Lcy04g011390 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g011390
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr04: 42970390 .. 42970767 (-)
RNA-Seq ExpressionLcy04g011390
SyntenyLcy04g011390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGACTAAGTGAAGAAGAGAGAAATAAAGCAACTTTAATCATATGGAATCTATGGTCATATCGAAACAAAACCATGTCTAGTGGAACCAAAGCAGATCAGAGGCAGATTGCTGGAGCTATAGAAGTCAGCTTTGAGGAACAAATCAAGATTAGAGATACTAACCTGGTTGGCCAGCCATTGGAGTCGAGCTTTGTGGACCCCTCCCCCCATCCGTGCTTAAAGTTGAATTCTGATGCCTTGTGGAGTAGTGCTGAAAGCTCGGGCGGTTTTGGATGGACGATCCGTGACTCCGCTGGGTCTTTGATCGAAGAATTGGTCAATTCTTGCACTAGAAGCTGCTGCTTTGAAGGAGGGCATCTCGAATTACCTTAA

mRNA sequence

ATGGAAAGACTAAGTGAAGAAGAGAGAAATAAAGCAACTTTAATCATATGGAATCTATGGTCATATCGAAACAAAACCATGTCTAGTGGAACCAAAGCAGATCAGAGGCAGATTGCTGGAGCTATAGAAGTCAGCTTTGAGGAACAAATCAAGATTAGAGATACTAACCTGGTTGGCCAGCCATTGGAGTCGAGCTTTGTGGACCCCTCCCCCCATCCGTGCTTAAAGTTGAATTCTGATGCCTTGTGGAGTAGTGCTGAAAGCTCGGGCGGTTTTGGATGGACGATCCGTGACTCCGCTGGGTCTTTGATCGAAGAATTGGTCAATTCTTGCACTAGAAGCTGCTGCTTTGAAGGAGGGCATCTCGAATTACCTTAA

Coding sequence (CDS)

ATGGAAAGACTAAGTGAAGAAGAGAGAAATAAAGCAACTTTAATCATATGGAATCTATGGTCATATCGAAACAAAACCATGTCTAGTGGAACCAAAGCAGATCAGAGGCAGATTGCTGGAGCTATAGAAGTCAGCTTTGAGGAACAAATCAAGATTAGAGATACTAACCTGGTTGGCCAGCCATTGGAGTCGAGCTTTGTGGACCCCTCCCCCCATCCGTGCTTAAAGTTGAATTCTGATGCCTTGTGGAGTAGTGCTGAAAGCTCGGGCGGTTTTGGATGGACGATCCGTGACTCCGCTGGGTCTTTGATCGAAGAATTGGTCAATTCTTGCACTAGAAGCTGCTGCTTTGAAGGAGGGCATCTCGAATTACCTTAA

Protein sequence

MERLSEEERNKATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNLVGQPLESSFVDPSPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIEELVNSCTRSCCFEGGHLELP
Homology
BLAST of Lcy04g011390 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.0e-07
Identity = 36/118 (30.51%), Postives = 56/118 (47.46%), Query Frame = 0

Query: 1   MERLSEEERNKATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNLVGQ 60
           M++  EEER ++ +I W +W  RNK++  G  ++ R I   I+  +      RDTNL G+
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVID-RYIINSAGRDTNLKGK 60

Query: 61  PLESSF-------------VDPSPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIE 106
                                P      KLN+DA W +  ++GG GW +RD  G +I+
Sbjct: 61  SANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIK 117

BLAST of Lcy04g011390 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.9e-06
Identity = 35/118 (29.66%), Postives = 56/118 (47.46%), Query Frame = 0

Query: 1   MERLSEEERNKATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNLVGQ 60
           M++  EEER ++ +I W +W  RNK++  G   + R I  AI+  +      R+TNL G+
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAID-RYIINSAGRNTNLKGK 60

Query: 61  PLESSF-------------VDPSPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIE 106
                                P      KLN++A W +  ++GG GW +RD  G +I+
Sbjct: 61  STNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIK 117

BLAST of Lcy04g011390 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 34/117 (29.06%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 1   MERLSEEERNKATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNL--- 60
           M++  EEER ++ +I   +W  RNK++  G  ++ R I  AI+  +      +DTNL   
Sbjct: 179 MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAID-RYIINSAGQDTNLKRK 238

Query: 61  ---------VGQPLESSFVDPSPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIE 106
                    +G    + +  P+ +   KLN+DA W +  ++ G GW +RD  G +I+
Sbjct: 239 SKDFHPIRRIGDNTRARWKPPTSN-SWKLNTDAAWRADTNTDGIGWILRDEKGEVIK 293

BLAST of Lcy04g011390 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 34/117 (29.06%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 1   MERLSEEERNKATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNL--- 60
           M++  EEER ++ +I   +W  RNK++  G  ++ R I  AI+  +      +DTNL   
Sbjct: 144 MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAID-RYIINSAGQDTNLKRK 203

Query: 61  ---------VGQPLESSFVDPSPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIE 106
                    +G    + +  P+ +   KLN+DA W +  ++ G GW +RD  G +I+
Sbjct: 204 SKDFHPIRRIGDNTRARWKPPTSN-SWKLNTDAAWRADTNTDGIGWILRDEKGEVIK 258

BLAST of Lcy04g011390 vs. ExPASy TrEMBL
Match: A0A6J5X9J3 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS29306 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-04
Identity = 29/104 (27.88%), Postives = 41/104 (39.42%), Query Frame = 0

Query: 16  IWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNLVGQPLESSFVDP------ 75
           +W LW  RN  +  G+  D   + G +    +E    R   +  +PL +    P      
Sbjct: 29  LWRLWKTRNSAVFEGSVMDPTTMVGCLHAQVQE---YRAARMAAKPLINKLPRPPDRVQQ 88

Query: 76  -------SPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIEE 107
                   PH  +K N D  W      GG GW IRDS G L+ +
Sbjct: 89  MPTAWTKPPHGWVKANCDGAWLQQTQKGGVGWVIRDSDGWLVRQ 129

BLAST of Lcy04g011390 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 36/118 (30.51%), Postives = 56/118 (47.46%), Query Frame = 0

Query: 1   MERLSEEERNKATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNLVGQ 60
           M++  EEER ++ +I W +W  RNK++  G  ++ R I   I+  +      RDTNL G+
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVID-RYIINSAGRDTNLKGK 60

Query: 61  PLESSF-------------VDPSPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIE 106
                                P      KLN+DA W +  ++GG GW +RD  G +I+
Sbjct: 61  SANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIK 117

BLAST of Lcy04g011390 vs. NCBI nr
Match: KAF2619702.1 (hypothetical protein F2Q68_00042564 [Brassica cretica])

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-06
Identity = 30/91 (32.97%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 12  ATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNLVGQPLESSFVDPSP 71
           A  IIW +W  RN+ +  G    + +          E +  ++  L  +P  +   +P P
Sbjct: 71  APWIIWQIWIARNQLIFEGKSYTEEETMTRAVSLAREWLNAQEPKLPPKPKRTLCPNPRP 130

Query: 72  HPCLKLNSDALWSSAESSGGFGWTIRDSAGS 103
             C+ LN+DA W ++    GFGWTIRDSAG+
Sbjct: 131 PHCIVLNTDASWKASSMLAGFGWTIRDSAGT 161

BLAST of Lcy04g011390 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 35/118 (29.66%), Postives = 56/118 (47.46%), Query Frame = 0

Query: 1   MERLSEEERNKATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNLVGQ 60
           M++  EEER ++ +I W +W  RNK++  G   + R I  AI+  +      R+TNL G+
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAID-RYIINSAGRNTNLKGK 60

Query: 61  PLESSF-------------VDPSPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIE 106
                                P      KLN++A W +  ++GG GW +RD  G +I+
Sbjct: 61  STNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIK 117

BLAST of Lcy04g011390 vs. NCBI nr
Match: KAG5387786.1 (hypothetical protein IGI04_029327, partial [Brassica rapa subsp. trilocularis])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 33/92 (35.87%), Postives = 47/92 (51.09%), Query Frame = 0

Query: 12  ATLIIWNLWSYRNKTMSSG-TKADQRQIAGAIEVSFEEQIKIRDTNLVGQPLESSFVDPS 71
           A  IIW LW  RN+    G T  ++  +  A+ ++ E Q   ++  +  +P     + P 
Sbjct: 37  APWIIWQLWIARNQLSFEGKTYTEEETMTRAVALAREWQ-NAQEPKIPPKPKSPLCLPPR 96

Query: 72  PHPCLKLNSDALWSSAESSGGFGWTIRDSAGS 103
           P  CL LN DA W +     GFGWT RDSAG+
Sbjct: 97  PPHCLVLNIDAAWKATSMLAGFGWTTRDSAGT 127

BLAST of Lcy04g011390 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 34/117 (29.06%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 1   MERLSEEERNKATLIIWNLWSYRNKTMSSGTKADQRQIAGAIEVSFEEQIKIRDTNL--- 60
           M++  EEER ++ +I   +W  RNK++  G  ++ R I  AI+  +      +DTNL   
Sbjct: 179 MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAID-RYIINSAGQDTNLKRK 238

Query: 61  ---------VGQPLESSFVDPSPHPCLKLNSDALWSSAESSGGFGWTIRDSAGSLIE 106
                    +G    + +  P+ +   KLN+DA W +  ++ G GW +RD  G +I+
Sbjct: 239 SKDFHPIRRIGDNTRARWKPPTSN-SWKLNTDAAWRADTNTDGIGWILRDEKGEVIK 293

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSV17.0e-0730.51uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CP265.9e-0629.66uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DL641.1e-0429.06uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DQC91.1e-0429.06uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J5X9J39.5e-0427.88RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS29... [more]
Match NameE-valueIdentityDescription
XP_022156777.11.4e-0630.51uncharacterized protein LOC111023608 [Momordica charantia][more]
KAF2619702.14.2e-0632.97hypothetical protein F2Q68_00042564 [Brassica cretica][more]
XP_022143535.11.2e-0529.66uncharacterized protein LOC111013412 [Momordica charantia][more]
KAG5387786.12.7e-0535.87hypothetical protein IGI04_029327, partial [Brassica rapa subsp. trilocularis][more]
XP_022154990.12.3e-0429.06uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g011390.1Lcy04g011390.1mRNA