Lcy04g007060 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g007060
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr04: 37210781 .. 37211180 (-)
RNA-Seq Expression	Lcy04g007060
Synteny	Lcy04g007060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGAAGCCGGAGCCGATCCGGGCGCAGTCGCCCCATTCTCCTTTGGAACACTGCTCAGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCGGTCGGTGGATTTCTTCAACCTAGAGTTGTAGTCCGTCGAATGGGCGACGCCATGGTCGAGGACGGTAGAGAACTTCGCAAACGCGACAGGAGAACAGGGGTATCCCGGAGAAAAATTCTTCGATCCGTTGGGATTTGCAGGAAGTATTAAGGATGGGGTTTACATTGCGGACTCGGAGAAGTTGAAGAGATTGAAGTTGGCGGAGATCAAGCATGCAAGGATCGCCATGTTAGCGATGTTCATCTTCTACTTCGAAGCTGGACAAGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA

mRNA sequence

ATGGTTCGAAGCCGGAGCCGATCCGGGCGCAGTCGCCCCATTCTCCTTTGGAACACTGCTCAGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCGGTCGGTGGATTTCTTCAACCTAGAGTTGTAGTCCGTCGAATGGGCGACGCCATGGTCGAGGACGGAAGTATTAAGGATGGGGTTTACATTGCGGACTCGGAGAAGTTGAAGAGATTGAAGTTGGCGGAGATCAAGCATGCAAGGATCGCCATGTTAGCGATGTTCATCTTCTACTTCGAAGCTGGACAAGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA

Coding sequence (CDS)

ATGGTTCGAAGCCGGAGCCGATCCGGGCGCAGTCGCCCCATTCTCCTTTGGAACACTGCTCAGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCGGTCGGTGGATTTCTTCAACCTAGAGTTGTAGTCCGTCGAATGGGCGACGCCATGGTCGAGGACGGAAGTATTAAGGATGGGGTTTACATTGCGGACTCGGAGAAGTTGAAGAGATTGAAGTTGGCGGAGATCAAGCATGCAAGGATCGCCATGTTAGCGATGTTCATCTTCTACTTCGAAGCTGGACAAGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA

Protein sequence

MVRSRSRSGRSRPILLWNTAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEIKHARIAMLAMFIFYFEAGQGKTPLGALGL

Homology

[Close]

BLAST of Lcy04g007060 vs. ExPASy Swiss-Prot
Match: P27524 (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-17
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+  G  G    G F  P  +           G++ +GVY+ D+EKL+RLK+AEI
Sbjct: 179 TAENFANFTGEQGYPG-GKFFDPLALA----------GTLNNGVYVPDTEKLERLKVAEI 238

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHAR+AMLAM IFYFEAGQGKTPLGALGL
Sbjct: 239 KHARLAMLAMLIFYFEAGQGKTPLGALGL 256

[Close]

BLAST of Lcy04g007060 vs. ExPASy Swiss-Prot
Match: P27525 (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10B PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-17
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+  G  G    G F  P  +           G++ +GVY+ D+EKL+RLKLAEI
Sbjct: 179 TAENFANFTGEQGYPG-GKFFDPLALA----------GTLNNGVYVPDTEKLERLKLAEI 238

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KH+R+AMLAM IFYFEAGQGKTPLGALGL
Sbjct: 239 KHSRLAMLAMLIFYFEAGQGKTPLGALGL 256

[Close]

BLAST of Lcy04g007060 vs. ExPASy Swiss-Prot
Match: P36494 (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N +++ G  G    G F  P  +           G+I +GVY  D++KL+RLKLAEI
Sbjct: 184 TAENFSNSTGEQGYPG-GKFFDPLSLA----------GTISNGVYNPDTDKLERLKLAEI 243

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHAR+AMLAM IFYFEAGQGKTPLGALGL
Sbjct: 244 KHARLAMLAMLIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of Lcy04g007060 vs. ExPASy TrEMBL
Match: A0A5N5FCU9 (Chlorophyll a-b binding protein, chloroplastic OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_042283 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 60/89 (67.42%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+A G  G    G F  P      +G A    GSIKDGVY+ DSEKL+RLKLAEI
Sbjct: 183 TAENFANATGEQGYPG-GKFFDP------LGLA----GSIKDGVYVPDSEKLERLKLAEI 242

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 243 KHARIAMLAMLIFYFEAGQGKTPLGALGL 260

[Close]

BLAST of Lcy04g007060 vs. ExPASy TrEMBL
Match: A0A0A0KEF5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G057170 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+A G  G    G F  P      +G A    G++KDGVYIAD+EKL+RLKLAEI
Sbjct: 178 TAENFANATGEQGYPG-GKFFDP------LGFA----GTLKDGVYIADTEKLERLKLAEI 237

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 238 KHARIAMLAMLIFYFEAGQGKTPLGALGL 255

[Close]

BLAST of Lcy04g007060 vs. ExPASy TrEMBL
Match: A0A6A5NXE8 (Chlorophyll a-b binding protein, chloroplastic OS=Lupinus albus OX=3870 GN=Lal_00024978 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A++ G  G    G F  P      +G A    G+IKDGVYIAD+EKL+RLKLAEI
Sbjct: 179 TAENFANSTGEQGYPG-GKFFDP------LGLA----GTIKDGVYIADTEKLERLKLAEI 238

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 239 KHARIAMLAMLIFYFEAGQGKTPLGALGL 256

[Close]

BLAST of Lcy04g007060 vs. ExPASy TrEMBL
Match: A0A6J1CL59 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012163 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 59/89 (66.29%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+A G  G    G F  P      +G A    GS+KDGVYI D+EKL+RLKLAEI
Sbjct: 181 TAENFANATGEQGYPG-GKFFDP------LGFA----GSLKDGVYIPDTEKLERLKLAEI 240

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 241 KHARIAMLAMLIFYFEAGQGKTPLGALGL 258

[Close]

BLAST of Lcy04g007060 vs. ExPASy TrEMBL
Match: A0A498HQ51 (Chlorophyll a-b binding protein, chloroplastic OS=Malus domestica OX=3750 GN=DVH24_016490 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 59/89 (66.29%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+A G  G    G F  P      +G A    GSI+DGVY+ DSEKL+RLKLAEI
Sbjct: 180 TAENFANATGEQGYPG-GKFFDP------LGLA----GSIQDGVYVPDSEKLERLKLAEI 239

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 240 KHARIAMLAMLIFYFEAGQGKTPLGALGL 257

[Close]

BLAST of Lcy04g007060 vs. NCBI nr
Match: KAB2598970.1 (chlorophyll a-b binding protein CP24 10A [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 60/89 (67.42%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+A G  G    G F  P      +G A    GSIKDGVY+ DSEKL+RLKLAEI
Sbjct: 183 TAENFANATGEQGYPG-GKFFDP------LGLA----GSIKDGVYVPDSEKLERLKLAEI 242

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 243 KHARIAMLAMLIFYFEAGQGKTPLGALGL 260

[Close]

BLAST of Lcy04g007060 vs. NCBI nr
Match: XP_009362479.1 (PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Pyrus x bretschneideri] >XP_009362480.1 PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 60/89 (67.42%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+A G  G    G F  P      +G A    GSIKDGVY+ DSEKL+RLKLAEI
Sbjct: 180 TAENFANATGEQGYPG-GKFFDP------LGLA----GSIKDGVYVPDSEKLERLKLAEI 239

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 240 KHARIAMLAMLIFYFEAGQGKTPLGALGL 257

[Close]

BLAST of Lcy04g007060 vs. NCBI nr
Match: XP_004140973.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis sativus] >KGN46151.1 hypothetical protein Csa_005752 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+A G  G    G F  P      +G A    G++KDGVYIAD+EKL+RLKLAEI
Sbjct: 178 TAENFANATGEQGYPG-GKFFDP------LGFA----GTLKDGVYIADTEKLERLKLAEI 237

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 238 KHARIAMLAMLIFYFEAGQGKTPLGALGL 255

[Close]

BLAST of Lcy04g007060 vs. NCBI nr
Match: KAE9605473.1 (putative chlorophyll A-B binding protein [Lupinus albus] >KAF1889651.1 hypothetical protein Lal_00024978 [Lupinus albus])

HSP 1 Score: 98.2 bits (243), Expect = 4.5e-17
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A++ G  G    G F  P      +G A    G+IKDGVYIAD+EKL+RLKLAEI
Sbjct: 179 TAENFANSTGEQGYPG-GKFFDP------LGLA----GTIKDGVYIADTEKLERLKLAEI 238

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 239 KHARIAMLAMLIFYFEAGQGKTPLGALGL 256

[Close]

BLAST of Lcy04g007060 vs. NCBI nr
Match: XP_022141907.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 4.5e-17
Identity = 59/89 (66.29%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N A+A G  G    G F  P      +G A    GS+KDGVYI D+EKL+RLKLAEI
Sbjct: 181 TAENFANATGEQGYPG-GKFFDP------LGFA----GSLKDGVYIPDTEKLERLKLAEI 240

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KHARIAMLAM IFYFEAGQGKTPLGALGL
Sbjct: 241 KHARIAMLAMLIFYFEAGQGKTPLGALGL 258

[Close]

BLAST of Lcy04g007060 vs. TAIR 10
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6 )

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 19  TAQNPASANGMGGEQAVGGFLQPRVVVRRMGDAMVEDGSIKDGVYIADSEKLKRLKLAEI 78
           TA+N   AN  G +   GG         R  D +   G  +DGVY  D EKL+RLKLAEI
Sbjct: 181 TAEN--FANYTGDQGYPGG---------RFFDPLGLAGKNRDGVYEPDFEKLERLKLAEI 240

Query: 79  KHARIAMLAMFIFYFEAGQGKTPLGALGL 108
           KH+R+AM+AM IFYFEAGQGKTPLGALGL
Sbjct: 241 KHSRLAMVAMLIFYFEAGQGKTPLGALGL 258

[Close]

BLAST of Lcy04g007060 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 65  ADSEKLKRLKLAEIKHARIAMLAMFIFYFEAG-QGKTPLGAL 106
           AD EKL  LKLAEIKH+R+AM+A  IF  +A   GK P+  L
Sbjct: 230 ADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271

The following BLAST results are available for this feature:

BLAST of Lcy04g007060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27524	3.6e-17	56.18	Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum ...	[more]
P27525	3.6e-17	56.18	Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum ...	[more]
P36494	1.8e-16	56.18	Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562...	[more]

BLAST of Lcy04g007060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5FCU9	9.9e-18	67.42	Chlorophyll a-b binding protein, chloroplastic OS=Pyrus ussuriensis x Pyrus comm...	[more]
A0A0A0KEF5	1.3e-17	66.29	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6A5NXE8	2.2e-17	66.29	Chlorophyll a-b binding protein, chloroplastic OS=Lupinus albus OX=3870 GN=Lal_0...	[more]
A0A6J1CL59	2.2e-17	66.29	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A498HQ51	2.9e-17	66.29	Chlorophyll a-b binding protein, chloroplastic OS=Malus domestica OX=3750 GN=DVH...	[more]

BLAST of Lcy04g007060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB2598970.1	2.0e-17	67.42	chlorophyll a-b binding protein CP24 10A [Pyrus ussuriensis x Pyrus communis]	[more]
XP_009362479.1	2.0e-17	67.42	PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Pyrus x...	[more]
XP_004140973.1	2.7e-17	66.29	chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis sativus] >KGN46...	[more]
KAE9605473.1	4.5e-17	66.29	putative chlorophyll A-B binding protein [Lupinus albus] >KAF1889651.1 hypotheti...	[more]
XP_022141907.1	4.5e-17	66.29	chlorophyll a-b binding protein CP24 10A, chloroplastic [Momordica charantia]	[more]

BLAST of Lcy04g007060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15820.1	1.1e-16	57.30	light harvesting complex photosystem II subunit 6	[more]
AT2G40100.1	1.2e-04	57.14	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..95 e-value: 1.4E-7 score: 32.1
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 16..106 e-value: 1.1E-9 score: 40.4
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 59..107
None	No IPR available	PANTHER	PTHR21649:SF2	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 59..107
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 65..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g007060.1	Lcy04g007060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding