Lcy04g005620 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g005620
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 34272688 .. 34272918 (-)
RNA-Seq ExpressionLcy04g005620
SyntenyLcy04g005620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGAATGGCTTAAAATCGTTCATGCAACCTTCGAGAACTCTTTGAATTTGGAAGTCGAGTCTGATTCCATCGAGCTTGTCCGTTGTTTGAACAAAGAAGACGACGATCTATCAGAAATCAAGATCACAGTCGAAGCCATCAACAGAATGGCACCAAATCTTGGAGTGCTTACTTTCAAGCACTGCCATAGATCTCAAAATGGGGGTGGCTCACTCCATCACTCGTGA

mRNA sequence

ATGTGGGAATGGCTTAAAATCGTTCATGCAACCTTCGAGAACTCTTTGAATTTGGAAGTCGAGTCTGATTCCATCGAGCTTGTCCGTTGTTTGAACAAAGAAGACGACGATCTATCAGAAATCAAGATCACAGTCGAAGCCATCAACAGAATGGCACCAAATCTTGGAGTGCTTACTTTCAAGCACTGCCATAGATCTCAAAATGGGGGTGGCTCACTCCATCACTCGTGA

Coding sequence (CDS)

ATGTGGGAATGGCTTAAAATCGTTCATGCAACCTTCGAGAACTCTTTGAATTTGGAAGTCGAGTCTGATTCCATCGAGCTTGTCCGTTGTTTGAACAAAGAAGACGACGATCTATCAGAAATCAAGATCACAGTCGAAGCCATCAACAGAATGGCACCAAATCTTGGAGTGCTTACTTTCAAGCACTGCCATAGATCTCAAAATGGGGGTGGCTCACTCCATCACTCGTGA

Protein sequence

MWEWLKIVHATFENSLNLEVESDSIELVRCLNKEDDDLSEIKITVEAINRMAPNLGVLTFKHCHRSQNGGGSLHHS
Homology
The following BLAST results are available for this feature:
BLAST of Lcy04g005620 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g005620 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g005620 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g005620 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 17..68
e-value: 4.2E-6
score: 26.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g005620.1Lcy04g005620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity