Lcy04g005790 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g005790
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr04: 34656819 .. 34657518 (+)
RNA-Seq Expression	Lcy04g005790
Synteny	Lcy04g005790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCATCAGATGATCAAAGATGAGGAGGAGTTCATAATGCATGTTGATGCGGCATGTGATGTGGGAAATAAAATTATTGGAATTGGTGTGGTGATACGAGACTCTCATGGTCATTTGAAGATTGTGTTATCCAACAATTCATTAACTTTTATGAATCCTTTATGTGCGGAGGCTGTAGCTGTTCTTGAGGGTCTTCGATTGGCGAGCAACTCCAAAATGAGTTGGGTGACAGTAATATCAGACTCACTTTCCTTAATCTCGATTCTCAAAAAGGAAAGACTGGTTGAAATGGACTGTGCCACAGTTATTTGGGATATCAATCAAATCAGGGAGTCTTTTCAGGAGGTTCATTTCTATCATGTGAATCGTGAATTTAACTTGTTAGCGCATGAATTAGCCCGATTGGGTTTGTCATCATCTCCATGTATGTGGTTTTCAAACTTTCCAGACTGGATTGTGTCGTTAGCTTCTAACGAGCTATCGATTTTTGTATCCCCTGGGGATTTTTTATTGTTATTCAATGAATGTTCTTATTTTAAAAATAAAAAAAAAAAAAAAAAACTATTTCCTAAATCTAGACTTGATTGTCCGATTTTGAAACTTAGAGACTCAATAGACCGCCTCAAATATGAGGGACAAAAAGGTATTTTATCTAAATTTATTTTTAATGAAGTGTCCAATCATTCTTATACTATAA

mRNA sequence

ATGGTGCATCAGATGATCAAAGATGAGGAGGAGTTCATAATGCATGTTGATGCGGCATGTGATGTGGGAAATAAAATTATTGGAATTGGTGTGGTGATACGAGACTCTCATGGTCATTTGAAGATTGTGTTATCCAACAATTCATTAACTTTTATGAATCCTTTATGTGCGGAGGCTGTAGCTGTTCTTGAGGGTCTTCGATTGGCGAGCAACTCCAAAATGAGTTGGGTGACAGTAATATCAGACTCACTTTCCTTAATCTCGATTCTCAAAAAGGAAAGACTGGTTGAAATGGACTGTGCCACAGTTATTTGGGATATCAATCAAATCAGGGAGTCTTTTCAGGAGTGTCCAATCATTCTTATACTATAA

Coding sequence (CDS)

ATGGTGCATCAGATGATCAAAGATGAGGAGGAGTTCATAATGCATGTTGATGCGGCATGTGATGTGGGAAATAAAATTATTGGAATTGGTGTGGTGATACGAGACTCTCATGGTCATTTGAAGATTGTGTTATCCAACAATTCATTAACTTTTATGAATCCTTTATGTGCGGAGGCTGTAGCTGTTCTTGAGGGTCTTCGATTGGCGAGCAACTCCAAAATGAGTTGGGTGACAGTAATATCAGACTCACTTTCCTTAATCTCGATTCTCAAAAAGGAAAGACTGGTTGAAATGGACTGTGCCACAGTTATTTGGGATATCAATCAAATCAGGGAGTCTTTTCAGGAGTGTCCAATCATTCTTATACTATAA

Protein sequence

MVHQMIKDEEEFIMHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASNSKMSWVTVISDSLSLISILKKERLVEMDCATVIWDINQIRESFQECPIILIL

Homology

[Close]

BLAST of Lcy04g005790 vs. ExPASy TrEMBL
Match: A0A5C7IIT4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 14  MHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASNSK 73
           ++ DA  D   K+ GIGVVIRD +GH+   L  +    + P   EAVAVL G RLA  + 
Sbjct: 712 INTDATLDCRAKVTGIGVVIRDCYGHVMASLCQSFPGLLQPQTVEAVAVLRGFRLALEAG 771

Query: 74  MSWVTVISDSLSLISILKKERLVEMDCATVIWDI 108
           +   ++ SDSLS+++++    ++  +   V+ DI
Sbjct: 772 LCPASIESDSLSVVNLINSMDILRAEIGVVLHDI 805

[Close]

BLAST of Lcy04g005790 vs. ExPASy TrEMBL
Match: A0A2I4HSP0 (uncharacterized protein LOC109021081 OS=Juglans regia OX=51240 GN=LOC109021081 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.9e-05
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 17  DAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASNSKMSW 76
           D+A D  N +IG+GV +RDS G+       N L F NPL A+A   L+ ++      +S 
Sbjct: 236 DSAVDKANGVIGVGVAVRDSLGYTIATKKTNKLLFPNPLLAKAFGALKAVQFGVELGLSQ 295

Query: 77  VTVISDSLSLISILKKER 95
           V V  DSL +I+IL+ ++
Sbjct: 296 VVVEGDSLQVINILRSDK 313

[Close]

BLAST of Lcy04g005790 vs. ExPASy TrEMBL
Match: A0A5C7GQX3 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 12  FIMHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASN 71
           F ++ DAA +V     GIGVVIR+  G + +    N  T  +P+ AEA+AVLEGLRLA  
Sbjct: 89  FKINTDAALNVQGNSAGIGVVIRNFRGQVMLSSCKNFRTAFSPVIAEALAVLEGLRLAKL 148

Query: 72  SKMSWVTVISDSLSLISILKKERLVEMDCATVIWDI 108
                  + SD+L+++  + +   +  D   VI DI
Sbjct: 149 GGFFPTVLESDALTVVQDICRNESLSSDVGLVIDDI 184

[Close]

BLAST of Lcy04g005790 vs. ExPASy TrEMBL
Match: A0A5C7ICQ3 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_007481 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 12  FIMHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASN 71
           F ++ DAA    +K+ GIGVVI+D+  H++  L  N   +  P  AEA+A+L+GL LA N
Sbjct: 183 FKINTDAALHSSDKVSGIGVVIQDNDAHVRASLCQNLSAYFQPQIAEALAILKGLFLALN 242

Query: 72  SKMSWVTVISDSLSLISILKKERLVEMDCATVIWDINQIRESFQECPIILIL 124
           +      + SD+L++++ +  + +   +   VI D+ ++        I  +L
Sbjct: 243 NGFVPAVLESDALTVVNSICLKMVPCNEVGVVIHDVLRLLNDVDSFSINYVL 294

[Close]

BLAST of Lcy04g005790 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 14  MHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASNSK 73
           ++VD AC        IG+V R+  G +    S     + +PL AE++A+LEGLRLA +  
Sbjct: 35  INVDVACKKHQFRTAIGIVCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLRLADHLN 94

Query: 74  MSWVTVISDSLSLISILKKERLVEMDCATVIW--DINQIRESF 115
           +  V   SDSL LI++L ++ +    C + +W  DI  +  +F
Sbjct: 95  IQQVQFESDSLQLINLLTEDPI--SWCGSNVWLEDIRVLARNF 135

[Close]

BLAST of Lcy04g005790 vs. NCBI nr
Match: TXG69190.1 (hypothetical protein EZV62_004125 [Acer yangbiense])

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-06
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 14  MHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASNSK 73
           ++ DA  D   K+ GIGVVIRD +GH+   L  +    + P   EAVAVL G RLA  + 
Sbjct: 712 INTDATLDCRAKVTGIGVVIRDCYGHVMASLCQSFPGLLQPQTVEAVAVLRGFRLALEAG 771

Query: 74  MSWVTVISDSLSLISILKKERLVEMDCATVIWDI 108
           +   ++ SDSLS+++++    ++  +   V+ DI
Sbjct: 772 LCPASIESDSLSVVNLINSMDILRAEIGVVLHDI 805

[Close]

BLAST of Lcy04g005790 vs. NCBI nr
Match: XP_018859164.1 (uncharacterized protein LOC109021081, partial [Juglans regia] >KAF5442049.1 hypothetical protein F2P56_036930, partial [Juglans regia])

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 17  DAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASNSKMSW 76
           D+A D  N +IG+GV +RDS G+       N L F NPL A+A   L+ ++      +S 
Sbjct: 236 DSAVDKANGVIGVGVAVRDSLGYTIATKKTNKLLFPNPLLAKAFGALKAVQFGVELGLSQ 295

Query: 77  VTVISDSLSLISILKKER 95
           V V  DSL +I+IL+ ++
Sbjct: 296 VVVEGDSLQVINILRSDK 313

[Close]

BLAST of Lcy04g005790 vs. NCBI nr
Match: TXG47194.1 (hypothetical protein EZV62_026488 [Acer yangbiense])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 12  FIMHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASN 71
           F ++ DAA +V     GIGVVIR+  G + +    N  T  +P+ AEA+AVLEGLRLA  
Sbjct: 89  FKINTDAALNVQGNSAGIGVVIRNFRGQVMLSSCKNFRTAFSPVIAEALAVLEGLRLAKL 148

Query: 72  SKMSWVTVISDSLSLISILKKERLVEMDCATVIWDI 108
                  + SD+L+++  + +   +  D   VI DI
Sbjct: 149 GGFFPTVLESDALTVVQDICRNESLSSDVGLVIDDI 184

[Close]

BLAST of Lcy04g005790 vs. NCBI nr
Match: TXG66206.1 (hypothetical protein EZV62_007481 [Acer yangbiense])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 12  FIMHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASN 71
           F ++ DAA    +K+ GIGVVI+D+  H++  L  N   +  P  AEA+A+L+GL LA N
Sbjct: 183 FKINTDAALHSSDKVSGIGVVIQDNDAHVRASLCQNLSAYFQPQIAEALAILKGLFLALN 242

Query: 72  SKMSWVTVISDSLSLISILKKERLVEMDCATVIWDINQIRESFQECPIILIL 124
           +      + SD+L++++ +  + +   +   VI D+ ++        I  +L
Sbjct: 243 NGFVPAVLESDALTVVNSICLKMVPCNEVGVVIHDVLRLLNDVDSFSINYVL 294

[Close]

BLAST of Lcy04g005790 vs. NCBI nr
Match: XP_042954689.1 (uncharacterized protein LOC122291107 [Carya illinoinensis])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 32/107 (29.91%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 14  MHVDAACDVGNKIIGIGVVIRDSHGHLKIVLSNNSLTFMNPLCAEAVAVLEGLRLASNSK 73
           +++D A    + I+GIGVV+RD +G + +  S            EAVA+L GL+L +   
Sbjct: 192 LNIDGATFPEHSIVGIGVVLRDQYGEVVVACSKVEKEVSFVEFIEAVALLRGLQLCAQWG 251

Query: 74  MSWVTVISDSLSLISILKKERLVEMDCATVIWDINQIRESFQECPII 121
           +  + + +D L L++ L +  +   D A ++ DI ++ E FQE  ++
Sbjct: 252 VPKIMLETDCLVLVNALNENSVCLTDFAFILQDIQRLMEGFQEVKLV 298

The following BLAST results are available for this feature:

BLAST of Lcy04g005790 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g005790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7IIT4	2.0e-06	36.17	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1	[more]
A0A2I4HSP0	4.9e-05	38.46	uncharacterized protein LOC109021081 OS=Juglans regia OX=51240 GN=LOC109021081 P...	[more]
A0A5C7GQX3	1.1e-04	37.50	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 ...	[more]
A0A5C7ICQ3	2.4e-04	30.36	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_007481 ...	[more]
A0A6J1CNR4	2.4e-04	33.98	uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of Lcy04g005790 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG69190.1	4.1e-06	36.17	hypothetical protein EZV62_004125 [Acer yangbiense]	[more]
XP_018859164.1	1.0e-04	38.46	uncharacterized protein LOC109021081, partial [Juglans regia] >KAF5442049.1 hypo...	[more]
TXG47194.1	2.3e-04	37.50	hypothetical protein EZV62_026488 [Acer yangbiense]	[more]
TXG66206.1	5.1e-04	30.36	hypothetical protein EZV62_007481 [Acer yangbiense]	[more]
XP_042954689.1	5.1e-04	29.91	uncharacterized protein LOC122291107 [Carya illinoinensis]	[more]

BLAST of Lcy04g005790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 16..121 e-value: 2.6E-16 score: 59.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 11..121 e-value: 9.1E-9 score: 37.4
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 16..119 e-value: 2.49335E-13 score: 59.6352
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 12..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g005790.1	Lcy04g005790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity