Lcy04g011120 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g011120
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA polymerase sigma factor
Location	Chr04: 42529048 .. 42534177 (+)
RNA-Seq Expression	Lcy04g011120
Synteny	Lcy04g011120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGAGAACCCCCCCAATCATTTCTTGGATCAAAAAAGAGAAAAGAAAGAAAAAGAAGAAAAATCTGAAGCAGAGATAGTATATAACTGAAACCTGATCCATTTGAAAAAATCTAGTCCCGATTTTGAGGTGTGAATTACTCTGTGAAACCACTGAAGAACCTCCCCTTCTTCTTTATCCAAAAACCCACAATCCATTTCTCACCAATTTTCTCAGAAGAAATCCGCAGAGAATGATGACCCAGATGGTTTACAGAGACTGAAAGGCGAGAAAAATTCTCAGTGAACAGTTCTAAGAGACCTCCATGTGAGGAGAGACTCTTTAGTTTTTGTCTTACTTCAAAAGGAACAGTGGGTTTTTACGTATGGAGGCTGGACTCAACTTGTTGTCTTCATCTTCGCCTTTCATTTCGAGATGCCACCCGAGAAGCTTCCTCCATCCTTCTTGTTCTTCTTCTTCTTCCTCTTCTTCTTCAGGTATTATTTGCAGTTTGATATTTAGCTCATTTCTGTGCTTTGTGTGGGATTTTCCTGTTGCATTTAGCTCAAATGTGAAACTCAGAGAGTTTTGTTTAGAATATTTCGAGTTGGGTTTGCCTTATTTGGATTTTATAGCGCTTCAAATGGCAACTTCTTGTTCAAATTGTGTAAAGATTGTTGAATGTTTTTTCTGAGTCGCATGGTGCCCATCAGCAATTTGTTCTCGTGCTCCATCGCCAATGGGGAGTGTGAAGAAGGCTGAATTTAGGATTTCATTATCAATTATCAGAAATGAGGCCTCATTGTGCTTGGCTTGTTTATTTCTTTCCCTTTCTAGGGAGGAGCAGTGTTTGTACTTCCAAGAAGGATTTAAAGTTCCTTTTAACTCTTTTTGAACTTTTGAGTATGTAATTAAACACCATGAAGCATTTGAAAGTTAGTTTTTAATTGGCTAAAAACTGACTAAAGTCATGTCAAACTCATCATGCATCGATGCTGTTCTCTTTTATCATTTAGTTTTCTAAATTAGCTTTCTACACAACATATTTGTGTATGTAGAAATGCCACATTTACTCAGGTACATGTTTGTTTTGAAATTCTGCAGTTTCTATGTTTCATGAGCAAGCGACTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCACAAATGCTTAAGAATGATAAAACATCCCAGGTTAGCTTCTGCATATAAATTGGATTATTGTACTGTAATAGAACTAATTAGCATTTTGTGGTTTACTTAAAAATATGCAATTCTCTCTCTGTGCATTGACGTTTGTTTCACGAATGGCTGTATGTTTTTTTAGGATGTAAGCTCTTTTATTGTTTAAACATTGCTGTTGTGATCTGTCTGTTAAAATGCGTAATGTCTTAGTTTCACTGAGCATACTCTGACCGACAGTCCCAATGTCCGTGCTGATGTCTGTATTGATGTTTTTCCAGTTTCTGTCTTTACACATGCTCTATCTTTTTATTTCTCACAAGCACACGATTATAAATATTCAAGTATTTATATGTATCTGTGTGTGCACATCTGCATTTGGGAATTCTAATTAATGGTTCATTTGTTGCCCATTGTGAAGATGACTCTAGATAGGAGGTTGATCGAGAGGAGTGTTTCATTCGATGAAGAGAGCCGAAGTGGCCATGATCATCTGGTCTGGGAACTTAAGCATCAAGCGGATGAGTGGCCTGGTTTATTATCATCGTAAGATGAACTAAACTTCCTTCTTCTGTCCATTTTTATCAATATACAAATAGCAATTTGTATCCATAATGCATCCTTTCTTTCATATTGAGTAAAGACAATTATTCTGCAGATGGCCATCCTTACAAATGGGGGAATATAAGATATCATCAGTGGTAAAGCAATCTAATAATACCGATAGGGAGGTGCTTGTTGAAGATGAGCCAGAGAATGTCATTGCCCTTGCTAAGAAAGCTTTGTCAGCTTCAAAACAAGTAGCATCATTAGTGGATGAGTCTGAATTAGTTGGAACTGATCTTGATTCTTCTTCTTCTTCGGAGTAAGTTATGCTTTTCTTAGATAAAAAAAAGTTATGCTTTTCTGATCTTATGTGCACAATTTATGATAGCCACATTTGGTATAATAGTTTCATTGCGACTATAATCTTGCTCATATTGGGATATATTCTTTGGTTAGTTCTCTAAGCAAGGAGCAGAGAACTGTAAAGTCAACCAAGCTGCAAGATAGACGATCTAAGAAGAGAAGGGTGCCAAAACATGTAACAACGATTCACGAGACTTATAATCGAGGGAAAGATACACGGAGAAAAACAAGTGAAAATTTTGATCCTAATGATCCTCTACGACTGTTCTTGTGGGGTCCTGAAACAAAGAAGCTTTTAACAGTTCAAGAAGAGTCTGAGTTGATTGTCCAAATCCAGGTAGGCATGTGAAGGCTTTCTATTTTCAGTTTTCAGGTTTCATATGTCTTCTATTCATTAGGATTGTTATACGTGCTTGATAAAGTAACCTTTTAACAGGATTTAATGATATTGGACAATGTGAAAGCTAGACTTCAATCCCAGTTTGGCCGTGAACCAACTTTGGTTGAATGGGCTGAAGCTCTAGGGCTTACTTGTCAACGCTTACAGTCACAGCTCCACTCCTTTCGGGTCAGTCGCGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCTAAAAAATATCAGGGCCGTGGTCTTAGCCTTCACGACTTATTGCAGGTTATGCCCTAACTATGAGGCATGCATCTGTGGTGCAAAGCCCTTACTCCCATCCTTTTCAGTCAGTAGATGAGTTCAATTGTCAAAATTTGTAGGCCACTGGGCACACTGAGCAGAGTGCTAGACATGTATTTCTCAAACCTTCTGCTTAAGGCACTGTGCTTAAGTTGGATTTTTTTTTTCTTGTTTGTTTTAAAAGTATCTGCTTTTCTCATCTGTGCATTTGTCTGTCAGTCTATATACCTTATATATATGCCATGGCATAATTCTTAGTCTTTAGCGAACAGATTGTAAATTATTTACCCAAATTATATCTTGAAACAAATATAAGATCTGAAAATTTAGGCAATAGACATGGTGATCTACGTGGCACATGATCTAAATTCTAATTATGAATCTTTTTTTGAAGGCTCATTCATGTAGGATGTCAACCAAAATTAAGAATCAGGCACTGCTGCACTACTATTTCTGTTGTACGTAACATTATCTTCTACAATACACTAAACATTATGTCAGGCCGCCGATTATTAACACATACGTGAGGAGGGGTAGAAGTGGGAATTCCCCTTCCCCATCATCAGATTTAGTGCCGGTGTATTTTGGGAAAGTCGGTTTGGTTTAGTCGGTTGAATTTAGTTATAAATATTGTTGTTTTGGGCCATTCTAGGGTATGCTTAGTCTTTTGTTAAACTTTTCTTTATCTGTAAGAAAGGTGCCGGAGATACCAACATCTCGAATAGGTGGAGTTTGTACTGTGATTTTGGTGTAATCAGACTTTCGAATTTAGTATCTTAAAACTGTTCCTTCTCGTGTATTGCTGAGAGCATTATATAAAGTCCTGATCTGCACAGGAATTATGCAAATCACTTAATATTGAGTTATTTAAGTCGAGGGTCTGGTTAAAGGTTCAAAATTCTTATTTAAACGTTTGTGTTTTGTATTTGGAATAGGGTCTCCTCTATCTAATATGTTGAGATATATGAATAGGCTACTGATATTTCATGGTTCATTTCTGATATTGTCGTAGGAAGGAAGCTTGGGACTTATGAAGAGTGTCGAAAAATTCAAACCACAAGCTGGTTGCCGCTTTGCCACTTATGCTTATTGGTGGATTAGGCAATCAATCAGGAAGGCCATATTCGAACACTCTAGAACTATTCGTTTGCCGGTAATGATAATTACTTAGTCTTTTAGGTTTGTTCTTGAAGAAATAAACGATTACATCTCATTGTTCAGTTAAACCTTTTTTTATTACACAGTTACCTGTTTTATCCTTTTTACAAAGGTAACAAGTATAACAAAGTTGCTATAACATTTGCAGGAAAATGTATATGGCCTCCTTGGAAAGGTAACAGAGGCAAAGAATTATTTTGTTCGAGCAGGGAATCTTAAACCATCCAAAGAAGAATTAGCTGCACATGTTGGAATTACAGTTGAGAGATTGGATAAGTTACTCTTTATGTCGAGAATTCCGCGTTCATTGCAGCAACCTGTATGGGCTGACCAAGATACCACTTTTCAGGTATCTATCACTTCTTCTCTTGACTCTTAACCAATAAATTAAGATCTAAGATATTTACCTTGCAAAAAGCTTGCAAGTCTGGCACTACTTTATTGAAAATGTGGCTCAGAGAGAAGGAACATTATTGAACCGTGCCGAATTGCTAAATGCTAGGTTGCAAATAAAATTCACTTTATACCGGTAATTATCATCTGACAGGGAAGCTGTTTTAAATGTGGAAGACAATAATGATGTCAGGAATAGAGATCAAAGAGATGTGTTGCCATTATTCAGAAATCCATCTTGCTCAGTTCCATCATTTGTCTGTTGGCCCTGCGTGGGTATTAGTTTGTCACTGGATAATGACTATAAACTGCTTTGCTGGTGTCATTGGAAGATATATATTATAGAACTGGTTGCTACAATTTAATAATGAAATCATATAAAGTGCATCGAGTTCGTTACATATATAGGCATCGATTCATTTAGGCATGGGATAGATTCACTCTTAACATCTTGCTATAACAGCTCTCTACCATAATCTGAGAATGCATTCTGAATCAAATAACAGGAAATAACTGCAGACTCTGAAGTCGACACCCCAGACGTCAGCGTGGAAAGGGAGCTGATGCGTAGGCACATTCGGAATCTCCTTAGCATTCTCAGTCCAAAAGAGAGACGGATCATCAGACTACGATTTGGTATCGAAGATGGTAAAGAGAAGACACTGCTGGAAATCGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGGCAGCTCGAAAACCGAGCCTTGTACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGCTGCGTATGCCGATTTACTGACTTAA

mRNA sequence

AATCGAGAACCCCCCCAATCATTTCTTGGATCAAAAAAGAGAAAAGAAAGAAAAAGAAGAAAAATCTGAAGCAGAGATAGTATATAACTGAAACCTGATCCATTTGAAAAAATCTAGTCCCGATTTTGAGGTGTGAATTACTCTGTGAAACCACTGAAGAACCTCCCCTTCTTCTTTATCCAAAAACCCACAATCCATTTCTCACCAATTTTCTCAGAAGAAATCCGCAGAGAATGATGACCCAGATGGTTTACAGAGACTGAAAGGCGAGAAAAATTCTCAGTGAACAGTTCTAAGAGACCTCCATGTGAGGAGAGACTCTTTAGTTTTTGTCTTACTTCAAAAGGAACAGTGGGTTTTTACGTATGGAGGCTGGACTCAACTTGTTGTCTTCATCTTCGCCTTTCATTTCGAGATGCCACCCGAGAAGCTTCCTCCATCCTTCTTGTTCTTCTTCTTCTTCCTCTTCTTCTTCAGTTTCTATGTTTCATGAGCAAGCGACTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCACAAATGCTTAAGAATGATAAAACATCCCAGATGACTCTAGATAGGAGGTTGATCGAGAGGAGTGTTTCATTCGATGAAGAGAGCCGAAGTGGCCATGATCATCTGGTCTGGGAACTTAAGCATCAAGCGGATGAGTGGCCTGGTTTATTATCATCATGGCCATCCTTACAAATGGGGGAATATAAGATATCATCAGTGGTAAAGCAATCTAATAATACCGATAGGGAGGTGCTTGTTGAAGATGAGCCAGAGAATGTCATTGCCCTTGCTAAGAAAGCTTTGTCAGCTTCAAAACAAGTAGCATCATTAGTGGATGAGTCTGAATTAGTTGGAACTGATCTTGATTCTTCTTCTTCTTCGGATTCTCTAAGCAAGGAGCAGAGAACTGTAAAGTCAACCAAGCTGCAAGATAGACGATCTAAGAAGAGAAGGGTGCCAAAACATGTAACAACGATTCACGAGACTTATAATCGAGGGAAAGATACACGGAGAAAAACAAGTGAAAATTTTGATCCTAATGATCCTCTACGACTGTTCTTGTGGGGTCCTGAAACAAAGAAGCTTTTAACAGTTCAAGAAGAGTCTGAGTTGATTGTCCAAATCCAGGATTTAATGATATTGGACAATGTGAAAGCTAGACTTCAATCCCAGTTTGGCCGTGAACCAACTTTGGTTGAATGGGCTGAAGCTCTAGGGCTTACTTGTCAACGCTTACAGTCACAGCTCCACTCCTTTCGGGTCAGTCGCGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCTAAAAAATATCAGGGCCGTGGTCTTAGCCTTCACGACTTATTGCAGGAAGGAAGCTTGGGACTTATGAAGAGTGTCGAAAAATTCAAACCACAAGCTGGTTGCCGCTTTGCCACTTATGCTTATTGGTGGATTAGGCAATCAATCAGGAAGGCCATATTCGAACACTCTAGAACTATTCGTTTGCCGGAAAATGTATATGGCCTCCTTGGAAAGGTAACAGAGGCAAAGAATTATTTTGTTCGAGCAGGGAATCTTAAACCATCCAAAGAAGAATTAGCTGCACATGTTGGAATTACAGTTGAGAGATTGGATAAGTTACTCTTTATGTCGAGAATTCCGCGTTCATTGCAGCAACCTGTATGGGCTGACCAAGATACCACTTTTCAGGAAATAACTGCAGACTCTGAAGTCGACACCCCAGACGTCAGCGTGGAAAGGGAGCTGATGCGTAGGCACATTCGGAATCTCCTTAGCATTCTCAGTCCAAAAGAGAGACGGATCATCAGACTACGATTTGGTATCGAAGATGGTAAAGAGAAGACACTGCTGGAAATCGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGGCAGCTCGAAAACCGAGCCTTGTACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGCTGCGTATGCCGATTTACTGACTTAA

Coding sequence (CDS)

ATGGAGGCTGGACTCAACTTGTTGTCTTCATCTTCGCCTTTCATTTCGAGATGCCACCCGAGAAGCTTCCTCCATCCTTCTTGTTCTTCTTCTTCTTCCTCTTCTTCTTCAGTTTCTATGTTTCATGAGCAAGCGACTCCTGCTCGATACTTTTCAACCTCATTTCTTTCACAAGAACAGCACCATGAGTGTAGACCTCAATCACAAATGCTTAAGAATGATAAAACATCCCAGATGACTCTAGATAGGAGGTTGATCGAGAGGAGTGTTTCATTCGATGAAGAGAGCCGAAGTGGCCATGATCATCTGGTCTGGGAACTTAAGCATCAAGCGGATGAGTGGCCTGGTTTATTATCATCATGGCCATCCTTACAAATGGGGGAATATAAGATATCATCAGTGGTAAAGCAATCTAATAATACCGATAGGGAGGTGCTTGTTGAAGATGAGCCAGAGAATGTCATTGCCCTTGCTAAGAAAGCTTTGTCAGCTTCAAAACAAGTAGCATCATTAGTGGATGAGTCTGAATTAGTTGGAACTGATCTTGATTCTTCTTCTTCTTCGGATTCTCTAAGCAAGGAGCAGAGAACTGTAAAGTCAACCAAGCTGCAAGATAGACGATCTAAGAAGAGAAGGGTGCCAAAACATGTAACAACGATTCACGAGACTTATAATCGAGGGAAAGATACACGGAGAAAAACAAGTGAAAATTTTGATCCTAATGATCCTCTACGACTGTTCTTGTGGGGTCCTGAAACAAAGAAGCTTTTAACAGTTCAAGAAGAGTCTGAGTTGATTGTCCAAATCCAGGATTTAATGATATTGGACAATGTGAAAGCTAGACTTCAATCCCAGTTTGGCCGTGAACCAACTTTGGTTGAATGGGCTGAAGCTCTAGGGCTTACTTGTCAACGCTTACAGTCACAGCTCCACTCCTTTCGGGTCAGTCGCGAAAAGCTGATTAATGCAAATTTGCGAATGGTAGTTCACATCGCTAAAAAATATCAGGGCCGTGGTCTTAGCCTTCACGACTTATTGCAGGAAGGAAGCTTGGGACTTATGAAGAGTGTCGAAAAATTCAAACCACAAGCTGGTTGCCGCTTTGCCACTTATGCTTATTGGTGGATTAGGCAATCAATCAGGAAGGCCATATTCGAACACTCTAGAACTATTCGTTTGCCGGAAAATGTATATGGCCTCCTTGGAAAGGTAACAGAGGCAAAGAATTATTTTGTTCGAGCAGGGAATCTTAAACCATCCAAAGAAGAATTAGCTGCACATGTTGGAATTACAGTTGAGAGATTGGATAAGTTACTCTTTATGTCGAGAATTCCGCGTTCATTGCAGCAACCTGTATGGGCTGACCAAGATACCACTTTTCAGGAAATAACTGCAGACTCTGAAGTCGACACCCCAGACGTCAGCGTGGAAAGGGAGCTGATGCGTAGGCACATTCGGAATCTCCTTAGCATTCTCAGTCCAAAAGAGAGACGGATCATCAGACTACGATTTGGTATCGAAGATGGTAAAGAGAAGACACTGCTGGAAATCGGCAACATGTTTGGTTTGTCCAAGGAGAGGGTGCGGCAGCTCGAAAACCGAGCCTTGTACAAGCTTAAACGATGCTGCAACAGCCAAGGACTCGCTGCGTATGCCGATTTACTGACTTAA

Protein sequence

MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT

Homology

[Close]

BLAST of Lcy04g011120 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 1.6e-148
Identity = 311/571 (54.47%), Postives = 399/571 (69.88%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATP-----------AR 60
           MEA  NL+SSS  F ++ H          SS SS SSV M H+Q T            +R
Sbjct: 1   MEATRNLVSSSPSFQTKTH--------LKSSYSSPSSVVMLHDQTTTPVVNSRHLNSLSR 60

Query: 61  YFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKH 120
           +F  S LSQE   E RP S  L++D+TSQ+TL+RR  +  VS  E+ +        +L H
Sbjct: 61  HFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELVSSREDEK-----FEQQLLH 120

Query: 121 QADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVA 180
               W  L+S   S    E K+ +VV          L + E  +V+ALA+KALSASKQ A
Sbjct: 121 STGLWNLLISPLTS----ETKLPAVVSP--------LADAELCDVVALAQKALSASKQAA 180

Query: 181 SLVDESELVGT----DLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN 240
            LVD++E   +    D  S+SSS SL ++   V+S +  +RR+K RR PK      E Y 
Sbjct: 181 LLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYV 240

Query: 241 RGK-DTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS 300
             K   ++K  +  D +D L+LFLWGPETK+LLT +EE+ELI  IQ L+ L+ VK +L+S
Sbjct: 241 PQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLES 300

Query: 301 QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHD 360
           Q G EPT+ EWAEA+G++   L+S +H  R SREKLI ANLR+VVHIAK+YQ RGL+  D
Sbjct: 301 QNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 360

Query: 361 LLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKV 420
           LLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+IF++SRTIRLPENVY LLGKV
Sbjct: 361 LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 420

Query: 421 TEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEIT 480
           +EA+   V+ GN +PSKEELA HVG++ E+LDKLL+ +R P S+QQP+W+DQDTTFQEIT
Sbjct: 421 SEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEIT 480

Query: 481 ADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLS 540
            DS ++TP +SV ++LMR H+RNLL++LSPKERRII+LRFGI+ GK+++L EIG ++GLS
Sbjct: 481 PDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLS 540

Query: 541 KERVRQLENRALYKLKRCCNSQGLAAYADLL 556
           KERVRQLE+RALY+LK+  NS GL AYADLL
Sbjct: 541 KERVRQLESRALYRLKQNMNSHGLHAYADLL 546

[Close]

BLAST of Lcy04g011120 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-64
Identity = 154/444 (34.68%), Postives = 253/444 (56.98%), Query Frame = 0


Query: 130 KISSVVKQSNNTDR------------EVLVEDEPENV---IALAKKALSASKQVASLVDE 189
           K +++ K SNNT+             +   E E   +   +A++   + + K  AS    
Sbjct: 126 KDATLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITAS-ASN 185

Query: 190 SELVGTDLDSSSSSD-SLSKEQRT----VKSTKLQDRRSKKRRVPKHVTTIHETYNRGKD 249
            E +G DL+S    +  L +EQ +    V+ST+  +R++++ +  +   +   +   G  
Sbjct: 186 KESIG-DLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSS 245

Query: 250 TRRK--TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFG 309
            ++K   ++  D NDPLR       + KLLTV+EE EL   IQDL+ L+ ++  L  + G
Sbjct: 246 PKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSG 305

Query: 310 REPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQ 369
           R+PT  +WA A G+  + L+ ++H   + ++K+I +N+R+V+ IAK YQG G++L DL+Q
Sbjct: 306 RQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 365

Query: 370 EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA 429
           EG  GL++  EKF    G +F+TYA+WWI+Q++RK++ + SR IRLP ++     +V EA
Sbjct: 366 EGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEA 425

Query: 430 KNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADS 489
           +          P  EE+A   G++++RL  +L   + PRSL Q +  +Q+    E+ AD 
Sbjct: 426 RKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADP 485

Query: 490 EVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKER 549
           E  T +  + +E MR+ +  +L  L  +E+++IR RFG+EDG+ KTL EIG M G+S+ER
Sbjct: 486 EAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRER 545

Query: 550 VRQLENRALYKLKRCCNSQGLAAY 552
           VRQ+E+ A  KLK    +  L  Y
Sbjct: 546 VRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of Lcy04g011120 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.7e-63
Identity = 126/321 (39.25%), Postives = 206/321 (64.17%), Query Frame = 0


Query: 231 RRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREP 290
           R ++ +     D +RL+L      +LL   EE EL  +I DL+ L+ V+ RL  +  R+P
Sbjct: 69  RTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDP 128

Query: 291 TLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGS 350
              EWAEA+ L     + +LH  R +++K++ +NLR+VV IAKKY  RGLS  DL+QEGS
Sbjct: 129 RDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGS 188

Query: 351 LGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNY 410
           LGL+++ EKF  + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y  + ++ +    
Sbjct: 189 LGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKL 248

Query: 411 FVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVD 470
             +    KP++EE+A  + +T+E+L  +   +++P SL+ P+  ++D+   +   +S+ +
Sbjct: 249 LSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF-IESDGE 308

Query: 471 TPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQ 530
           TP+  V + L+R  +  +L  LSP+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ
Sbjct: 309 TPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQ 368

Query: 531 LENRALYKLKRCCNSQGLAAY 552
           +E +AL KL+    +  L  Y
Sbjct: 369 IEAKALRKLRHPNRNSVLKEY 388

[Close]

BLAST of Lcy04g011120 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 6.6e-62
Identity = 124/300 (41.33%), Postives = 196/300 (65.33%), Query Frame = 0


Query: 242 DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGL 301
           D +RL+L      +LL   EE EL  QI DL+ L+ ++  L  Q  R P+  EWA A+  
Sbjct: 89  DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148

Query: 302 TCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFK 361
                + +L   R +++K++ +NLR+VV IAKKY  RGLS  DL+QEGSLGL+++ EKF 
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208

Query: 362 PQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSK 421
            + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y  + ++ +      +    KP++
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268

Query: 422 EELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVEREL 481
           EE+A  + +T+E+L  +   +++P SL+ P+  ++D+   + I AD E  TP+  V + L
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE--TPEDEVAKNL 328

Query: 482 MRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK 541
           +R  +  +LS LSP+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E +AL KL+
Sbjct: 329 LREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386

[Close]

BLAST of Lcy04g011120 vs. ExPASy Swiss-Prot
Match: Q31ME3 (RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA2 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.2e-56
Identity = 127/319 (39.81%), Postives = 198/319 (62.07%), Query Frame = 0


Query: 234 TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLV 293
           +S  + P D +R +L      +LLT +EE     Q+Q LM+L + +  L+ + G EP+  
Sbjct: 4   SSAQYSP-DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKE 63

Query: 294 EWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGL 353
           EWA A+ L  + L  Q+   + ++ K+I ANLR+VV IAKKYQ R +   DL+QEG+LGL
Sbjct: 64  EWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGL 123

Query: 354 MKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVR 413
            + VEKF P  G +F+TYAYWWIRQ+I +AI + SRTIRLP ++   L K+ + +    +
Sbjct: 124 ERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQ 183

Query: 414 AGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPD 473
                 +  ELA  + + +E++ + + M+R P SL   V   QDT  QE+  D E  +P 
Sbjct: 184 QLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLED-EQSSPS 243

Query: 474 VSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLEN 533
             VE+E +RR +RNL++ L+P+++ +I LR+G+++G   +L ++G    +S+ERVR+LE 
Sbjct: 244 DYVEQESLRRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLER 303

Query: 534 RALYKLKRCCNSQGLAAYA 553
           +A+  L+R   S+ LA YA
Sbjct: 304 QAMDHLRR--RSRLLAEYA 318

[Close]

BLAST of Lcy04g011120 vs. ExPASy TrEMBL
Match: A0A0A0KEQ6 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1)

HSP 1 Score: 931.8 bits (2407), Expect = 1.3e-267
Identity = 490/562 (87.19%), Postives = 515/562 (91.64%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLHPSCS-----SSSSSSSSVSMFHEQATPARYFSTSF 60
           MEAGLNLLSSSSPFISRCHPRSFL PSCS     SSSSSSSSV MF EQA+PARYFSTSF
Sbjct: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60

Query: 61  LSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWP 120
           LSQEQHHECRPQSQ+LK+D++SQMTL+RRLIERSV  DE SR  HDHL+WELKHQA EWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 121 GLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDES 180
           GLLSSWP +QM EYKISS+ K+S N   E+LV+DEPENVIALAKKALSASKQ A LVDE+
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 181 ELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKT 240
           ELVGT LD SS  DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTI E  N RGKD+RRKT
Sbjct: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240

Query: 241 SENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE 300
           SE FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Sbjct: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300

Query: 301 WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLM 360
           WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAK+YQGRGLSLHDLLQ GSLGLM
Sbjct: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360

Query: 361 KSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRA 420
           KSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420

Query: 421 GNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDV 480
           GN KPSKEELAA VGITVER DKL+FMSRIPRSLQQPVWADQ+TTFQEITADSEVDTPDV
Sbjct: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480

Query: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENR 540
           SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540

Query: 541 ALYKLKRCCNSQGLAAYADLLT 557
           ALYKLKRCCNSQGL AYADLLT
Sbjct: 541 ALYKLKRCCNSQGLGAYADLLT 562

[Close]

BLAST of Lcy04g011120 vs. ExPASy TrEMBL
Match: A0A6J1CRW8 (RNA polymerase sigma factor sigF, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013756 PE=3 SV=1)

HSP 1 Score: 926.0 bits (2392), Expect = 7.3e-266
Identity = 482/524 (91.98%), Postives = 499/524 (95.23%), Query Frame = 0


Query: 38  VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESR 97
           V M H+QATPARYFSTSF+ QEQHHECRPQSQ+LK+DKTSQMTLDRRLIERSVS DE SR
Sbjct: 311 VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSR 370

Query: 98  SGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTD-REVLVEDEPENVIA 157
            GHDHLVWELKHQA EWPGLLSSWPSLQMGEYKISSV KQ NNT  RE+LVEDEPE+VIA
Sbjct: 371 IGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQPNNTSRREILVEDEPEDVIA 430

Query: 158 LAKKALSASKQVASLVDESELVGTDLDSSSSS---DSLSKEQRTVKSTKLQDRRSKKRRV 217
           LAKKALSASKQ ASLV+ESELVGT++DSSSSS   DSL KE   VKST+LQDRRSK+RRV
Sbjct: 431 LAKKALSASKQAASLVEESELVGTNIDSSSSSSSEDSLRKEGIAVKSTRLQDRRSKRRRV 490

Query: 218 PKHVTTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDL 277
           PKHVTTIHETYN RGKDTRRKT+ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDL
Sbjct: 491 PKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDL 550

Query: 278 MILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA 337
           MIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIA
Sbjct: 551 MILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIA 610

Query: 338 KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIR 397
           KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIR
Sbjct: 611 KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIR 670

Query: 398 LPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPV 457
           LPENVYGLLGKVTEAKN+FVR GN KPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPV
Sbjct: 671 LPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPV 730

Query: 458 WADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEK 517
           WADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEK
Sbjct: 731 WADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEK 790

Query: 518 TLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT 557
           TLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Sbjct: 791 TLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 834

[Close]

BLAST of Lcy04g011120 vs. ExPASy TrEMBL
Match: A0A1S4E3S8 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 896.3 bits (2315), Expect = 6.2e-257
Identity = 465/520 (89.42%), Postives = 486/520 (93.46%), Query Frame = 0


Query: 38  VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESR 97
           V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV  DE SR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 98  SGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIAL 157
           S HDHL+WELKHQA EWP LLSSWPSLQM EYKISS  K+S N   E+LV+DEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 158 AKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHV 217
           AKKALSASKQ A LVDESELVGT LD SS  DSLSKE RTV+ST+LQDRRSKKR+VPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 493

Query: 218 TTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILD 277
           TTIHET N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553

Query: 278 NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ 337
           NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y 
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613

Query: 338 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPEN 397
           GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673

Query: 398 VYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQ 457
           VY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLDKL+FMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733

Query: 458 DTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 517
           DTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793

Query: 518 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT 557
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of Lcy04g011120 vs. ExPASy TrEMBL
Match: A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 896.3 bits (2315), Expect = 6.2e-257
Identity = 465/520 (89.42%), Postives = 486/520 (93.46%), Query Frame = 0


Query: 38  VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESR 97
           V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV  DE SR
Sbjct: 312 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 371

Query: 98  SGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIAL 157
           S HDHL+WELKHQA EWP LLSSWPSLQM EYKISS  K+S N   E+LV+DEPENVIAL
Sbjct: 372 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 431

Query: 158 AKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHV 217
           AKKALSASKQ A LVDESELVGT LD SS  DSLSKE RTV+ST+LQDRRSKKR+VPKHV
Sbjct: 432 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 491

Query: 218 TTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILD 277
           TTIHET N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILD
Sbjct: 492 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 551

Query: 278 NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ 337
           NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y 
Sbjct: 552 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 611

Query: 338 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPEN 397
           GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPEN
Sbjct: 612 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 671

Query: 398 VYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQ 457
           VY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLDKL+FMSRIPRSLQQPVWADQ
Sbjct: 672 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 731

Query: 458 DTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 517
           DTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE
Sbjct: 732 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 791

Query: 518 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT 557
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Sbjct: 792 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831

[Close]

BLAST of Lcy04g011120 vs. ExPASy TrEMBL
Match: A0A5A7V893 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00350 PE=3 SV=1)

HSP 1 Score: 894.8 bits (2311), Expect = 1.8e-256
Identity = 464/520 (89.23%), Postives = 486/520 (93.46%), Query Frame = 0


Query: 38  VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESR 97
           V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV  DE SR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 98  SGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIAL 157
           S HDHL+WELKHQA EWP LLSSWPSLQM EYKISS  K+S N   E+LV+DEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 158 AKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHV 217
           AKKALSASKQ A LVDESELVGT LD SS  DSLSKE RTV+ST+LQ+RRSKKR+VPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQERRSKKRKVPKHV 493

Query: 218 TTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILD 277
           TTIHET N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553

Query: 278 NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ 337
           NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y 
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613

Query: 338 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPEN 397
           GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673

Query: 398 VYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQ 457
           VY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLDKL+FMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733

Query: 458 DTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 517
           DTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793

Query: 518 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT 557
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of Lcy04g011120 vs. NCBI nr
Match: XP_038882876.1 (RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida])

HSP 1 Score: 968.8 bits (2503), Expect = 2.0e-278
Identity = 509/557 (91.38%), Postives = 527/557 (94.61%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATPARYFSTSFLSQEQ 60
           MEAGLNLLSSSS FISRCHPRSFLHPSC SSSSSSSSVSMFHEQA PARYFSTSFLSQEQ
Sbjct: 1   MEAGLNLLSSSSLFISRCHPRSFLHPSC-SSSSSSSSVSMFHEQAIPARYFSTSFLSQEQ 60

Query: 61  HHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSS 120
           HHECRPQSQ+LK+D+TSQ TLDRRLIERSVS DE +RS HDHL+WE KHQA EWPGLLSS
Sbjct: 61  HHECRPQSQILKDDRTSQTTLDRRLIERSVSIDEGNRSDHDHLIWEFKHQAVEWPGLLSS 120

Query: 121 WPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGT 180
           WPSLQM EYKISSV KQS N   E+LV+DEPENVIALAKKALSASKQ ASLVDESELVGT
Sbjct: 121 WPSLQMEEYKISSVEKQSYNAGGEMLVKDEPENVIALAKKALSASKQAASLVDESELVGT 180

Query: 181 DLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENFD 240
           +LD +S  DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N +GKD+RRKT ENFD
Sbjct: 181 NLDYTSPDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIHETSNSKGKDSRRKTIENFD 240

Query: 241 PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL 300
           PNDPLRLFLWGPETKKLLTV+EESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
Sbjct: 241 PNDPLRLFLWGPETKKLLTVEEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL 300

Query: 301 GLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEK 360
           GLTCQRLQSQL SFR+SREKLINANLRMVVHIAK+YQGRGLSL DLLQEGSLGLMKSVEK
Sbjct: 301 GLTCQRLQSQLQSFRISREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSLGLMKSVEK 360

Query: 361 FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKP 420
           FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGN KP
Sbjct: 361 FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKP 420

Query: 421 SKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERE 480
           SKEELAA VGITVERLDKLLFMSRIPRSLQQPVW DQDTTFQEITADSE+DTPDVSVERE
Sbjct: 421 SKEELAARVGITVERLDKLLFMSRIPRSLQQPVWTDQDTTFQEITADSELDTPDVSVERE 480

Query: 481 LMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKL 540
           LMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKL
Sbjct: 481 LMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKL 540

Query: 541 KRCCNSQGLAAYADLLT 557
           KRC NSQGL AYADLLT
Sbjct: 541 KRCSNSQGLGAYADLLT 556

[Close]

BLAST of Lcy04g011120 vs. NCBI nr
Match: XP_031742499.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hypothetical protein Csa_003758 [Cucumis sativus])

HSP 1 Score: 931.8 bits (2407), Expect = 2.8e-267
Identity = 490/562 (87.19%), Postives = 515/562 (91.64%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLHPSCS-----SSSSSSSSVSMFHEQATPARYFSTSF 60
           MEAGLNLLSSSSPFISRCHPRSFL PSCS     SSSSSSSSV MF EQA+PARYFSTSF
Sbjct: 1   MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPARYFSTSF 60

Query: 61  LSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWP 120
           LSQEQHHECRPQSQ+LK+D++SQMTL+RRLIERSV  DE SR  HDHL+WELKHQA EWP
Sbjct: 61  LSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDDHDHLIWELKHQAVEWP 120

Query: 121 GLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDES 180
           GLLSSWP +QM EYKISS+ K+S N   E+LV+DEPENVIALAKKALSASKQ A LVDE+
Sbjct: 121 GLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAALLVDET 180

Query: 181 ELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKT 240
           ELVGT LD SS  DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTI E  N RGKD+RRKT
Sbjct: 181 ELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKT 240

Query: 241 SENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE 300
           SE FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Sbjct: 241 SEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVE 300

Query: 301 WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLM 360
           WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAK+YQGRGLSLHDLLQ GSLGLM
Sbjct: 301 WAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLM 360

Query: 361 KSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRA 420
           KSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNYFVRA
Sbjct: 361 KSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRA 420

Query: 421 GNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDV 480
           GN KPSKEELAA VGITVER DKL+FMSRIPRSLQQPVWADQ+TTFQEITADSEVDTPDV
Sbjct: 421 GNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITADSEVDTPDV 480

Query: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENR 540
           SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENR
Sbjct: 481 SVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLENR 540

Query: 541 ALYKLKRCCNSQGLAAYADLLT 557
           ALYKLKRCCNSQGL AYADLLT
Sbjct: 541 ALYKLKRCCNSQGLGAYADLLT 562

[Close]

BLAST of Lcy04g011120 vs. NCBI nr
Match: XP_022143971.1 (RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia])

HSP 1 Score: 926.0 bits (2392), Expect = 1.5e-265
Identity = 482/524 (91.98%), Postives = 499/524 (95.23%), Query Frame = 0


Query: 38  VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESR 97
           V M H+QATPARYFSTSF+ QEQHHECRPQSQ+LK+DKTSQMTLDRRLIERSVS DE SR
Sbjct: 311 VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSR 370

Query: 98  SGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTD-REVLVEDEPENVIA 157
            GHDHLVWELKHQA EWPGLLSSWPSLQMGEYKISSV KQ NNT  RE+LVEDEPE+VIA
Sbjct: 371 IGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQPNNTSRREILVEDEPEDVIA 430

Query: 158 LAKKALSASKQVASLVDESELVGTDLDSSSSS---DSLSKEQRTVKSTKLQDRRSKKRRV 217
           LAKKALSASKQ ASLV+ESELVGT++DSSSSS   DSL KE   VKST+LQDRRSK+RRV
Sbjct: 431 LAKKALSASKQAASLVEESELVGTNIDSSSSSSSEDSLRKEGIAVKSTRLQDRRSKRRRV 490

Query: 218 PKHVTTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDL 277
           PKHVTTIHETYN RGKDTRRKT+ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDL
Sbjct: 491 PKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDL 550

Query: 278 MILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA 337
           MIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIA
Sbjct: 551 MILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIA 610

Query: 338 KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIR 397
           KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIR
Sbjct: 611 KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIR 670

Query: 398 LPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPV 457
           LPENVYGLLGKVTEAKN+FVR GN KPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPV
Sbjct: 671 LPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPV 730

Query: 458 WADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEK 517
           WADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEK
Sbjct: 731 WADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEK 790

Query: 518 TLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT 557
           TLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Sbjct: 791 TLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 834

[Close]

BLAST of Lcy04g011120 vs. NCBI nr
Match: XP_016902883.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] >XP_016902884.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 896.3 bits (2315), Expect = 1.3e-256
Identity = 465/520 (89.42%), Postives = 486/520 (93.46%), Query Frame = 0


Query: 38  VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESR 97
           V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV  DE SR
Sbjct: 314 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 373

Query: 98  SGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIAL 157
           S HDHL+WELKHQA EWP LLSSWPSLQM EYKISS  K+S N   E+LV+DEPENVIAL
Sbjct: 374 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 433

Query: 158 AKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHV 217
           AKKALSASKQ A LVDESELVGT LD SS  DSLSKE RTV+ST+LQDRRSKKR+VPKHV
Sbjct: 434 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 493

Query: 218 TTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILD 277
           TTIHET N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILD
Sbjct: 494 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 553

Query: 278 NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ 337
           NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y 
Sbjct: 554 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 613

Query: 338 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPEN 397
           GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPEN
Sbjct: 614 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 673

Query: 398 VYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQ 457
           VY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLDKL+FMSRIPRSLQQPVWADQ
Sbjct: 674 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 733

Query: 458 DTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 517
           DTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE
Sbjct: 734 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 793

Query: 518 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT 557
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Sbjct: 794 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 833

[Close]

BLAST of Lcy04g011120 vs. NCBI nr
Match: XP_016902885.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 896.3 bits (2315), Expect = 1.3e-256
Identity = 465/520 (89.42%), Postives = 486/520 (93.46%), Query Frame = 0


Query: 38  VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESR 97
           V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV  DE SR
Sbjct: 312 VYMFSEQASPARYFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIERSVPIDEGSR 371

Query: 98  SGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIAL 157
           S HDHL+WELKHQA EWP LLSSWPSLQM EYKISS  K+S N   E+LV+DEPENVIAL
Sbjct: 372 SDHDHLIWELKHQAVEWPDLLSSWPSLQMEEYKISSFEKESYNAVGEMLVKDEPENVIAL 431

Query: 158 AKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHV 217
           AKKALSASKQ A LVDESELVGT LD SS  DSLSKE RTV+ST+LQDRRSKKR+VPKHV
Sbjct: 432 AKKALSASKQAALLVDESELVGTSLDYSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHV 491

Query: 218 TTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILD 277
           TTIHET N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILD
Sbjct: 492 TTIHETSNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESDLIVQIQDLMILD 551

Query: 278 NVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ 337
           NVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y 
Sbjct: 552 NVKAKLQSQFGREPTLVEWAEALGITCQQLQSQLHSFRTSREKLINANLRMVVHIAKQYL 611

Query: 338 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPEN 397
           GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPEN
Sbjct: 612 GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPEN 671

Query: 398 VYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQ 457
           VY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLDKL+FMSRIPRSLQQPVWADQ
Sbjct: 672 VYALLGKVTEAKNYLVRAGNYKPSKEELAAHVGITVERLDKLMFMSRIPRSLQQPVWADQ 731

Query: 458 DTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 517
           DTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE
Sbjct: 732 DTTYQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLE 791

Query: 518 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT 557
           IGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Sbjct: 792 IGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 831

[Close]

BLAST of Lcy04g011120 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 527.7 bits (1358), Expect = 1.1e-149
Identity = 311/571 (54.47%), Postives = 399/571 (69.88%), Query Frame = 0


Query: 1   MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATP-----------AR 60
           MEA  NL+SSS  F ++ H          SS SS SSV M H+Q T            +R
Sbjct: 1   MEATRNLVSSSPSFQTKTH--------LKSSYSSPSSVVMLHDQTTTPVVNSRHLNSLSR 60

Query: 61  YFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKH 120
           +F  S LSQE   E RP S  L++D+TSQ+TL+RR  +  VS  E+ +        +L H
Sbjct: 61  HFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDELVSSREDEK-----FEQQLLH 120

Query: 121 QADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVA 180
               W  L+S   S    E K+ +VV          L + E  +V+ALA+KALSASKQ A
Sbjct: 121 STGLWNLLISPLTS----ETKLPAVVSP--------LADAELCDVVALAQKALSASKQAA 180

Query: 181 SLVDESELVGT----DLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN 240
            LVD++E   +    D  S+SSS SL ++   V+S +  +RR+K RR PK      E Y 
Sbjct: 181 LLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYV 240

Query: 241 RGK-DTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS 300
             K   ++K  +  D +D L+LFLWGPETK+LLT +EE+ELI  IQ L+ L+ VK +L+S
Sbjct: 241 PQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLES 300

Query: 301 QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHD 360
           Q G EPT+ EWAEA+G++   L+S +H  R SREKLI ANLR+VVHIAK+YQ RGL+  D
Sbjct: 301 QNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 360

Query: 361 LLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKV 420
           LLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+IF++SRTIRLPENVY LLGKV
Sbjct: 361 LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 420

Query: 421 TEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEIT 480
           +EA+   V+ GN +PSKEELA HVG++ E+LDKLL+ +R P S+QQP+W+DQDTTFQEIT
Sbjct: 421 SEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEIT 480

Query: 481 ADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLS 540
            DS ++TP +SV ++LMR H+RNLL++LSPKERRII+LRFGI+ GK+++L EIG ++GLS
Sbjct: 481 PDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLS 540

Query: 541 KERVRQLENRALYKLKRCCNSQGLAAYADLL 556
           KERVRQLE+RALY+LK+  NS GL AYADLL
Sbjct: 541 KERVRQLESRALYRLKQNMNSHGLHAYADLL 546

[Close]

BLAST of Lcy04g011120 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 247.7 bits (631), Expect = 2.2e-65
Identity = 154/444 (34.68%), Postives = 253/444 (56.98%), Query Frame = 0


Query: 130 KISSVVKQSNNTDR------------EVLVEDEPENV---IALAKKALSASKQVASLVDE 189
           K +++ K SNNT+             +   E E   +   +A++   + + K  AS    
Sbjct: 126 KDATLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITAS-ASN 185

Query: 190 SELVGTDLDSSSSSD-SLSKEQRT----VKSTKLQDRRSKKRRVPKHVTTIHETYNRGKD 249
            E +G DL+S    +  L +EQ +    V+ST+  +R++++ +  +   +   +   G  
Sbjct: 186 KESIG-DLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSS 245

Query: 250 TRRK--TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFG 309
            ++K   ++  D NDPLR       + KLLTV+EE EL   IQDL+ L+ ++  L  + G
Sbjct: 246 PKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSG 305

Query: 310 REPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQ 369
           R+PT  +WA A G+  + L+ ++H   + ++K+I +N+R+V+ IAK YQG G++L DL+Q
Sbjct: 306 RQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 365

Query: 370 EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA 429
           EG  GL++  EKF    G +F+TYA+WWI+Q++RK++ + SR IRLP ++     +V EA
Sbjct: 366 EGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEA 425

Query: 430 KNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADS 489
           +          P  EE+A   G++++RL  +L   + PRSL Q +  +Q+    E+ AD 
Sbjct: 426 RKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADP 485

Query: 490 EVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKER 549
           E  T +  + +E MR+ +  +L  L  +E+++IR RFG+EDG+ KTL EIG M G+S+ER
Sbjct: 486 EAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRER 545

Query: 550 VRQLENRALYKLKRCCNSQGLAAY 552
           VRQ+E+ A  KLK    +  L  Y
Sbjct: 546 VRQIESSAFRKLKNKKRNNHLQQY 567

[Close]

BLAST of Lcy04g011120 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-42
Identity = 120/365 (32.88%), Postives = 185/365 (50.68%), Query Frame = 0


Query: 187 SSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRKTSENFDPNDPLRL 246
           SS  +  E+  ++S K + RR ++RRV        E  N G +   +T         + +
Sbjct: 63  SSVMIKPEKWGIQSEKRRKRR-RRRRVGYERLEPEEEENAGVEAEAET---------ISV 122

Query: 247 FLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRL 306
            + G      L+  EE +L + +++   L+N+   ++     E   V  A   G   +  
Sbjct: 123 PVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSA 182

Query: 307 QSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGC 366
              L   + +REK+     R+VV IA  YQG+GL+L DL+QEGS+GL++  E+F P  G 
Sbjct: 183 NEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGY 242

Query: 367 RFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAA 426
           + +TY YWWI+Q+I +AI   SR ++LP +++ L  KV EA N   R    +PS EE+A 
Sbjct: 243 KLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAE 302

Query: 427 HVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIR 486
           H+ + V  +   +  SR P SL +    +   T QEI    +   P+  V+RE M+  I 
Sbjct: 303 HLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIE 362

Query: 487 NLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQ 546
            LL  L+ +E R++ L FG+      +  EIG    LS+ERVRQ+   AL KL+   N  
Sbjct: 363 QLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVN 414

Query: 547 GLAAY 552
            L  Y
Sbjct: 423 DLKIY 414

[Close]

BLAST of Lcy04g011120 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-35
Identity = 105/422 (24.88%), Postives = 214/422 (50.71%), Query Frame = 0


Query: 134 VVKQSNNTDREVLVEDEPENVIALAKKALS---ASKQVASLVDESELVGTDLDSSSSSDS 193
           V   S   +R+++++        L K  LS    S   + L D +ELV T  +      S
Sbjct: 163 VALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSDTTELVDTTPNQQVFVSS 222

Query: 194 LSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRKTSENFDPNDPLRLFLWG 253
             K ++  + + +      +  +P  + T   T+N     R +    +            
Sbjct: 223 RRKVKKKARRSSVTAENGDQSSLPIGLRT---TWNNIDVPRVRRPPKY------------ 282

Query: 254 PETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQL 313
              K+    + E+E+   ++ +  ++ ++ +L+ + G+  +L  WA A G+  + L   L
Sbjct: 283 -RKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNL 342

Query: 314 HSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFAT 373
           H     R++L+ +   +V+ +A+ Y+G G++  DL+Q G +G+++  E+F    G +F+T
Sbjct: 343 HYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFST 402

Query: 374 YAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLK-PSKEELAAHVG 433
           Y  +WIR+S+   +  H+R + +P ++   +  + +A+     +  +K  + EE+A   G
Sbjct: 403 YVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTG 462

Query: 434 ITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLL 493
            +V+++       ++  S+ + V     T F E T D+ +++P+ +V R+  RR I +LL
Sbjct: 463 HSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLL 522

Query: 494 SILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLA 552
             L P+E++++ LR+G++D + K+L EIG +  +SKE +R++E RA+ KL+   N++ L 
Sbjct: 523 EGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLR 568

[Close]

BLAST of Lcy04g011120 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-33
Identity = 98/327 (29.97%), Postives = 174/327 (53.21%), Query Frame = 0


Query: 230 TRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGRE 289
           T  K   +      +R ++ G  ++ +L+  E   L  +I+  + LD+ K+RL+ + G E
Sbjct: 173 THVKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCE 232

Query: 290 PTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEG 349
           P+  + A +L ++   LQ+ L    ++REKL  +N+R+V+ IA++Y   G  + DL+Q G
Sbjct: 233 PSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGG 292

Query: 350 SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN 409
            +GL++ +EKF    G R +TY YWWIRQ + +A+ ++SRT+RLP +++  LG +  AK 
Sbjct: 293 LIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKL 352

Query: 410 YFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQD----TTFQEITA 469
                G + PS + +A  + ++ +++           SL +  +   +     T     A
Sbjct: 353 RLQEKG-ITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIA 412

Query: 470 DSEVD-TPDVSVERELMRRHIRNLLS-ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGL 529
           D+ ++  P    +   ++  +  L+S  L  +E+ IIRL +G+ D +  T  +I    GL
Sbjct: 413 DTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGL 472

Query: 530 SKERVRQLENRALYKLKRCCNSQGLAA 551
           S+ERVRQ+   AL KLK     + + A
Sbjct: 473 SRERVRQVGLVALEKLKHAARKRKMEA 497

The following BLAST results are available for this feature:

BLAST of Lcy04g011120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD95	1.6e-148	54.47	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
O22056	3.2e-64	34.68	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	2.7e-63	39.25	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	6.6e-62	41.33	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q31ME3	3.2e-56	39.81	RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]

BLAST of Lcy04g011120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEQ6	1.3e-267	87.19	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G446410 PE=3 SV=1	[more]
A0A6J1CRW8	7.3e-266	91.98	RNA polymerase sigma factor sigF, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A1S4E3S8	6.2e-257	89.42	RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S4E4I4	6.2e-257	89.42	RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
A0A5A7V893	1.8e-256	89.23	RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of Lcy04g011120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882876.1	2.0e-278	91.38	RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida]	[more]
XP_031742499.1	2.8e-267	87.19	RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] >KGN48180.1 hy...	[more]
XP_022143971.1	1.5e-265	91.98	RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia]	[more]
XP_016902883.1	1.3e-256	89.42	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis m...	[more]
XP_016902885.1	1.3e-256	89.42	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis m...	[more]

BLAST of Lcy04g011120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36990.1	1.1e-149	54.47	RNApolymerase sigma-subunit F	[more]
AT1G08540.1	2.2e-65	34.68	RNApolymerase sigma subunit 2	[more]
AT5G13730.1	2.0e-42	32.88	sigma factor 4	[more]
AT3G53920.1	1.1e-35	24.88	RNApolymerase sigma-subunit C	[more]
AT1G64860.1	1.3e-33	29.97	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 492..504 score: 43.67 coord: 344..357 score: 59.4 coord: 368..376 score: 75.05 coord: 528..539 score: 52.74 coord: 513..528 score: 49.64
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 513..539
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 344..357
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 3..556 e-value: 1.5E-159 score: 530.5
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 401..473 e-value: 1.6E-14 score: 53.7
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 320..389 e-value: 7.8E-19 score: 67.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 475..555 e-value: 2.7E-24 score: 86.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 393..470 e-value: 1.2E-8 score: 37.2
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 317..542 e-value: 2.4E-36 score: 122.8
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 488..540 e-value: 4.4E-17 score: 61.3
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 95..392 e-value: 1.4E-42 score: 148.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..215
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 20..555
None	No IPR available	PANTHER	PTHR30603:SF50	RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED	coord: 20..555
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 482..540 e-value: 2.01898E-11 score: 57.1142
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 240..390
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 393..466
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 451..549

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g011120.1	Lcy04g011120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity