Lcy04g005510 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCGTTAATGCATAGTCTAAATAGTGATGTTCTCATTTGGCATTTTGAAAAGAATGAGATTTTTTCTGTCAAAAGTGGTTATCGGCTTGCACAAAATTTGTCACTTCAGGGCTGTCCTTCTACTTTAGATACTGGTCAGTGGAAGGCACGGTGGGTGGGAGTATGGAAAGTGCAAATTCCCAGCAAAATCAGGTTCTTCCTATGGAGATTGTCTCACAATCGCTTGCCTACAAAGGATAATATGCTAAAACGAGGTATTGATGTGCCCAGTTTATGTGTTTTATGTAATTCATTTCCGGAAGACTGTCTCCATGTTTTCTGGTGTTGTCCGGTAGTCAAGTGTATATGGCAAAGTTCCAAATTTTCGGACTTATATTATTCCTTATTTGGAGGTAGTTTTGATGAAATGTTATGGGCTGTAAAGAATAATGTGGTTTTGCTGGATTTTGAACTCATTGTTGTGTTTTGGTGGGCCATCTGGAATTTGAGAAACTCTATAATATGGATGGTGCTTCAAAGTCTCGGGATTTGTGGCAATGGGCTTCAGATTACTTAG ATGCCGTTAATGCATAGTCTAAATAGTGATGTTCTCATTTGGCATTTTGAAAAGAATGAGATTTTTTCTGTCAAAAGTGGTTATCGGCTTGCACAAAATTTGTCACTTCAGGGCTGTCCTTCTACTTTAGATACTGGTCAGTGGAAGGCACGGTGGGTGGGAGTATGGAAAGTGCAAATTCCCAGCAAAATCAGGTTCTTCCTATGGAGATTGTCTCACAATCGCTTGCCTACAAAGGATAATATGCTAAAACGAGGTATTGATGTGCCCAGTTTATGTGTTTTATGTAATTCATTTCCGGAAGACTGTCTCCATGTTTTCTGGTGTTGTCCGGTAGTCAAGTGTATATGGCAAAGTTCCAAATTTTCGGACTTATATTATTCCTTATTTGGAGGTAGTTTTGATGAAATGTTATGGGCTGTAAAGAATAATGTGGTTTTGCTGGATTTTGAACTCATTGTTGTGTTTTGGTGGGCCATCTGGAATTTGAGAAACTCTATAATATGGATGGTGCTTCAAAGTCTCGGGATTTGTGGCAATGGGCTTCAGATTACTTAG ATGCCGTTAATGCATAGTCTAAATAGTGATGTTCTCATTTGGCATTTTGAAAAGAATGAGATTTTTTCTGTCAAAAGTGGTTATCGGCTTGCACAAAATTTGTCACTTCAGGGCTGTCCTTCTACTTTAGATACTGGTCAGTGGAAGGCACGGTGGGTGGGAGTATGGAAAGTGCAAATTCCCAGCAAAATCAGGTTCTTCCTATGGAGATTGTCTCACAATCGCTTGCCTACAAAGGATAATATGCTAAAACGAGGTATTGATGTGCCCAGTTTATGTGTTTTATGTAATTCATTTCCGGAAGACTGTCTCCATGTTTTCTGGTGTTGTCCGGTAGTCAAGTGTATATGGCAAAGTTCCAAATTTTCGGACTTATATTATTCCTTATTTGGAGGTAGTTTTGATGAAATGTTATGGGCTGTAAAGAATAATGTGGTTTTGCTGGATTTTGAACTCATTGTTGTGTTTTGGTGGGCCATCTGGAATTTGAGAAACTCTATAATATGGATGGTGCTTCAAAGTCTCGGGATTTGTGGCAATGGGCTTCAGATTACTTAG MPLMHSLNSDVLIWHFEKNEIFSVKSGYRLAQNLSLQGCPSTLDTGQWKARWVGVWKVQIPSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSSKFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNSIIWMVLQSLGICGNGLQIT Homology
BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25 Identity = 61/167 (36.53%), Postives = 94/167 (56.29%), Query Frame = 0
BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A6J1CNZ5 (uncharacterized protein LOC111013220 OS=Momordica charantia OX=3673 GN=LOC111013220 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25 Identity = 70/170 (41.18%), Postives = 94/170 (55.29%), Query Frame = 0
BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A2N9FH97 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14357 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24 Identity = 58/167 (34.73%), Postives = 85/167 (50.90%), Query Frame = 0
BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A2N9IT87 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55245 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23 Identity = 57/169 (33.73%), Postives = 93/169 (55.03%), Query Frame = 0
BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A2N9GC56 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24870 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23 Identity = 57/169 (33.73%), Postives = 93/169 (55.03%), Query Frame = 0
BLAST of Lcy04g005510 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia]) HSP 1 Score: 125.9 bits (315), Expect = 3.5e-25 Identity = 61/167 (36.53%), Postives = 94/167 (56.29%), Query Frame = 0
BLAST of Lcy04g005510 vs. NCBI nr
Match: XP_022143319.1 (uncharacterized protein LOC111013220 [Momordica charantia]) HSP 1 Score: 124.8 bits (312), Expect = 7.8e-25 Identity = 70/170 (41.18%), Postives = 94/170 (55.29%), Query Frame = 0
BLAST of Lcy04g005510 vs. NCBI nr
Match: XP_030505362.1 (uncharacterized protein LOC115720349 [Cannabis sativa]) HSP 1 Score: 115.9 bits (289), Expect = 3.6e-22 Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = 0
BLAST of Lcy04g005510 vs. NCBI nr
Match: XP_023916738.1 (uncharacterized protein LOC112028299 [Quercus suber]) HSP 1 Score: 114.4 bits (285), Expect = 1.1e-21 Identity = 55/166 (33.13%), Postives = 82/166 (49.40%), Query Frame = 0
BLAST of Lcy04g005510 vs. NCBI nr
Match: KAF4401820.1 (hypothetical protein G4B88_013107 [Cannabis sativa]) HSP 1 Score: 113.6 bits (283), Expect = 1.8e-21 Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 0
BLAST of Lcy04g005510 vs. TAIR 10
Match: AT1G43730.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 60.1 bits (144), Expect = 2.2e-09 Identity = 35/116 (30.17%), Postives = 59/116 (50.86%), Query Frame = 0
BLAST of Lcy04g005510 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08 Identity = 40/163 (24.54%), Postives = 72/163 (44.17%), Query Frame = 0
BLAST of Lcy04g005510 vs. TAIR 10
Match: AT5G16486.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 55.1 bits (131), Expect = 7.1e-08 Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of Lcy04g005510 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07 Identity = 29/119 (24.37%), Postives = 54/119 (45.38%), Query Frame = 0
BLAST of Lcy04g005510 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers ) HSP 1 Score: 51.6 bits (122), Expect = 7.8e-07 Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
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