Lcy04g007000 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g007000
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 37150024 .. 37150431 (+)
RNA-Seq ExpressionLcy04g007000
SyntenyLcy04g007000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGAAGCTAAAGCGATCGAGGAAGGAATCAAATTTTTTTCAGGGAAAATCATAGAGTACCCGTTACTGCTCAATCATCTGTTGGTGGTTGAGTCTAATGCCTCTGAGATAATTAGGCTCATCAATGGGGAAGCGGAAGACAATTCAAATATCTCCCTGTTGATAGACGAAATTGGAAGAATGGTGGGGCTTGCGAATGTAACCTCTTTCGTTTTCTGTCCTAGGGTTGGTAATTTTTTGGCGCAAAGTGTAGCGTGCGCAGTAGCCTTCAATGGTGACTTTAGTTTTATTAATTTTGATCCTTCTCAGCCCTTGAGAATGGATTCCGCCCATGATCAGTGTAAGGGCTGGTTCTTCTCCATTTTGGAGAAAATTGTTGATGTTCCACTTGTTCCGTTCTTTTAA

mRNA sequence

ATGCTGGAAGCTAAAGCGATCGAGGAAGGAATCAAATTTTTTTCAGGGAAAATCATAGAGTACCCGTTACTGCTCAATCATCTGTTGGTGGTTGAGTCTAATGCCTCTGAGATAATTAGGCTCATCAATGGGGAAGCGGAAGACAATTCAAATATCTCCCTGTTGATAGACGAAATTGGAAGAATGGTGGGGCTTGCGAATGTAACCTCTTTCGTTTTCTGTCCTAGGGTTGGTAATTTTTTGGCGCAAAGTGTAGCGTGCGCAGTAGCCTTCAATGGTGACTTTAGTTTTATTAATTTTGATCCTTCTCAGCCCTTGAGAATGGATTCCGCCCATGATCAGTGTAAGGGCTGGTTCTTCTCCATTTTGGAGAAAATTGTTGATGTTCCACTTGTTCCGTTCTTTTAA

Coding sequence (CDS)

ATGCTGGAAGCTAAAGCGATCGAGGAAGGAATCAAATTTTTTTCAGGGAAAATCATAGAGTACCCGTTACTGCTCAATCATCTGTTGGTGGTTGAGTCTAATGCCTCTGAGATAATTAGGCTCATCAATGGGGAAGCGGAAGACAATTCAAATATCTCCCTGTTGATAGACGAAATTGGAAGAATGGTGGGGCTTGCGAATGTAACCTCTTTCGTTTTCTGTCCTAGGGTTGGTAATTTTTTGGCGCAAAGTGTAGCGTGCGCAGTAGCCTTCAATGGTGACTTTAGTTTTATTAATTTTGATCCTTCTCAGCCCTTGAGAATGGATTCCGCCCATGATCAGTGTAAGGGCTGGTTCTTCTCCATTTTGGAGAAAATTGTTGATGTTCCACTTGTTCCGTTCTTTTAA

Protein sequence

MLEAKAIEEGIKFFSGKIIEYPLLLNHLLVVESNASEIIRLINGEAEDNSNISLLIDEIGRMVGLANVTSFVFCPRVGNFLAQSVACAVAFNGDFSFINFDPSQPLRMDSAHDQCKGWFFSILEKIVDVPLVPFF
Homology
The following BLAST results are available for this feature:
BLAST of Lcy04g007000 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g007000 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g007000 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g007000 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 29..86
e-value: 3.0E-5
score: 23.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g007000.1Lcy04g007000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity