Lcy04g011630 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g011630
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	60S ribosomal protein L24-like
Location	Chr04: 43353824 .. 43355564 (+)
RNA-Seq Expression	Lcy04g011630
Synteny	Lcy04g011630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGGGTTTCGTCGAGCACGAAGAAGAAGCGGAGGAGTAACCACAGCAGCCGCCACCATGGTGTTGAAGTGAGTCTCTATCTCCGCTCTTTCTGATTCATTGTTGAATTGATTTCATTTATTTTACTGTATTCCTGTCAAGGTTTTCTTCTAGTCGATGATTGCATCCTGCTATGGCGAAATAGAGCAGAATCGATGTGACTATGTGTGCTATTTAATTAAACTTTCATTTCATTTTCGGTACCTGAAGATGTTTAGCTTCGAAATCTCTAGGTTTTTGTTTGGGTGAATTGGATATGTAGGTCAGTAGTTTTCATTATGATTGATGGGTTTGAAGAAGTAATGGCTTATCCTGCGAGAATGTGAAAACTTGCAATGAGATATGCGTATCTTGTTACTGTTTGATTATGAAATATAATGCTGGTTTTGGCAGGACCGAGCTTTGTCGATTCAGTGGCGCGAAGATATATCCCGGTAAAGGAATCAGATTTGTCCGTGCGGATTCACAGGTAATAAACCTGCGTGGCTGCTGGCTGTGCTGGAGTTGTTACTGGATAATCTATTTTCTTTTCTTGTCTTTTGATATATGCTTACCTGCTATTGCAAACTTCTGGATTCACTAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAACAACATAAGAAGGTAAAAGATCAAATTTAGTGCTGGGATCTTTATTCTTGTTATCCATATTCAAATTCTATCATATCCTGTTATCTGTTGGCTTTGATTATGGATGGGTTATTTTGAAACGGTATGATCTTTCTGTGGTACTCTTGGATCATAATTTTTCAATAACACAAACAACAAAGGTTCTCATGTTTTGTATATTTGTTTTCTGGGAGTACTGACCTAATTATCCACTGGATTATGTCATCTTGGCTCTTATCCATGATTTTAACTAAATAATTGGTGAAAAATTAAATGTTTCTTTTCTTTTCATTCCCGTAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCGACCAAGAAACCTTACTCAAGGTCCATTGTGGGTGCTACATTGGAGGTGATCCAAAAGAAGAGAGCTGAGAAGCCTGAGGTTCGTGATGCTGCTAGAGAAGCAGCCCTTCGGTATGTGATTGTTCTGAGTTTGAATTTTTCTTAATGATATGTATTACCTAATCTTAAGAAAAGCCAAAGTAGACATTTGTATGTTTCTAACCGGCACTGAGTAATTTCTTGATCAATCACAGTTCTTTTGTGTACTTAAACTTTGTTAATTTTTGGGTTGTAGGGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGATGGCCAAAACACAGAAGACACAGAACAAGGCTAACGTTGCCAGGGGAGCTGCACCGAAAGGACCAAAACTTGGTGGTGGCGGCGGTAAACGTTGAACTTTACATGCTGCAAGTGCAAGCTAAGAAGAGTAGTTGTGAGCTTTTATGGTCTTTGAAATAGCGAGCCTGAGTTAAAGATAATGTTTTATTATTTCCAAAATTTTGTATGGATCAATTCTTGTGGTTTACATTTCTTCTTGCAGTTACAAATATGCATTTTTTTTTCCTGTTAATTTACTTGATTATGAATTATAACTTGACTAACAGGGCATAGTTCTTTTGGTTTTTATGAATTTCCA

mRNA sequence

CTAGGGTTTCGTCGAGCACGAAGAAGAAGCGGAGGAGTAACCACAGCAGCCGCCACCATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGCGCGAAGATATATCCCGGTAAAGGAATCAGATTTGTCCGTGCGGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAACAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCGACCAAGAAACCTTACTCAAGGTCCATTGTGGGTGCTACATTGGAGGTGATCCAAAAGAAGAGAGCTGAGAAGCCTGAGGTTCGTGATGCTGCTAGAGAAGCAGCCCTTCGGGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGATGGCCAAAACACAGAAGACACAGAACAAGGCTAACGTTGCCAGGGGAGCTGCACCGAAAGGACCAAAACTTGGTGGTGGCGGCGGTAAACGTTGAACTTTACATGCTGCAAGTGCAAGCTAAGAAGAGTAGTTGTGAGCTTTTATGGTCTTTGAAATAGCGAGCCTGAGTTAAAGATAATGTTTTATTATTTCCAAAATTTTGTATGGATCAATTCTTGTGGTTTACATTTCTTCTTGCAGTTACAAATATGCATTTTTTTTTCCTGTTAATTTACTTGATTATGAATTATAACTTGACTAACAGGGCATAGTTCTTTTGGTTTTTATGAATTTCCA

Coding sequence (CDS)

ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGCGCGAAGATATATCCCGGTAAAGGAATCAGATTTGTCCGTGCGGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAACAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCGACCAAGAAACCTTACTCAAGGTCCATTGTGGGTGCTACATTGGAGGTGATCCAAAAGAAGAGAGCTGAGAAGCCTGAGGTTCGTGATGCTGCTAGAGAAGCAGCCCTTCGGGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGATGGCCAAAACACAGAAGACACAGAACAAGGCTAACGTTGCCAGGGGAGCTGCACCGAAAGGACCAAAACTTGGTGGTGGCGGCGGTAAACGTTGA

Protein sequence

MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR

Homology

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BLAST of Lcy04g011630 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.4e-73
Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGK 164
           KTKDEKKAKKAEV +K QK+Q K NV +GA PKGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of Lcy04g011630 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.5e-70
Identity = 144/160 (90.00%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAA-PKGPKLGG 160
           KTKDEKKAKKAEV  K+QK+Q K ++A+G A PKGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of Lcy04g011630 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 263.1 bits (671), Expect = 2.1e-69
Identity = 139/164 (84.76%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+Q K N+ + AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Lcy04g011630 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.6e-67
Identity = 141/165 (85.45%), Postives = 149/165 (90.30%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVAR-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   KAN  +  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Lcy04g011630 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.6e-67
Identity = 143/165 (86.67%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQ-NKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV  K+QK+Q  K  V +G+  KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]

BLAST of Lcy04g011630 vs. ExPASy TrEMBL
Match: A0A6J1CRP7 (60S ribosomal protein L24-like OS=Momordica charantia OX=3673 GN=LOC111013702 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.5e-78
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRA KKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQNK+NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQNKSNVTRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. ExPASy TrEMBL
Match: A0A5D3C883 (60S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00880 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.7e-77
Identity = 160/164 (97.56%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQ K NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. ExPASy TrEMBL
Match: A0A1S3CH43 (60S ribosomal protein L24 OS=Cucumis melo OX=3656 GN=LOC103500860 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.7e-77
Identity = 160/164 (97.56%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQ K NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. ExPASy TrEMBL
Match: A0A0A0KHD4 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449310 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 159/164 (96.95%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQ K NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. ExPASy TrEMBL
Match: A0A6J1IN14 (60S ribosomal protein L24-like OS=Cucurbita maxima OX=3661 GN=LOC111477918 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.9e-77
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKTQKTQNKANV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. NCBI nr
Match: XP_022143901.1 (60S ribosomal protein L24-like [Momordica charantia])

HSP 1 Score: 300.4 bits (768), Expect = 9.2e-78
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRA KKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQNK+NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQNKSNVTRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. NCBI nr
Match: XP_008462521.1 (PREDICTED: 60S ribosomal protein L24 [Cucumis melo] >XP_038881281.1 60S ribosomal protein L24 [Benincasa hispida] >KAA0025300.1 60S ribosomal protein L24 [Cucumis melo var. makuwa] >TYK07368.1 60S ribosomal protein L24 [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 3.5e-77
Identity = 160/164 (97.56%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQ K NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. NCBI nr
Match: XP_004143295.1 (60S ribosomal protein L24 [Cucumis sativus] >KGN48224.1 hypothetical protein Csa_003063 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 7.8e-77
Identity = 159/164 (96.95%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQ K NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. NCBI nr
Match: KAG6604377.1 (Sulfite exporter TauE/SafE family protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQ
Sbjct: 489 MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQ 548

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 549 HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 608

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKTQKTQNKANV RGAAPKGPKLGGGGGKR
Sbjct: 609 KTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 652

[Close]

BLAST of Lcy04g011630 vs. NCBI nr
Match: XP_022926170.1 (60S ribosomal protein L24-like [Cucurbita moschata] >XP_022977680.1 60S ribosomal protein L24-like [Cucurbita maxima] >XP_023543140.1 60S ribosomal protein L24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKTQKTQNKANV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy04g011630 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-70
Identity = 139/164 (84.76%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVARGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+Q K N+ + AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Lcy04g011630 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.9e-68
Identity = 141/165 (85.45%), Postives = 149/165 (90.30%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQNKANVAR-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   KAN  +  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Lcy04g011630 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

[Close]

BLAST of Lcy04g011630 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

The following BLAST results are available for this feature:

BLAST of Lcy04g011630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	1.4e-73	89.57	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	2.5e-70	90.00	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
Q42347	2.1e-69	84.76	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P38666	2.6e-67	85.45	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]
P50888	7.6e-67	86.67	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]

BLAST of Lcy04g011630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRP7	4.5e-78	98.17	60S ribosomal protein L24-like OS=Momordica charantia OX=3673 GN=LOC111013702 PE...	[more]
A0A5D3C883	1.7e-77	97.56	60S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CH43	1.7e-77	97.56	60S ribosomal protein L24 OS=Cucumis melo OX=3656 GN=LOC103500860 PE=3 SV=1	[more]
A0A0A0KHD4	3.8e-77	96.95	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449310 PE=3 ...	[more]
A0A6J1IN14	4.9e-77	96.34	60S ribosomal protein L24-like OS=Cucurbita maxima OX=3661 GN=LOC111477918 PE=3 ...	[more]

BLAST of Lcy04g011630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143901.1	9.2e-78	98.17	60S ribosomal protein L24-like [Momordica charantia]	[more]
XP_008462521.1	3.5e-77	97.56	PREDICTED: 60S ribosomal protein L24 [Cucumis melo] >XP_038881281.1 60S ribosoma...	[more]
XP_004143295.1	7.8e-77	96.95	60S ribosomal protein L24 [Cucumis sativus] >KGN48224.1 hypothetical protein Csa...	[more]
KAG6604377.1	1.0e-76	96.34	Sulfite exporter TauE/SafE family protein 4, partial [Cucurbita argyrosperma sub...	[more]
XP_022926170.1	1.0e-76	96.34	60S ribosomal protein L24-like [Cucurbita moschata] >XP_022977680.1 60S ribosoma...	[more]

BLAST of Lcy04g011630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	1.5e-70	84.76	ribosomal protein L24	[more]
AT3G53020.1	1.9e-68	85.45	Ribosomal protein L24e family protein	[more]
AT2G44860.1	5.5e-12	36.72	Ribosomal protein L24e family protein	[more]
AT2G44860.2	5.5e-12	36.72	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..139
None	No IPR available	GENE3D	6.10.250.1270		coord: 69..138 e-value: 3.0E-22 score: 80.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..136
None	No IPR available	PANTHER	PTHR10792:SF41	LOW QUALITY PROTEIN: 60S RIBOSOMAL PROTEIN L24-LIKE	coord: 1..164
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 e-value: 4.1E-4 score: 29.7
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 3..67 e-value: 8.1E-29 score: 99.7
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..164
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 3..56 e-value: 4.54074E-20 score: 76.457
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 3..64 e-value: 9.4E-34 score: 117.5
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g011630.1	Lcy04g011630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome