Lcy04g005510 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g005510
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr04: 34020765 .. 34021322 (-)
RNA-Seq ExpressionLcy04g005510
SyntenyLcy04g005510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTAATGCATAGTCTAAATAGTGATGTTCTCATTTGGCATTTTGAAAAGAATGAGATTTTTTCTGTCAAAAGTGGTTATCGGCTTGCACAAAATTTGTCACTTCAGGGCTGTCCTTCTACTTTAGATACTGGTCAGTGGAAGGCACGGTGGGTGGGAGTATGGAAAGTGCAAATTCCCAGCAAAATCAGGTTCTTCCTATGGAGATTGTCTCACAATCGCTTGCCTACAAAGGATAATATGCTAAAACGAGGTATTGATGTGCCCAGTTTATGTGTTTTATGTAATTCATTTCCGGAAGACTGTCTCCATGTTTTCTGGTGTTGTCCGGTAGTCAAGTGTATATGGCAAAGTTCCAAATTTTCGGACTTATATTATTCCTTATTTGGAGGTAGTTTTGATGAAATGTTATGGGCTGTAAAGAATAATGTGGTTTTGCTGGATTTTGAACTCATTGTTGTGTTTTGGTGGGCCATCTGGAATTTGAGAAACTCTATAATATGGATGGTGCTTCAAAGTCTCGGGATTTGTGGCAATGGGCTTCAGATTACTTAG

mRNA sequence

ATGCCGTTAATGCATAGTCTAAATAGTGATGTTCTCATTTGGCATTTTGAAAAGAATGAGATTTTTTCTGTCAAAAGTGGTTATCGGCTTGCACAAAATTTGTCACTTCAGGGCTGTCCTTCTACTTTAGATACTGGTCAGTGGAAGGCACGGTGGGTGGGAGTATGGAAAGTGCAAATTCCCAGCAAAATCAGGTTCTTCCTATGGAGATTGTCTCACAATCGCTTGCCTACAAAGGATAATATGCTAAAACGAGGTATTGATGTGCCCAGTTTATGTGTTTTATGTAATTCATTTCCGGAAGACTGTCTCCATGTTTTCTGGTGTTGTCCGGTAGTCAAGTGTATATGGCAAAGTTCCAAATTTTCGGACTTATATTATTCCTTATTTGGAGGTAGTTTTGATGAAATGTTATGGGCTGTAAAGAATAATGTGGTTTTGCTGGATTTTGAACTCATTGTTGTGTTTTGGTGGGCCATCTGGAATTTGAGAAACTCTATAATATGGATGGTGCTTCAAAGTCTCGGGATTTGTGGCAATGGGCTTCAGATTACTTAG

Coding sequence (CDS)

ATGCCGTTAATGCATAGTCTAAATAGTGATGTTCTCATTTGGCATTTTGAAAAGAATGAGATTTTTTCTGTCAAAAGTGGTTATCGGCTTGCACAAAATTTGTCACTTCAGGGCTGTCCTTCTACTTTAGATACTGGTCAGTGGAAGGCACGGTGGGTGGGAGTATGGAAAGTGCAAATTCCCAGCAAAATCAGGTTCTTCCTATGGAGATTGTCTCACAATCGCTTGCCTACAAAGGATAATATGCTAAAACGAGGTATTGATGTGCCCAGTTTATGTGTTTTATGTAATTCATTTCCGGAAGACTGTCTCCATGTTTTCTGGTGTTGTCCGGTAGTCAAGTGTATATGGCAAAGTTCCAAATTTTCGGACTTATATTATTCCTTATTTGGAGGTAGTTTTGATGAAATGTTATGGGCTGTAAAGAATAATGTGGTTTTGCTGGATTTTGAACTCATTGTTGTGTTTTGGTGGGCCATCTGGAATTTGAGAAACTCTATAATATGGATGGTGCTTCAAAGTCTCGGGATTTGTGGCAATGGGCTTCAGATTACTTAG

Protein sequence

MPLMHSLNSDVLIWHFEKNEIFSVKSGYRLAQNLSLQGCPSTLDTGQWKARWVGVWKVQIPSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSSKFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNSIIWMVLQSLGICGNGLQIT
Homology
BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 61/167 (36.53%), Postives = 94/167 (56.29%), Query Frame = 0

Query: 1   MPLMHSLNSDVLIWHFEKNEIFSVKSGYRLA-QNLSLQGCPSTLDTGQWKARWVGVWKVQ 60
           +P+      D LIW++EK  ++SV+SGY++A  N      PS+  + + +  W G WK+ 
Sbjct: 784 IPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCVQAPSSSSSEEVRCWWNGFWKMH 843

Query: 61  IPSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQS 120
           IP+KI+ FLWRL  +RLPT  N+ KRG+++ + C  C    ED +H+FW C   + +W +
Sbjct: 844 IPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFWICKFAEALWIN 903

Query: 121 SKFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNS 167
           SKF  L   L       +L     ++   DFE + V  W +WN RN+
Sbjct: 904 SKFGKLSPFL-------ILRESHESLSKADFEELCVVIWGLWNQRNA 943

BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A6J1CNZ5 (uncharacterized protein LOC111013220 OS=Momordica charantia OX=3673 GN=LOC111013220 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25
Identity = 70/170 (41.18%), Postives = 94/170 (55.29%), Query Frame = 0

Query: 1   MPLMHSLNSDVLIWHFEKNEIFSVKSGYRLAQNLSLQGCPSTLDTGQWKARWVGVWKVQI 60
           +PL   L +D LIW+FEKN I +VKS Y+LA   S     ST  +      W  VW++ +
Sbjct: 13  IPLGIGLAADRLIWNFEKNGICTVKSDYKLAHMQSPDTSASTSLSECLAKWWKDVWQLNL 72

Query: 61  PSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSS 120
           PSKI+ F WR   +RLPT  N++ RG+DVP     C    ED LH+FW C V K   Q S
Sbjct: 73  PSKIKVFFWRPCLDRLPTGANLILRGVDVPDCYAFCGKKGEDALHLFWTCKVSKNQRQVS 132

Query: 121 KFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNSIIWM 171
           KFS L   +   S   +L   +  +   DFE +VVF W IW+ RN  +++
Sbjct: 133 KFSHLPQDVRPLSLLHLLRDCEGILSWSDFEELVVFLWGIWSKRNVKVFL 182

BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A2N9FH97 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14357 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 58/167 (34.73%), Postives = 85/167 (50.90%), Query Frame = 0

Query: 1   MPLMHSLNSDVLIWHFEKNEIFSVKSGYRLAQNLSLQGCPSTLDTGQWKARWVGVWKVQI 60
           +PL H    D+LIW   KN  F+V+SGY L  N S +  P   DT      W  +W +Q+
Sbjct: 155 IPLSHYRQDDILIWGGTKNGDFAVRSGYHLLLNDSHRADPGPSDTSLLVKAWNTIWSIQV 214

Query: 61  PSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSS 120
           P K+R FLWR SH  LPT+ N+  R +    +C  CNS  E  +H+ W C + + +WQS 
Sbjct: 215 PPKVRHFLWRASHESLPTRQNLHYRHVIDDPICPSCNSKTETTIHIIWLCSISQHVWQSV 274

Query: 121 KFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNSI 168
            +S          F E+L      + L + +L  +  W++W  RN +
Sbjct: 275 PWSQKLTRDTYSDFQELLLNCVQTLSLSELQLFAMVSWSLWYHRNCV 321

BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A2N9IT87 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55245 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 57/169 (33.73%), Postives = 93/169 (55.03%), Query Frame = 0

Query: 2    PLMHSLNSDVLIWHFEKNEIFSVKSGYRLA-QNLSLQGCPSTLDTGQWKARWVGVWKVQI 61
            PL+ SL  D LIW    +  FSVKS Y  A   + +QG P + ++ + +  W  VW +++
Sbjct: 1005 PLLPSLPKDALIWWGTPSGNFSVKSAYHTAFLKVQIQGNPESSNSKELQLFWKAVWALKL 1064

Query: 62   PSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSS 121
            P KI+ F+WRLS N LPT+DN++KR I  P  C +C +  E   H+F  C   + +W+  
Sbjct: 1065 PRKIQSFVWRLSRNILPTRDNLVKRNISSPMECPICGAASETTKHIFGQCIYARKVWEGK 1124

Query: 122  KFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNSIIW 170
              +   Y+ +G    +  W V      +  +++ V  W++WN+RNS ++
Sbjct: 1125 DLAIELYNDWGDEMFDTFWNVWKFKGEMALKIVAVVSWSLWNVRNSAVF 1173

BLAST of Lcy04g005510 vs. ExPASy TrEMBL
Match: A0A2N9GC56 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24870 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 57/169 (33.73%), Postives = 93/169 (55.03%), Query Frame = 0

Query: 2    PLMHSLNSDVLIWHFEKNEIFSVKSGYRLA-QNLSLQGCPSTLDTGQWKARWVGVWKVQI 61
            PL+ SL  D LIW    +  FSVKS Y  A   + +QG P + ++ + +  W  VW +++
Sbjct: 1278 PLLPSLPKDALIWWGTPSGNFSVKSAYHTAFLKVQIQGNPESSNSKELQLFWKAVWALKL 1337

Query: 62   PSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSS 121
            P KI+ F+WRLS N LPT+DN++KR I  P  C +C +  E   H+F  C   + +W+  
Sbjct: 1338 PRKIQSFVWRLSRNILPTRDNLVKRNISSPMECPICGAASETTKHIFGQCIYARKVWEGK 1397

Query: 122  KFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNSIIW 170
              +   Y+ +G    +  W V      +  +++ V  W++WN+RNS ++
Sbjct: 1398 DLAIELYNDWGDEMVDTFWNVWKFKGEMALKIVAVVSWSLWNVRNSAVF 1446

BLAST of Lcy04g005510 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-25
Identity = 61/167 (36.53%), Postives = 94/167 (56.29%), Query Frame = 0

Query: 1   MPLMHSLNSDVLIWHFEKNEIFSVKSGYRLA-QNLSLQGCPSTLDTGQWKARWVGVWKVQ 60
           +P+      D LIW++EK  ++SV+SGY++A  N      PS+  + + +  W G WK+ 
Sbjct: 784 IPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCVQAPSSSSSEEVRCWWNGFWKMH 843

Query: 61  IPSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQS 120
           IP+KI+ FLWRL  +RLPT  N+ KRG+++ + C  C    ED +H+FW C   + +W +
Sbjct: 844 IPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFWICKFAEALWIN 903

Query: 121 SKFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNS 167
           SKF  L   L       +L     ++   DFE + V  W +WN RN+
Sbjct: 904 SKFGKLSPFL-------ILRESHESLSKADFEELCVVIWGLWNQRNA 943

BLAST of Lcy04g005510 vs. NCBI nr
Match: XP_022143319.1 (uncharacterized protein LOC111013220 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 7.8e-25
Identity = 70/170 (41.18%), Postives = 94/170 (55.29%), Query Frame = 0

Query: 1   MPLMHSLNSDVLIWHFEKNEIFSVKSGYRLAQNLSLQGCPSTLDTGQWKARWVGVWKVQI 60
           +PL   L +D LIW+FEKN I +VKS Y+LA   S     ST  +      W  VW++ +
Sbjct: 13  IPLGIGLAADRLIWNFEKNGICTVKSDYKLAHMQSPDTSASTSLSECLAKWWKDVWQLNL 72

Query: 61  PSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSS 120
           PSKI+ F WR   +RLPT  N++ RG+DVP     C    ED LH+FW C V K   Q S
Sbjct: 73  PSKIKVFFWRPCLDRLPTGANLILRGVDVPDCYAFCGKKGEDALHLFWTCKVSKNQRQVS 132

Query: 121 KFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNSIIWM 171
           KFS L   +   S   +L   +  +   DFE +VVF W IW+ RN  +++
Sbjct: 133 KFSHLPQDVRPLSLLHLLRDCEGILSWSDFEELVVFLWGIWSKRNVKVFL 182

BLAST of Lcy04g005510 vs. NCBI nr
Match: XP_030505362.1 (uncharacterized protein LOC115720349 [Cannabis sativa])

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-22
Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = 0

Query: 10  DVLIWHFEKNEIFSVKSGYRLAQNLSLQGCPSTL-DTGQWKARWVGVWKVQIPSKIRFFL 69
           DVL W       + VKSGYR+A+ L++  CP+   +  Q KA W   W +Q+P +I+ F 
Sbjct: 579 DVLTWPLSSKGHYLVKSGYRVARELNV--CPTRCSNMDQIKAWWKMWWHLQLPPRIKLFG 638

Query: 70  WRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSSKFSDLYYS 129
           W+L HN LP K N++ RG+ +  +C LC ++ E   H  W C   K +W+   +      
Sbjct: 639 WKLCHNWLPAKSNLIHRGMQIDPVCHLCGTYVESLPHAIWSCAKAKEVWKLLPYYSRICK 698

Query: 130 LFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNSI 168
             GGS  + L  +K+++ + +FE ++   WAIW  RN +
Sbjct: 699 YKGGSMFDFLVEIKHHLSIDEFEEVIKISWAIWENRNRL 735

BLAST of Lcy04g005510 vs. NCBI nr
Match: XP_023916738.1 (uncharacterized protein LOC112028299 [Quercus suber])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-21
Identity = 55/166 (33.13%), Postives = 82/166 (49.40%), Query Frame = 0

Query: 1    MPLMHSLNSDVLIWHFEKNEIFSVKSGYRLAQNLSLQGCPSTLDTGQWKARWVGVWKVQI 60
            +PL    ++DV +W   KN I+S KS YRL    +    P   ++   +  W  +W++ I
Sbjct: 949  IPLSSRQSADVRVWSESKNGIYSTKSEYRLLAKTATNNQPGPSNSSAHRELWTNIWRLNI 1008

Query: 61   PSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSS 120
            P+KI+ FLWR S   LPTK N+  R I     C  C  +PED +H  W C +VK IW   
Sbjct: 1009 PNKIKHFLWRASSESLPTKKNLCHRKIITNDTCDFCRDYPEDGIHALWDCYMVKEIWWKE 1068

Query: 121  KFSDLYYSLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRNS 167
            +    + S    +F ++   + N +     E   +  W+IW  RNS
Sbjct: 1069 ELCRPHISEKFVNFQDLFLGILNKLDNQLAERFAIIAWSIWFKRNS 1114

BLAST of Lcy04g005510 vs. NCBI nr
Match: KAF4401820.1 (hypothetical protein G4B88_013107 [Cannabis sativa])

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-21
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 0

Query: 10  DVLIWHFEKNEIFSVKSGYRLAQ--NLSLQGCPSTLDTGQWKARWVGVWKVQIPSKIRFF 69
           D L W F  N  + VKSGYR+ +  NL+   C +  D  +W   W  +W + +P +++ F
Sbjct: 27  DTLFWPFTPNGQYIVKSGYRVGREMNLNPTRCSNMTDIQKW---WKMIWSLHLPPRMKLF 86

Query: 70  LWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSSKFSDLYY 129
            WR+ HN LP K N+  RG++V + C LC  + E   H  W C  VKCIW+   +     
Sbjct: 87  GWRVCHNWLPAKMNLKHRGMEVNTRCELCTRYDETLTHALWSCDKVKCIWKLLPWYKQAS 146

Query: 130 SLFGGSFDEMLWAVKNNVVLLDFELIVVFWWAIWNLRN 166
            L  GS  ++L +++  +   DFE  +   WAIW  RN
Sbjct: 147 KLGEGSMFDILKSLEQIINKQDFEDTIKILWAIWENRN 181

BLAST of Lcy04g005510 vs. TAIR 10
Match: AT1G43730.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-09
Identity = 35/116 (30.17%), Postives = 59/116 (50.86%), Query Frame = 0

Query: 3   LMHSLNSDVLIWHFEKNEIFSVKSGYRLAQNLSLQGCPSTLDTGQWKARWVGVWKVQIPS 62
           L+   + D  IW   K ++ +  + +  A+  SL   P       +KA W   +K  +P 
Sbjct: 111 LIDCQHDDSFIW---KTDLHAPSNIFSTAKT-SLALHPQNHIVPWYKAVW---FKNHVP- 170

Query: 63  KIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQ 119
           K  F  W ++ NRL T+D +   G+ +P++C+LCNS  E   H+F+ CP    +W+
Sbjct: 171 KHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVWR 218

BLAST of Lcy04g005510 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08
Identity = 40/163 (24.54%), Postives = 72/163 (44.17%), Query Frame = 0

Query: 24  VKSGYRLA------QNLSLQGCPSTLDTGQWKARWVGVWKVQIPSKIRFFLWRLSHNRLP 83
           ++SGY +A      +  ++Q  P + +  Q       +WK+ +  KI+ FLWR     L 
Sbjct: 6   LRSGYWVATHEDLLEEEAIQPPPGSTEVKQ------AIWKLHVAPKIKHFLWRCVTGALA 65

Query: 84  TKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIWQSSKFSDLYYSLFG--GSFD 143
           T   +  R ID   +C  C    E   H+ + CP  + +W+S+    +  + +G   SF+
Sbjct: 66  TNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANI--IIGNQWGPPSSFE 125

Query: 144 EMLWAVKNNVVLL-------DFELIVVFW--WAIWNLRNSIIW 170
           + L    N ++ L         +  + FW  W +W  RN  ++
Sbjct: 126 DNL----NRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLF 156

BLAST of Lcy04g005510 vs. TAIR 10
Match: AT5G16486.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-08
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 49  KARWVGVWKVQIPSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFW 108
           KA W   +K +IP K  F  W    +RLPT+D +L  G+ VPSLC+LCN+F E   H+F+
Sbjct: 146 KAIW---FKGRIP-KHAFISWVNIRHRLPTRDKLLSWGLHVPSLCLLCNAFDETRQHLFF 203

Query: 109 CC 111
            C
Sbjct: 206 DC 203

BLAST of Lcy04g005510 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07
Identity = 29/119 (24.37%), Postives = 54/119 (45.38%), Query Frame = 0

Query: 55  VWKVQIPSKIRFFLWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVK 114
           +WK++   KI+ FLW+L    L T DN+ +R I     C  C    E   H+F+ C   +
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 115 CIWQSSKFSDLYYSLFGGSFDEMLWAVKNNVVLLD----FELIVVFWWAIWNLRNSIIW 170
            +W++S          G + +  +  + ++ +       F L +   W +W  RN +++
Sbjct: 78  QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVF 136

BLAST of Lcy04g005510 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 51.6 bits (122), Expect = 7.8e-07
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 0

Query: 68  LWRLSHNRLPTKDNMLKRGIDVPSLCVLCNSFPEDCLHVFWCCPVVKCIW 118
           L RL+ NRL   D  +  GI VPSLC+LCN+  E   HVF+ CP    +W
Sbjct: 259 LERLTRNRLHICDRFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVW 308

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DAR41.7e-2536.53uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1CNZ53.8e-2541.18uncharacterized protein LOC111013220 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A2N9FH971.4e-2434.73Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14357 PE=4 SV=1[more]
A0A2N9IT871.6e-2333.73Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55245 PE=4 SV=1[more]
A0A2N9GC561.6e-2333.73Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
XP_022150918.13.5e-2536.53uncharacterized protein LOC111018954 [Momordica charantia][more]
XP_022143319.17.8e-2541.18uncharacterized protein LOC111013220 [Momordica charantia][more]
XP_030505362.13.6e-2234.59uncharacterized protein LOC115720349 [Cannabis sativa][more]
XP_023916738.11.1e-2133.13uncharacterized protein LOC112028299 [Quercus suber][more]
KAF4401820.11.8e-2135.44hypothetical protein G4B88_013107 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT1G43730.12.2e-0930.17RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT2G02650.11.4e-0824.54Ribonuclease H-like superfamily protein [more]
AT5G16486.17.1e-0846.77RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT3G25270.16.0e-0724.37Ribonuclease H-like superfamily protein [more]
AT1G45063.17.8e-0748.00copper ion binding;electron carriers [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 22..117
e-value: 9.5E-21
score: 74.3
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 8..169
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 8..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g005510.1Lcy04g005510.1mRNA