Lcy04g013630 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g013630
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	tRNA(His) guanylyltransferase
Location	Chr04: 45713772 .. 45715615 (+)
RNA-Seq Expression	Lcy04g013630
Synteny	Lcy04g013630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATAGTGAGTATGAGTATGTGAAGTTGTTCGAAGTTGATGATGAGGTGATGCTGCCCAATCTGATCGTCGTTCGGGTTGATGGGCTCGACTTTCGTAGGTTTTCTCACTTAGCAATTCAATTTTGGCAATATTAAACTTTCAAGATATCGTGCCTCGTGATTGTGCCAAGTGTGAGAGCATTGAATTTCTGTGGCCTTTACTAATCTTCTCTAATTCATTCTTGATGCACTTTCTATGGGTTTATATCAATATCTTCAAAGCATAAGGTGTACACTAACTAAGACTATAAGCTTCTTGCTTGCCTGGAGGTGAGAGGAATATATACATCACTAGGTGAGGTGAGGCATTTAAACTGAAAATAGGAATGCATTATTACACAAGATGAAATTTATGATGGACGTGAATAAGATGATATTTGGTCTGGTGGTCAATTTAGAGTCAATATAAATAATAAAGGGTTTAGAGGAAATAGATTCAAGTCATGGTGGCCACCTACCTAAGATTTAATTTTCTATGACATTGATGTGTCCTGTATTTTCAAGTGCTGGAGAATGAAAAAAGAATAGATTGATTGAGTATATAGCGTCAGTGCTAAGGGATAAACTGCGCTATAAACATTCCATGGGACTGTCATAAGCTTAAGTAAAGGATTTTTGTATATGTGATGAGTGCCCTTTTGTTTCTTGTCCATCGCAATATTGCTCAGAATCTTTTTCCCTTCTTTGGCAGATTCTCTGAAGTTCATGGGTTTGTGAAGCCAAATGACGAAAATGTTTTAAAGTTGATGAATTATTGTGCAATCGCCACAATGGAAATGTTTTCAGATGTAGTATTTTCATATGGATTTAGTGATGAGTACAGGTGTTCAGTTAGTCAATTATTATGTCATCTCCACCCTTTTAACTATTTATTAGCAAGTTTGTTGTCTCTTTCTTACATTACATCAATTATTGATATATTCTTTGTTAACAGTTTTATCTTTAAAATGACATCCAAGTTTTACCAAAGGCGTGCCAGATTTCTCCATTGATTTATGATCCTCTGTTTTGATGTTTTTATGTCATTGTTCCCCTTGAATTCTATGTACATGTGATGTAGAAAAAATCCCTTTATTCTTTTTTGCTGAGCTGATGCATGGGGGTTGTTTTTGTCATGATATTAATATCGATACTTTTTTTTTCCTTCTTTTCTTTCTTTCTTTTCTGGGTCAGAGCCAATAATTTTGATTTTTCTAAGATTTGAAAATTAGATTTTTATCTAATTAAGTTTTAGGATTTGAGATTTATAAATAAAATGAAGAATTTTTTTTATTAGAATTTGAATGGTAGATGTTTCTTATCGTTATAATTTCTGTTATAAATTCAATGTTCCTTTCGTTTATTAGTTTTCTTCTTTCGTTGAAATTTATGTTGATGTGCTTACAAATTGGGCTTATGCAACAAATTATATTCGCTCGTTGTATGTATATATAACAAAATGGCCAGAATTCTTTCCTCAGCAGAACTTGAGCTACCCACCTTCATTTCGTGCACGTGTAGTATGTTGTGCATCTATAGAAGTTCTTCAAGCATATCTTGCATGGAGACAACAGTTCTGTAAGTGGTTGCCTTTTGGTTTGCAAATCCATAGTATTCCTAGATCTTGCAGGACCTACAATGAAGTTGTAAGTTTTGTTTGATCTTCAAATACCTTCTTTTGTTGGCTTGGCAGGCAGAATGTCCTTATTTAAACTTTCCAAATTCACCTTTTTCAGGTCATATCAGTAACTTGGACAATACATGCTTTTGGAAGCTGGTCGAGTGTGGGAAGACAGACAGGGAAGCCCATGATTTTCTGA

mRNA sequence

ATGGCAAATAGTGAGTATGAGTATGTGAAGTTGTTCGAAGTTGATGATGAGGTGATGCTGCCCAATCTGATCGTCGTTCGGAACTTGAGCTACCCACCTTCATTTCGTGCACGTGTAGTATGTTGTGCATCTATAGAAGTTCTTCAAGCATATCTTGCATGGAGACAACAGTTCTGTAAGTGGTTGCCTTTTGGTTTGCAAATCCATAGTATTCCTAGATCTTGCAGGACCTACAATGAAGTTGTCATATCAGTAACTTGGACAATACATGCTTTTGGAAGCTGGTCGAGTGTGGGAAGACAGACAGGGAAGCCCATGATTTTCTGA

Coding sequence (CDS)

ATGGCAAATAGTGAGTATGAGTATGTGAAGTTGTTCGAAGTTGATGATGAGGTGATGCTGCCCAATCTGATCGTCGTTCGGAACTTGAGCTACCCACCTTCATTTCGTGCACGTGTAGTATGTTGTGCATCTATAGAAGTTCTTCAAGCATATCTTGCATGGAGACAACAGTTCTGTAAGTGGTTGCCTTTTGGTTTGCAAATCCATAGTATTCCTAGATCTTGCAGGACCTACAATGAAGTTGTCATATCAGTAACTTGGACAATACATGCTTTTGGAAGCTGGTCGAGTGTGGGAAGACAGACAGGGAAGCCCATGATTTTCTGA

Protein sequence

MANSEYEYVKLFEVDDEVMLPNLIVVRNLSYPPSFRARVVCCASIEVLQAYLAWRQQFCKWLPFGLQIHSIPRSCRTYNEVVISVTWTIHAFGSWSSVGRQTGKPMIF

Homology

[Close]

BLAST of Lcy04g013630 vs. ExPASy Swiss-Prot
Match: F4ISV6 (tRNA(His) guanylyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=THG2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-07
Identity = 43/151 (28.48%), Postives = 50/151 (33.11%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVK FEV+DEVM PNLI++R                                 
Sbjct: 1   MANSKYEYVKSFEVEDEVMFPNLIIIRIDGRDFSRFSQVHKFEKPNDETSLNLMNSCASS 60

[Close]

BLAST of Lcy04g013630 vs. ExPASy Swiss-Prot
Match: F4IRQ5 (tRNA(His) guanylyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=THG1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-07
Identity = 45/151 (29.80%), Postives = 51/151 (33.77%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVV---------------------------------- 60
           MANS+YEYVK FE++DEVMLPNL+VV                                  
Sbjct: 48  MANSKYEYVKSFELEDEVMLPNLMVVRIDGRDFSRFSQVHEFEKPNDETALNLMNSCSAA 107

[Close]

BLAST of Lcy04g013630 vs. ExPASy TrEMBL
Match: A0A0A0KFW7 (tRNA(His) guanylyltransferase OS=Cucumis sativus OX=3659 GN=Csa_6G486910 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 56/151 (37.09%), Postives = 57/151 (37.75%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVKLFEVDDEVMLPNLIVVR                                 
Sbjct: 1   MANSKYEYVKLFEVDDEVMLPNLIVVRVDGLDFRRFSEVHGFVKPNDEKALELMNCCAMA 60

[Close]

BLAST of Lcy04g013630 vs. ExPASy TrEMBL
Match: A0A6J1GED7 (tRNA(His) guanylyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111453416 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-10
Identity = 54/151 (35.76%), Postives = 57/151 (37.75%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVKLFEVDDEVM PNLIVVR                                 
Sbjct: 1   MANSKYEYVKLFEVDDEVMPPNLIVVRVEGLDFPRFSEVHGFVKPNDEKALELMNCCAMA 60

[Close]

BLAST of Lcy04g013630 vs. ExPASy TrEMBL
Match: A0A6J1BSQ5 (tRNA(His) guanylyltransferase OS=Momordica charantia OX=3673 GN=LOC111005370 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.6e-10
Identity = 53/151 (35.10%), Postives = 55/151 (36.42%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVKLFEVDDEVMLPNLIVVR                                 
Sbjct: 1   MANSKYEYVKLFEVDDEVMLPNLIVVRVYGLDFRRFSEVHGFVKPNDENAVKLMNHCAMA 60

[Close]

BLAST of Lcy04g013630 vs. ExPASy TrEMBL
Match: A0A6J1IJJ9 (tRNA(His) guanylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111478015 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.6e-10
Identity = 53/151 (35.10%), Postives = 57/151 (37.75%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVKLFEVDDEVM PNLIVVR                                 
Sbjct: 1   MANSKYEYVKLFEVDDEVMPPNLIVVRVEGLDFPRFSEVHGFVKPNDEKALELMNCCAMA 60

[Close]

BLAST of Lcy04g013630 vs. ExPASy TrEMBL
Match: A0A103XE31 (tRNA(His) guanylyltransferase OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008976 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.6e-10
Identity = 41/92 (44.57%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 1  MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
          MANS+YEYVK FE +DE+M PNLIVVR                                 
Sbjct: 1  MANSKYEYVKSFENEDEMMYPNLIVVRIDGRNFESKMLSLIVSFFASLYVAKWREFFPTK 60

[Close]

BLAST of Lcy04g013630 vs. NCBI nr
Match: XP_038883678.1 (tRNA(His) guanylyltransferase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 57/136 (41.91%), Postives = 58/136 (42.65%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVKLFEVDDEVMLPNLIVVR                                 
Sbjct: 1   MANSKYEYVKLFEVDDEVMLPNLIVVRVDGLDFRSFSEVHGFVKPNDEKALELMNCCAMS 60

[Close]

BLAST of Lcy04g013630 vs. NCBI nr
Match: XP_038883677.1 (tRNA(His) guanylyltransferase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 57/151 (37.75%), Postives = 58/151 (38.41%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVKLFEVDDEVMLPNLIVVR                                 
Sbjct: 1   MANSKYEYVKLFEVDDEVMLPNLIVVRVDGLDFRSFSEVHGFVKPNDEKALELMNCCAMS 60

[Close]

BLAST of Lcy04g013630 vs. NCBI nr
Match: XP_004141969.1 (tRNA(His) guanylyltransferase 1 isoform X1 [Cucumis sativus] >KGN48418.1 hypothetical protein Csa_004227 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-11
Identity = 56/151 (37.09%), Postives = 57/151 (37.75%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVKLFEVDDEVMLPNLIVVR                                 
Sbjct: 1   MANSKYEYVKLFEVDDEVMLPNLIVVRVDGLDFRRFSEVHGFVKPNDEKALELMNCCAMA 60

[Close]

BLAST of Lcy04g013630 vs. NCBI nr
Match: XP_039049781.1 (tRNA(His) guanylyltransferase 2-like isoform X3 [Hibiscus syriacus])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 45/107 (42.06%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVK FEV+DE+M PNLIV+R                                 
Sbjct: 1   MANSKYEYVKSFEVEDEIMPPNLIVIRIDGRDFRSFVLKKTSKFYQRRSSKISSVIVSCF 60

[Close]

BLAST of Lcy04g013630 vs. NCBI nr
Match: KAG6604248.1 (tRNA(His) guanylyltransferase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 7.1e-10
Identity = 54/151 (35.76%), Postives = 57/151 (37.75%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVKLFEVDDEVM PNLIVVR                                 
Sbjct: 1   MANSKYEYVKLFEVDDEVMPPNLIVVRVEGLDFPRFSEVHGFVKPNDEKALELMNCCAIA 60

[Close]

BLAST of Lcy04g013630 vs. TAIR 10
Match: AT2G32320.1 (tRNAHis guanylyltransferase )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 43/151 (28.48%), Postives = 50/151 (33.11%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVK FEV+DEVM PNLI++R                                 
Sbjct: 1   MANSKYEYVKSFEVEDEVMFPNLIIIRIDGRDFSRFSQVHKFEKPNDETSLNLMNSCASS 60

[Close]

BLAST of Lcy04g013630 vs. TAIR 10
Match: AT2G32320.2 (tRNAHis guanylyltransferase )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 43/151 (28.48%), Postives = 50/151 (33.11%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVK FEV+DEVM PNLI++R                                 
Sbjct: 1   MANSKYEYVKSFEVEDEVMFPNLIIIRIDGRDFSRFSQVHKFEKPNDETSLNLMNSCASS 60

[Close]

BLAST of Lcy04g013630 vs. TAIR 10
Match: AT2G32320.3 (tRNAHis guanylyltransferase )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 43/151 (28.48%), Postives = 50/151 (33.11%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVVR--------------------------------- 60
           MANS+YEYVK FEV+DEVM PNLI++R                                 
Sbjct: 1   MANSKYEYVKSFEVEDEVMFPNLIIIRIDGRDFSRFSQVHKFEKPNDETSLNLMNSCASS 60

[Close]

BLAST of Lcy04g013630 vs. TAIR 10
Match: AT2G31580.1 (tRNAHis guanylyltransferase )

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-08
Identity = 45/151 (29.80%), Postives = 51/151 (33.77%), Query Frame = 0


Query: 1   MANSEYEYVKLFEVDDEVMLPNLIVV---------------------------------- 60
           MANS+YEYVK FE++DEVMLPNL+VV                                  
Sbjct: 48  MANSKYEYVKSFELEDEVMLPNLMVVRIDGRDFSRFSQVHEFEKPNDETALNLMNSCSAA 107

The following BLAST results are available for this feature:

BLAST of Lcy04g013630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4ISV6	4.5e-07	28.48	tRNA(His) guanylyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=THG2 PE=1 SV=...	[more]
F4IRQ5	5.8e-07	29.80	tRNA(His) guanylyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=THG1 PE=1 SV=...	[more]

BLAST of Lcy04g013630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFW7	3.1e-11	37.09	tRNA(His) guanylyltransferase OS=Cucumis sativus OX=3659 GN=Csa_6G486910 PE=3 SV...	[more]
A0A6J1GED7	3.4e-10	35.76	tRNA(His) guanylyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111453416 PE=3...	[more]
A0A6J1BSQ5	7.6e-10	35.10	tRNA(His) guanylyltransferase OS=Momordica charantia OX=3673 GN=LOC111005370 PE=...	[more]
A0A6J1IJJ9	7.6e-10	35.10	tRNA(His) guanylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111478015 PE=3 S...	[more]
A0A103XE31	7.6e-10	44.57	tRNA(His) guanylyltransferase OS=Cynara cardunculus var. scolymus OX=59895 GN=Cc...	[more]

BLAST of Lcy04g013630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883678.1	1.4e-13	41.91	tRNA(His) guanylyltransferase 1-like isoform X2 [Benincasa hispida]	[more]
XP_038883677.1	7.6e-12	37.75	tRNA(His) guanylyltransferase 1-like isoform X1 [Benincasa hispida]	[more]
XP_004141969.1	6.4e-11	37.09	tRNA(His) guanylyltransferase 1 isoform X1 [Cucumis sativus] >KGN48418.1 hypothe...	[more]
XP_039049781.1	1.1e-10	42.06	tRNA(His) guanylyltransferase 2-like isoform X3 [Hibiscus syriacus]	[more]
KAG6604248.1	7.1e-10	35.76	tRNA(His) guanylyltransferase 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy04g013630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32320.1	3.2e-08	28.48	tRNAHis guanylyltransferase	[more]
AT2G32320.2	3.2e-08	28.48	tRNAHis guanylyltransferase	[more]
AT2G32320.3	3.2e-08	28.48	tRNAHis guanylyltransferase	[more]
AT2G31580.1	4.1e-08	29.80	tRNAHis guanylyltransferase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038469	tRNAHis guanylyltransferase Thg1 superfamily	GENE3D	3.30.70.3000		coord: 27..91 e-value: 2.0E-6 score: 29.2
IPR007537	tRNAHis guanylyltransferase Thg1	PANTHER	PTHR12729	UNCHARACTERIZED	coord: 1..27
IPR007537	tRNAHis guanylyltransferase Thg1	PANTHER	PTHR12729	UNCHARACTERIZED	coord: 28..60
None	No IPR available	PANTHER	PTHR12729:SF6	TRNA(HIS) GUANYLYLTRANSFERASE-RELATED	coord: 1..27
None	No IPR available	PANTHER	PTHR12729:SF6	TRNA(HIS) GUANYLYLTRANSFERASE-RELATED	coord: 28..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g013630.1	Lcy04g013630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006400	tRNA modification
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008193	tRNA guanylyltransferase activity