Lcy04g012280 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g012280
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 44046956 .. 44047144 (-)
RNA-Seq ExpressionLcy04g012280
SyntenyLcy04g012280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTGTGGCTGAACCCTCTCCCGCGCGGGCAGCTAGCAACTAGCGCCTGCTTCTTCGTCGCCGGAGTCTCCTTCTTCGCCGTCGGAGCTTACCTCTCTTTCGTCAACATCGGCCCTCAGCAAGCTCGAACCAAAGCTCGTGCCGATTTTGTCAGGGAGCGGTTGAGAAAGCGTCACCACGATTAA

mRNA sequence

ATGGGACTGTGGCTGAACCCTCTCCCGCGCGGGCAGCTAGCAACTAGCGCCTGCTTCTTCGTCGCCGGAGTCTCCTTCTTCGCCGTCGGAGCTTACCTCTCTTTCGTCAACATCGGCCCTCAGCAAGCTCGAACCAAAGCTCGTGCCGATTTTGTCAGGGAGCGGTTGAGAAAGCGTCACCACGATTAA

Coding sequence (CDS)

ATGGGACTGTGGCTGAACCCTCTCCCGCGCGGGCAGCTAGCAACTAGCGCCTGCTTCTTCGTCGCCGGAGTCTCCTTCTTCGCCGTCGGAGCTTACCTCTCTTTCGTCAACATCGGCCCTCAGCAAGCTCGAACCAAAGCTCGTGCCGATTTTGTCAGGGAGCGGTTGAGAAAGCGTCACCACGATTAA

Protein sequence

MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRHHD
Homology
BLAST of Lcy04g012280 vs. ExPASy TrEMBL
Match: A0A6J1BSA7 (uncharacterized protein LOC111005249 OS=Momordica charantia OX=3673 GN=LOC111005249 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.5e-23
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRH 60
          MGLWL+PLPRGQLATSACFFVAGVSFFAVGAY S++NI PQQARTKAR DFV+ERLRKRH
Sbjct: 1  MGLWLDPLPRGQLATSACFFVAGVSFFAVGAYFSYLNIAPQQARTKARDDFVKERLRKRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of Lcy04g012280 vs. ExPASy TrEMBL
Match: A0A6J1HI96 (uncharacterized protein LOC111463226 OS=Cucurbita moschata OX=3662 GN=LOC111463226 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.7e-23
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRH 60
          MG WLNPLPRGQL TSAC+FVAG S FAVGAYLS+VNIGPQQARTKAR+DFVRERLR+RH
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of Lcy04g012280 vs. ExPASy TrEMBL
Match: A0A5D3C6A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001620 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.4e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRH 60
          MGLWLNPLPRGQL TSACFF+ GVS FA GA+LS++NIGPQQARTKAR DFVRERLRKRH
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

BLAST of Lcy04g012280 vs. ExPASy TrEMBL
Match: A0A1S4E3S6 (uncharacterized protein LOC103500918 OS=Cucumis melo OX=3656 GN=LOC103500918 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.4e-21
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRH 60
          MGLWLNPLPRGQL TSACFF+ GVS FA GA+LS++NIGPQQARTKAR DFVRERLRKRH
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

BLAST of Lcy04g012280 vs. ExPASy TrEMBL
Match: A0A0A0KEZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454330 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.2e-17
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKR 60
          MGLWLNPLP GQL  SAC F+ G+S FA GA+LS++NIGPQQARTKAR DFV+ERLR+R
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 59

BLAST of Lcy04g012280 vs. NCBI nr
Match: XP_038880929.1 (uncharacterized protein LOC120072605 [Benincasa hispida] >XP_038880930.1 uncharacterized protein LOC120072605 [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 8.4e-24
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRH 60
          MGLWLNPLPRGQLATSACFFVAGVSFFA GAYLSF+NI PQQARTKAR DFV+ERLRKRH
Sbjct: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of Lcy04g012280 vs. NCBI nr
Match: XP_023517718.1 (uncharacterized protein LOC111781390 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRH 60
          MGLWLNPLPRGQL TSAC+FVAG SFF VGAYLS+VN+GPQQARTKAR+DFVRERLR+RH
Sbjct: 1  MGLWLNPLPRGQLGTSACYFVAGFSFFVVGAYLSYVNVGPQQARTKARSDFVRERLRRRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of Lcy04g012280 vs. NCBI nr
Match: XP_022132375.1 (uncharacterized protein LOC111005249 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 7.1e-23
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRH 60
          MGLWL+PLPRGQLATSACFFVAGVSFFAVGAY S++NI PQQARTKAR DFV+ERLRKRH
Sbjct: 1  MGLWLDPLPRGQLATSACFFVAGVSFFAVGAYFSYLNIAPQQARTKARDDFVKERLRKRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of Lcy04g012280 vs. NCBI nr
Match: XP_022962859.1 (uncharacterized protein LOC111463226 [Cucurbita moschata])

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRKRH 60
          MG WLNPLPRGQL TSAC+FVAG S FAVGAYLS+VNIGPQQARTKAR+DFVRERLR+RH
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of Lcy04g012280 vs. NCBI nr
Match: KAG7027182.1 (hypothetical protein SDJN02_11193, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 55/75 (73.33%), Postives = 59/75 (78.67%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQART-------------KA 60
          MG WLNPLPRGQL TSAC+FVAG SFFAVGAYLS+VNIGPQQART             KA
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSFFAVGAYLSYVNIGPQQARTKARSDFSNIDILDKA 60

Query: 61 RADFVRERLRKRHHD 63
          R+DFVRERLR+RHHD
Sbjct: 61 RSDFVRERLRRRHHD 75

BLAST of Lcy04g012280 vs. TAIR 10
Match: AT3G11591.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 33/52 (63.46%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 7  PLPRGQLATSACFFVAGVSFFAVGAYLSFVNIGPQQARTKARADFVRERLRK 59
          P  R QL  S  FF AGVS F  GAYLS  NI PQQAR KAR DFV++R+RK
Sbjct: 8  PPTRRQLVVSVGFFAAGVSLFVAGAYLSLANISPQQARVKARNDFVKDRIRK 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BSA73.5e-2388.71uncharacterized protein LOC111005249 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1HI967.7e-2387.10uncharacterized protein LOC111463226 OS=Cucurbita moschata OX=3662 GN=LOC1114632... [more]
A0A5D3C6A09.4e-2185.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E3S69.4e-2185.00uncharacterized protein LOC103500918 OS=Cucumis melo OX=3656 GN=LOC103500918 PE=... [more]
A0A0A0KEZ98.2e-1774.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038880929.18.4e-2491.94uncharacterized protein LOC120072605 [Benincasa hispida] >XP_038880930.1 unchara... [more]
XP_023517718.12.5e-2387.10uncharacterized protein LOC111781390 [Cucurbita pepo subsp. pepo][more]
XP_022132375.17.1e-2388.71uncharacterized protein LOC111005249 [Momordica charantia][more]
XP_022962859.11.6e-2287.10uncharacterized protein LOC111463226 [Cucurbita moschata][more]
KAG7027182.11.9e-2073.33hypothetical protein SDJN02_11193, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT3G11591.11.3e-1163.46unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g012280.1Lcy04g012280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane