Lcy04g005710 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g005710
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CACTA en-spm transposon protein
Location	Chr04: 34507278 .. 34508272 (+)
RNA-Seq Expression	Lcy04g005710
Synteny	Lcy04g005710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATTGATGGAGTTTTAAGTCATCCGGCAGATGTTGAGGCATGGAAACACTTCAACAGACAATATGATTGGTTTGCAAACGATCCAAGGAATGTAAGATTAGCTCTAGCTACTGATGGATTCAACCCATTTGACAATATGAGTACATCATACAGTACCTGACCAGTGATATTAATTCCATAGAACTTGCCACCATGGAAATGCATGAAGGAAACATTTTTCTTTATGTCTTTACTTATACTGGGGCCAAAGTCTCCAGGAAAAGAGATAGATATATATTTACAGCCACTGATAGAAGAATTGAAGGATTTATGGAGTAATGGCATAGAGACTTATGATGCTTATAGTGGTCAAAACTTTCGTCTTCATGCAGCTTTGATGTGGACAATTAATGATTTTCCAGCGTACGATAATTTGTCAGGATGGAGCACAAAAGGATATAAAGCATGTCCAGTTTGTCTCATCTGATTCATTGCATAGTAAGATATGTTATACAGGACATCGTCGTTACTTACCTATGAATCATTCTTGACGGAAAAACAAACAATTTAATGGCAAAACAGAATATAGAGTGGCACCTCGATCTTTGTCGGGATTAGATGTTCTTCATTCTTGCCTCCCAAGCACATGTATTTTATGTTGACGATATTCAATTAGGTCATGGGTGGAAGATAGTTCAAAAAGTTGATCATAGACATTTATGGGATGTGGCTGAAATAGAAGAAACTAATCCACCTGAAATAGATATGCATGAATGTGTAGTTCAAGATATAGATTTTGAAACACAAACATTTCATAGAGTTGATGTGAATCCAATCATAGTTTCTGAAAGTAGTGATATGAGTGAAAAAATGTTGAATTTGGAAGAACAAATAGAAGAAGAGGAAGATGATGAAGATGATGAAGCAGATGAAGGTGAAGAAGAAGAAGATGAAGACGAGCATGAAAGATCATCGTTAAATAGCGATGAATTGATGTCGACATGTAGTTAG

mRNA sequence

ATGAATATTGATGGAGTTTTAAGTCATCCGGCAGATGTTGAGGCATGGAAACACTTCAACAGACAATATGATTGGTTTGCAAACGATCCAAGGAATGATGGAGCACAAAAGGATATAAAGCATGTCCAGTTTGTCTCATCTGATTCATTGCATAGTCATGGGTGGAAGATAGTTCAAAAAGTTGATCATAGACATTTATGGGATGTGGCTGAAATAGAAGAAACTAATCCACCTGAAATAGATATGCATGAATGTGTAGTTCAAGATATAGATTTTGAAACACAAACATTTCATAGAGTTGATGTGAATCCAATCATAGTTTCTGAAAGTAGTGATATGAGTGAAAAAATGTTGAATTTGGAAGAACAAATAGAAGAAGAGGAAGATGATGAAGATGATGAAGCAGATGAAGGTGAAGAAGAAGAAGATGAAGACGAGCATGAAAGATCATCGTTAAATAGCGATGAATTGATGTCGACATGTAGTTAG

Coding sequence (CDS)

ATGAATATTGATGGAGTTTTAAGTCATCCGGCAGATGTTGAGGCATGGAAACACTTCAACAGACAATATGATTGGTTTGCAAACGATCCAAGGAATGATGGAGCACAAAAGGATATAAAGCATGTCCAGTTTGTCTCATCTGATTCATTGCATAGTCATGGGTGGAAGATAGTTCAAAAAGTTGATCATAGACATTTATGGGATGTGGCTGAAATAGAAGAAACTAATCCACCTGAAATAGATATGCATGAATGTGTAGTTCAAGATATAGATTTTGAAACACAAACATTTCATAGAGTTGATGTGAATCCAATCATAGTTTCTGAAAGTAGTGATATGAGTGAAAAAATGTTGAATTTGGAAGAACAAATAGAAGAAGAGGAAGATGATGAAGATGATGAAGCAGATGAAGGTGAAGAAGAAGAAGATGAAGACGAGCATGAAAGATCATCGTTAAATAGCGATGAATTGATGTCGACATGTAGTTAG

Protein sequence

MNIDGVLSHPADVEAWKHFNRQYDWFANDPRNDGAQKDIKHVQFVSSDSLHSHGWKIVQKVDHRHLWDVAEIEETNPPEIDMHECVVQDIDFETQTFHRVDVNPIIVSESSDMSEKMLNLEEQIEEEEDDEDDEADEGEEEEDEDEHERSSLNSDELMSTCS

Homology

[Close]

BLAST of Lcy04g005710 vs. ExPASy TrEMBL
Match: A0A6J1D6Q8 (uncharacterized protein LOC111017452 OS=Momordica charantia OX=3673 GN=LOC111017452 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13
Identity = 52/129 (40.31%), Postives = 84/129 (65.12%), Query Frame = 0


Query: 25  WFANDPRNDGAQKDIKHVQFVSSDSLHSHGWKIVQKVDHRHLWDVAEIEETNPPEIDMHE 84
           W+ +DP    +Q       F   D    +GWK+ QK+ HRHLWDV E+EE +  E+D+++
Sbjct: 148 WYKDDPFILVSQ---AQQVFYVGDLQLGNGWKVAQKIQHRHLWDVPEVEEIDLVEVDINQ 207

Query: 85  CVVQDIDFETQTFHRVDVNPIIVSESSDMSEKMLNLEEQIEEEEDDEDDEADEGEEEEDE 144
           CVV +++ ETQTFHR D++P IVS+++   E +LN +E +++E +DED++ DE +E    
Sbjct: 208 CVVDEVNLETQTFHRSDIDPSIVSDNTSTIEIVLNFDE-VQDEIEDEDEDEDEYDETTSS 267

Query: 145 DEHERSSLN 154
           DE + S ++
Sbjct: 268 DEIDDSDID 272

[Close]

BLAST of Lcy04g005710 vs. ExPASy TrEMBL
Match: A0A5D3DTF0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002540 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-05
Identity = 46/192 (23.96%), Postives = 65/192 (33.85%), Query Frame = 0


Query: 4   DGVLSHPADVEAWKHFNRQYDWFANDPRNDGAQKDIKHVQFV------------------ 63
           D VL HPAD E WKHF+ +Y  FA DP NDG Q  I+HV +                   
Sbjct: 60  DDVLRHPADAEGWKHFDSEYPDFAYDPSNDGVQMGIRHVLYAWVIDRPSGYEVDYLSWNI 119

Query: 64  ------------------------------SSDSLHSHG--------------------- 108
                                          SD  + +G                     
Sbjct: 120 DAIFQRTTCGVDLGYTMESGVMVIGESDASGSDDNNFYGVLDEVLHVQYPLRRNVWLFKC 179

[Close]

BLAST of Lcy04g005710 vs. NCBI nr
Match: XP_022148890.1 (uncharacterized protein LOC111017452 [Momordica charantia] >XP_022148891.1 uncharacterized protein LOC111017452 [Momordica charantia] >XP_022148892.1 uncharacterized protein LOC111017452 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 6.0e-13
Identity = 52/129 (40.31%), Postives = 84/129 (65.12%), Query Frame = 0


Query: 25  WFANDPRNDGAQKDIKHVQFVSSDSLHSHGWKIVQKVDHRHLWDVAEIEETNPPEIDMHE 84
           W+ +DP    +Q       F   D    +GWK+ QK+ HRHLWDV E+EE +  E+D+++
Sbjct: 148 WYKDDPFILVSQ---AQQVFYVGDLQLGNGWKVAQKIQHRHLWDVPEVEEIDLVEVDINQ 207

Query: 85  CVVQDIDFETQTFHRVDVNPIIVSESSDMSEKMLNLEEQIEEEEDDEDDEADEGEEEEDE 144
           CVV +++ ETQTFHR D++P IVS+++   E +LN +E +++E +DED++ DE +E    
Sbjct: 208 CVVDEVNLETQTFHRSDIDPSIVSDNTSTIEIVLNFDE-VQDEIEDEDEDEDEYDETTSS 267

Query: 145 DEHERSSLN 154
           DE + S ++
Sbjct: 268 DEIDDSDID 272

[Close]

BLAST of Lcy04g005710 vs. NCBI nr
Match: KAA0051834.1 (uncharacterized protein E6C27_scaffold60G002600 [Cucumis melo var. makuwa] >TYK21412.1 uncharacterized protein E5676_scaffold609G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 4   DGVLSHPADVEAWKHFNRQYDWFANDPRNDGAQKDIKHVQF 45
           D VL HP D E WKHF+ +Y  FA+DPRN G Q+ I+HV +
Sbjct: 237 DDVLRHPTDTEGWKHFDSKYPDFASDPRNGGVQRGIRHVLY 277

[Close]

BLAST of Lcy04g005710 vs. NCBI nr
Match: KAA0062362.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26615.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 46/192 (23.96%), Postives = 65/192 (33.85%), Query Frame = 0


Query: 4   DGVLSHPADVEAWKHFNRQYDWFANDPRNDGAQKDIKHVQFV------------------ 63
           D VL HPAD E WKHF+ +Y  FA DP NDG Q  I+HV +                   
Sbjct: 60  DDVLRHPADAEGWKHFDSEYPDFAYDPSNDGVQMGIRHVLYAWVIDRPSGYEVDYLSWNI 119

Query: 64  ------------------------------SSDSLHSHG--------------------- 108
                                          SD  + +G                     
Sbjct: 120 DAIFQRTTCGVDLGYTMESGVMVIGESDASGSDDNNFYGVLDEVLHVQYPLRRNVWLFKC 179

[Close]

BLAST of Lcy04g005710 vs. NCBI nr
Match: KAA0065615.1 (wall-associated receptor kinase-like 10 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-04
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 4   DGVLSHPADVEAWKHFNRQYDWFANDPRNDGAQKDIKHVQFVS 47
           D VL HP D E WKHF+ ++  F+ +PRNDG ++DI+HV + S
Sbjct: 100 DDVLRHPTDAEGWKHFDCEFPNFSPNPRNDGVRRDIRHVPYGS 142

[Close]

BLAST of Lcy04g005710 vs. NCBI nr
Match: KAA0066710.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-04
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 4   DGVLSHPADVEAWKHFNRQYDWFANDPRNDGAQKDIKHVQF 45
           D VL HPAD E WKHF+ +Y  FA +PRN G Q+ I+HV +
Sbjct: 160 DDVLRHPADAEGWKHFDSEYPNFAFNPRNGGVQRSIRHVLY 200

The following BLAST results are available for this feature:

BLAST of Lcy04g005710 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g005710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6Q8	2.9e-13	40.31	uncharacterized protein LOC111017452 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5D3DTF0	6.5e-05	23.96	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Lcy04g005710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148890.1	6.0e-13	40.31	uncharacterized protein LOC111017452 [Momordica charantia] >XP_022148891.1 uncha...	[more]
KAA0051834.1	1.3e-04	56.10	uncharacterized protein E6C27_scaffold60G002600 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0062362.1	1.3e-04	23.96	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26615.1 CACTA en-...	[more]
KAA0065615.1	3.0e-04	51.16	wall-associated receptor kinase-like 10 [Cucumis melo var. makuwa]	[more]
KAA0066710.1	3.0e-04	56.10	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy04g005710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..162
IPR004242	Transposon, En/Spm-like	PFAM	PF02992	Transposase_21	coord: 4..32 e-value: 1.5E-7 score: 30.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g005710.1	Lcy04g005710.1	mRNA