida] >XP_038883228.1 transcription termination factor MTERF5, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 812.0 bits (2096), Expect = 2.8e-231
Identity = 419/470 (89.15%), Postives = 440/470 (93.62%), Query Frame = 0 

Query: 13  LFYLSLLSMLENGSFRSSVLYRVQLSFPRKLFSSQAKFDSEIDGSVNLKVVSPTLLTAEK 72
           +F++S  S++   + RS VLYRVQ+SFPRK FS +AKFDSEIDGS N+KVVSP LLTAEK
Sbjct: 12  VFFMSNRSLIT--TQRSFVLYRVQVSFPRKPFSCRAKFDSEIDGSANIKVVSPALLTAEK 71

Query: 73  EEAKAVLTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRD 132
           EEAKAVLTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRD
Sbjct: 72  EEAKAVLTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRD 131

Query: 133 ALNPYLESLLEEHGTLLVHAVENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGP 192
           ALNPYLESL EEHGT LVHAVENFPNPPIKEK +T  PVSNSTIDTKKL+AISRVSE GP
Sbjct: 132 ALNPYLESLFEEHGTHLVHAVENFPNPPIKEKIATRAPVSNSTIDTKKLRAISRVSEKGP 191

Query: 193 TGKLRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVI 252
           TGKLRPQILYLIEHGLNL+QIKEITRRFPAFAYYSLEGKIKPVIEF LDLGVPKSDIPVI
Sbjct: 192 TGKLRPQILYLIEHGLNLDQIKEITRRFPAFAYYSLEGKIKPVIEFFLDLGVPKSDIPVI 251

Query: 253 LNKRPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYE 312
           LNKRPQLCGISLTENLKPTM FLENLGVDKK+WAKVIYRFPA+LTYSKQKVE T  FLYE
Sbjct: 252 LNKRPQLCGISLTENLKPTMTFLENLGVDKKKWAKVIYRFPAVLTYSKQKVETTTSFLYE 311

Query: 313 MGLSEESVGKILNRWPNIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANL 372
           MGLSEESVGK+L R PNIISYSVEEKLRPTA+YFHSLGVDVAVLLYRSPQTFGLSIEANL
Sbjct: 312 MGLSEESVGKVLTRCPNIISYSVEEKLRPTAKYFHSLGVDVAVLLYRSPQTFGLSIEANL 371

Query: 373 KPVTQFFLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYF 432
           KPVTQFFLERGYSMEDVGTM SRYGALYTFSLA+NLVPKWDFFLTM YSK ELIKFPQYF
Sbjct: 372 KPVTQFFLERGYSMEDVGTMISRYGALYTFSLADNLVPKWDFFLTMGYSKLELIKFPQYF 431

Query: 433 GYSLEGRIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           GYSLEGRIKPRYAIMK+SQV LLLNQLLTLSESDF++ VKKK+NKLLP N
Sbjct: 432 GYSLEGRIKPRYAIMKKSQVMLLLNQLLTLSESDFIETVKKKVNKLLPKN 479

[Close]
BLAST of Lcy04g013940 vs. NCBI nr
Match: XP_038883230.1 (transcription termination factor MTERF5, chloroplastic isoform X3 [Benincasa hispida] >XP_038883231.1 transcription termination factor MTERF5, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 805.1 bits (2078), Expect = 3.4e-229
Identity = 411/449 (91.54%), Postives = 426/449 (94.88%), Query Frame = 0 

Query: 34  RVQLSFPRKLFSSQAKFDSEIDGSVNLKVVSPTLLTAEKEEAKAVLTLFLKKQGLSNAIA 93
           RVQ+SFPRK FS +AKFDSEIDGS N+KVVSP LLTAEKEEAKAVLTLFLKKQGLSNAIA
Sbjct: 25  RVQVSFPRKPFSCRAKFDSEIDGSANIKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIA 84

Query: 94  ARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEHGTLLVHAV 153
           ARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESL EEHGT LVHAV
Sbjct: 85  ARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAV 144

Query: 154 ENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIEHGLNLEQI 213
           ENFPNPPIKEK +T  PVSNSTIDTKKL+AISRVSE GPTGKLRPQILYLIEHGLNL+QI
Sbjct: 145 ENFPNPPIKEKIATRAPVSNSTIDTKKLRAISRVSEKGPTGKLRPQILYLIEHGLNLDQI 204

Query: 214 KEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTENLKPTMI 273
           KEITRRFPAFAYYSLEGKIKPVIEF LDLGVPKSDIPVILNKRPQLCGISLTENLKPTM 
Sbjct: 205 KEITRRFPAFAYYSLEGKIKPVIEFFLDLGVPKSDIPVILNKRPQLCGISLTENLKPTMT 264

Query: 274 FLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILNRWPNIISY 333
           FLENLGVDKK+WAKVIYRFPA+LTYSKQKVE T  FLYEMGLSEESVGK+L R PNIISY
Sbjct: 265 FLENLGVDKKKWAKVIYRFPAVLTYSKQKVETTTSFLYEMGLSEESVGKVLTRCPNIISY 324

Query: 334 SVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMS 393
           SVEEKLRPTA+YFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTM 
Sbjct: 325 SVEEKLRPTAKYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMI 384

Query: 394 SRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAIMKESQVT 453
           SRYGALYTFSLA+NLVPKWDFFLTM YSK ELIKFPQYFGYSLEGRIKPRYAIMK+SQV 
Sbjct: 385 SRYGALYTFSLADNLVPKWDFFLTMGYSKLELIKFPQYFGYSLEGRIKPRYAIMKKSQVM 444

Query: 454 LLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           LLLNQLLTLSESDF++ VKKK+NKLLP N
Sbjct: 445 LLLNQLLTLSESDFIETVKKKVNKLLPKN 473

[Close]
BLAST of Lcy04g013940 vs. NCBI nr
Match: XP_022977505.1 (transcription termination factor MTERF5, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 798.1 bits (2060), Expect = 4.1e-227
Identity = 411/456 (90.13%), Postives = 431/456 (94.52%), Query Frame = 0 

Query: 28  RSSVLYRVQLSFPRKLFSSQAKFDSEI-DGSVNLKVVSPTLLTAEKEEAKAVLTLFLKKQ 87
           +S VLYRVQ+SF RKLFS +AKFDSEI DGSVNLKVVSP LLTAEKEEAKAVLTLFLKKQ
Sbjct: 24  QSFVLYRVQVSFSRKLFSCRAKFDSEIDDGSVNLKVVSPALLTAEKEEAKAVLTLFLKKQ 83

Query: 88  GLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLLEEHG 147
           GLSNAIAARTINKSDLFI+HL+LRLHLIHKSRYLVGRELTTLEIRDALNPYLESL EEHG
Sbjct: 84  GLSNAIAARTINKSDLFINHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHG 143

Query: 148 TLLVHAVENFPNPPIKEKTSTTVPVSNSTIDTKKLKAISRVSEVGPTGKLRPQILYLIEH 207
           T LVHAVENFPN  IKEKT+TTVPV NSTIDTKKL+A+SRVSE+GPTGKLRPQILYL+EH
Sbjct: 144 THLVHAVENFPNRSIKEKTTTTVPVLNSTIDTKKLRAVSRVSELGPTGKLRPQILYLMEH 203

Query: 208 GLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTE 267
           GL LEQIKEITR+FPAFAYYSLEGKIKPVIEF LDLGVPKSDIP+ILNKRPQLCGISLTE
Sbjct: 204 GLKLEQIKEITRKFPAFAYYSLEGKIKPVIEFFLDLGVPKSDIPIILNKRPQLCGISLTE 263

Query: 268 NLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDFLYEMGLSEESVGKILNR 327
           NLKPTM+FLE LGVDKKQWAKVIYRFPALLTYSKQKVE T  FLYEMG+SEESVGKIL R
Sbjct: 264 NLKPTMLFLETLGVDKKQWAKVIYRFPALLTYSKQKVETTTGFLYEMGISEESVGKILTR 323

Query: 328 WPNIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEANLKPVTQFFLERGYSM 387
            P+IISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIE NLKPVTQFFLERGYSM
Sbjct: 324 CPHIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIEGNLKPVTQFFLERGYSM 383

Query: 388 EDVGTMSSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAI 447
           EDVGTM SRYGALYTFSLAEN+VPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAI
Sbjct: 384 EDVGTMISRYGALYTFSLAENIVPKWDFFLTMEYSKSELIKFPQYFGYSLEGRIKPRYAI 443

Query: 448 MKESQVTLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           MK+S V LLLNQLLTLS++DF  A+KKKMNKLLP N
Sbjct: 444 MKKSGVMLLLNQLLTLSDTDFDTALKKKMNKLLPKN 479

[Close]
BLAST of Lcy04g013940 vs. TAIR 10
Match: AT4G14605.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 589.3 bits (1518), Expect = 2.7e-168
Identity = 301/473 (63.64%), Postives = 375/473 (79.28%), Query Frame = 0 

Query: 18  LLSMLENGSFRSSVLYRVQLSFPRKLFSSQAKFDSEIDGSVNLKVVSPTLLTAEKEEAKA 77
           L++  E  S R+ + +  +LSF ++    + K   E     + + V P L+ AEKEEAKA
Sbjct: 14  LVARREKPSTRAQLWFTGRLSFRQETNGIRLKNRVEF----SPRPVPPNLIAAEKEEAKA 73

Query: 78  VLTLFLKKQGLSNAIAARTINKSDLFIDHLVLRLHLIHKSRYLVGRELTTLEIRDALNPY 137
           VLTLF KKQGLSN++++R INKSDLFIDHLV RLH +HK+RYLVGRELTTLEIRD+L PY
Sbjct: 74  VLTLFFKKQGLSNSLSSRLINKSDLFIDHLVSRLHSVHKARYLVGRELTTLEIRDSLIPY 133

Query: 138 LESLLEEHGTLLVHAVENFPNPPIKEKTSTTVPVS--------NSTIDTKKLKAISRVSE 197
           LE L EEHG LL   V +FP+PP + +   + PVS        +S  DT+KL+A+SRVSE
Sbjct: 134 LEQLHEEHGDLLAELVVSFPDPPAEPRLVASSPVSVLPPRGDTDSAADTRKLRAVSRVSE 193

Query: 198 VGPTGKLRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDI 257
           +   G LRPQ LYL++ GLNLEQIK ITR+F AF YYSL+GKIKPV+EFLLDLG+PKSDI
Sbjct: 194 LDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDI 253

Query: 258 PVILNKRPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQKVEATIDF 317
           P IL KRPQ+CGISLT+NLKPTM FLE LG+DK QWAK+I RFPA+LTYS+QK+ +T++F
Sbjct: 254 PTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQKLTSTVEF 313

Query: 318 LYEMGLSEESVGKILNRWPNIISYSVEEKLRPTAEYFHSLGVDVAVLLYRSPQTFGLSIE 377
           L + GL+EE +G+IL R PNI+SYSVE+KLRPT EYF SL VDVAVLL+R PQTFGLSIE
Sbjct: 314 LSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIE 373

Query: 378 ANLKPVTQFFLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFLTMEYSKSELIKFP 437
           +NLKPVT+FFLE+G+ ++++G M SRYGALYTFSL EN++PKWD+F TM+Y KSEL+KFP
Sbjct: 374 SNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQTMDYPKSELVKFP 433

Query: 438 QYFGYSLEGRIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVKKKMNKLLPNN 483
           Q+FGYSL+ RIKPRY +++ S V LLLNQ+L+LS  +F K VKKKM KL+ NN
Sbjct: 434 QFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKLVSNN 482

[Close]
BLAST of Lcy04g013940 vs. TAIR 10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-28
Identity = 74/289 (25.61%), Postives = 153/289 (52.94%), Query Frame = 0 

Query: 195 KLRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILN 254
           +++ ++ + ++ G+N      +   +P    +     ++  I +L + G+   ++  +L 
Sbjct: 315 EVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLA 374

Query: 255 KRPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYSKQK-VEATIDFLYEM 314
            +P L G S+ E  KP + +   LG+ K+   +++   P L     +K +   + FL EM
Sbjct: 375 YKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEM 434

Query: 315 GLSEESVGKILNRWPNIISYSVEEKLRPTAEYFHS-LGV---DVAVLLYRSPQTFGLSIE 374
           G+  E++G +L ++P++++ S+ +K+RP   +  +  GV   D+  ++   P   G SI 
Sbjct: 435 GIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIG 494

Query: 375 ANLKPVTQFFLERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFF-LTMEYSKSELIKF 434
             L+P  ++++  G     +G M + +  L  +++ +NL PK+ +   TM     +LI+F
Sbjct: 495 TKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEF 554

Query: 435 PQYFGYSLEGRIKPRYAIMKESQVTLLLNQLLTLSESDFVKAVKKKMNK 478
           P++F YSLE RI PR+ IM E++V   L  +L  ++ +F + V+ K+ +
Sbjct: 555 PRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVRDKVER 602

[Close]
BLAST of Lcy04g013940 vs. TAIR 10
Match: AT2G44020.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-27
Identity = 82/314 (26.11%), Postives = 150/314 (47.77%), Query Frame = 0 

Query: 196 LRPQILYLIEHGLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNK 255
           L P + YL + G++  ++ E  + +P   + S+  ++ PV++FL  L V K D+  +L K
Sbjct: 144 LIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVLMK 203

Query: 256 RPQLCGISLTENLKPTMIFLENLGVDKKQWAKVIYRFPALLTYS-KQKVEATIDFLYEMG 315
            P+L G  L   +  ++ +L ++GV  +    ++ ++P LL       ++  +D+L  +G
Sbjct: 204 YPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIG 263

Query: 316 LSEESVGKILNRWPNIISYSVEEKLRPTAEYFHSLGVD---VAVLLYRSPQTFGLSIEAN 375
           L ++ V ++L +   I+ Y++EE ++P  +   S GV    + +L+ + PQ  GL ++A 
Sbjct: 264 LPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQILGLPVKAK 323

Query: 376 -------------------------------------LKPVTQFFLERGYSMEDVGTMSS 435
                                                +KP+ +F L R + +ED+  M  
Sbjct: 324 MSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKPI-EFLLGRAFQVEDIAKMVV 383

Query: 436 RYGALYTFSLAENLVPKWDFFLT-MEYSKSELIKFPQYFGYSLEGRIKPRYAIMKESQVT 468
           R   +   S  E +   + F+ T M     EL+++P+YF YSLE RIKPRY  ++   + 
Sbjct: 384 RCPQILC-SRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKGIR 443

[Close]
BLAST of Lcy04g013940 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 114.4 bits (285), Expect = 2.6e-25
Identity = 71/268 (26.49%), Postives = 135/268 (50.37%), Query Frame = 0 

Query: 207 GLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTE 266
           G+   ++  I  R P      L+ ++ P++E L  LG    ++   + K P +   S+ E
Sbjct: 53  GIQERKLPYIVSRCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEE 112

Query: 267 NLKPTMIFLENLGVDKKQWAKVIYRFPALLTYS-KQKVEATIDFLYEMGLSEES-VGKIL 326
            L P + F + LGV + Q  K+I   P L++YS   K+   + FL  +GL ++  +GK+L
Sbjct: 113 KLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVL 172

Query: 327 NRWPNIISYSVEEKLRPTAEYFHS---LGVD-VAVLLYRSPQTFGLSIEANLKPVTQFFL 386
            + P ++ YSV+++LRPT E+  S   L  D +  ++   PQ     +   LKP   +  
Sbjct: 173 VKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLK 232

Query: 387 ERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFL-TMEYSKSELIKFPQYFGYSLEGR 446
           E G+    + TM + Y  +   S+  +L P+  F +  M     E+  +P++F + L+ +
Sbjct: 233 ECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKK 292

Query: 447 IKPRYAIMKESQVTLLLNQLLTLSESDF 468
           ++ R+ ++K++ +   L ++L  +   F
Sbjct: 293 VESRFKLVKKNNIDCSLREMLDCNTKKF 320

[Close]
BLAST of Lcy04g013940 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 114.4 bits (285), Expect = 2.6e-25
Identity = 71/268 (26.49%), Postives = 135/268 (50.37%), Query Frame = 0 

Query: 207 GLNLEQIKEITRRFPAFAYYSLEGKIKPVIEFLLDLGVPKSDIPVILNKRPQLCGISLTE 266
           G+   ++  I  R P      L+ ++ P++E L  LG    ++   + K P +   S+ E
Sbjct: 53  GIQERKLPYIVSRCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEE 112

Query: 267 NLKPTMIFLENLGVDKKQWAKVIYRFPALLTYS-KQKVEATIDFLYEMGLSEES-VGKIL 326
            L P + F + LGV + Q  K+I   P L++YS   K+   + FL  +GL ++  +GK+L
Sbjct: 113 KLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVL 172

Query: 327 NRWPNIISYSVEEKLRPTAEYFHS---LGVD-VAVLLYRSPQTFGLSIEANLKPVTQFFL 386
            + P ++ YSV+++LRPT E+  S   L  D +  ++   PQ     +   LKP   +  
Sbjct: 173 VKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLK 232

Query: 387 ERGYSMEDVGTMSSRYGALYTFSLAENLVPKWDFFL-TMEYSKSELIKFPQYFGYSLEGR 446
           E G+    + TM + Y  +   S+  +L P+  F +  M     E+  +P++F + L+ +
Sbjct: 233 ECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKK 292

Query: 447 IKPRYAIMKESQVTLLLNQLLTLSESDF 468
           ++ R+ ++K++ +   L ++L  +   F
Sbjct: 293 VESRFKLVKKNNIDCSLREMLDCNTKKF 320

The following BLAST results are available for this feature:
BLAST of Lcy04g013940 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JVI33.8e-16763.64Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O... [more]
F4IHL32.7e-2725.61Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O... [more]
Q9SZL63.6e-2426.49Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop... [more]
Q6AUK66.8e-2325.44Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja... [more]
B6TGN41.5e-2224.38Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT... [more]
BLAST of Lcy04g013940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BZ401.4e-23393.76transcription termination factor MTERF5, chloroplastic OS=Momordica charantia OX... [more]
A0A6J1IMI22.0e-22790.13transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucurb... [more]
A0A6J1IRJ64.9e-22689.93transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucurb... [more]
A0A6J1IIQ01.9e-22590.44transcription termination factor MTERF5, chloroplastic-like isoform X4 OS=Cucurb... [more]
A0A6J1GGK13.2e-22590.44transcription termination factor MTERF5, chloroplastic isoform X2 OS=Cucurbita m... [more]
BLAST of Lcy04g013940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038883229.13.2e-23590.95transcription termination factor MTERF5, chloroplastic isoform X2 [Benincasa his... [more]
XP_022133428.13.0e-23393.76transcription termination factor MTERF5, chloroplastic [Momordica charantia] >XP... [more]
XP_038883227.12.8e-23189.15transcription termination factor MTERF5, chloroplastic isoform X1 [Benincasa his... [more]
XP_038883230.13.4e-22991.54transcription termination factor MTERF5, chloroplastic isoform X3 [Benincasa his... [more]
XP_022977505.14.1e-22790.13transcription termination factor MTERF5, chloroplastic-like isoform X2 [Cucurbit... [more]
BLAST of Lcy04g013940 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G14605.12.7e-16863.64Mitochondrial transcription termination factor family protein [more]
AT2G21710.11.9e-2825.61Mitochondrial transcription termination factor family protein [more]
AT2G44020.11.6e-2726.11Mitochondrial transcription termination factor family protein [more]
AT4G38160.12.6e-2526.49Mitochondrial transcription termination factor family protein [more]
AT4G38160.22.6e-2526.49Mitochondrial transcription termination factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 178..209
e-value: 2200.0
score: 1.2
coord: 286..316
e-value: 5.6E-5
score: 32.5
coord: 390..421
e-value: 1.1
score: 18.3
coord: 250..281
e-value: 0.0034
score: 26.6
coord: 321..352
e-value: 1.8E-6
score: 37.5
coord: 214..245
e-value: 4.3E-4
score: 29.6
coord: 354..385
e-value: 0.039
score: 23.1
coord: 422..453
e-value: 0.067
score: 22.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 65..311
e-value: 4.7E-18
score: 65.2
coord: 299..467
e-value: 8.0E-32
score: 110.4
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 32..479
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 253..477
e-value: 3.3E-51
score: 176.0
NoneNo IPR availablePANTHERPTHR13068:SF9TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTICcoord: 32..479

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g013940.1Lcy04g013940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003690 double-stranded DNA binding