Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCATTGGAATTTTGCGAGACTGTGAGGGAGCAACCTTTTATCAGTGTGTTGAAACTACAATCAGAGATAAAAGAAAATTTTGGATACCACGTTCCTTACCACAGGGTGTGGGAAGGAAAAAGAAAAGTCTTGGTTAAAGTATTTGGTGATTGGGACGAGTCTTATAAACTTCTGCCCAAGTGGATGTATATGGTGAAACATACCAATCCTGGAACACGTGTGGAGTGGAAGATACAGAGTACACATCTTGCAGGTCATGTTATCCTTACTTTAGTGTTTTGGGCATTGTGTCCATGTATTGAGGCTTTCAAGAAATGCCGACCTATCATCCAAATAGATGGTGCTCATCTATATGGAAAATATAGAGAGAAATTACTTATTGCAACCTCATTGGACTCCAATGGCCACTTGCTTCCACTTGCATTTGCCATCGTCGATGAGGAATGCCGTGAAACATGGGGATGGTTTTTGAAACACTTGAGAGCGATCGTTTCACATAAACAGATATGTTTAATTTCTGATCGGCATGGTGGCATAATTTCAGCAGTCAACAGTATGAGTAATGAAGATGATGTGACATTGTCTGTACTTCATCACAGATTTTGCTTACGACACTTGGTCAGCAATTTCAGTAAAAAATACAAGTGTACACGATTGAAAAATCTGGTTTATCGTGGTGGGTGCCACTACCAAATTCGAAAGTACAACAAGATTATTGAAGATATTAAAATGATGAATGGCAATTGTATGAGTTTTTTCAACAATATTGGTATTGAAAAATGGACCCAAGCACACAATGGAGGCATTAGGTATGGGTGGATGACCACCAATCTAGCAGAGTGCATCAATGGAGTTCTGAAAGGAAGTCATATGTTGCCTGTCACTGCACTCGCTCAATTGACTTTCTACAGATGTGTGTAA
mRNA sequence
ATGATTGCATTGGAATTTTGCGAGACTGTGAGGGAGCAACCTTTTATCAGTGTGTTGAAACTACAATCAGAGATAAAAGAAAATTTTGGATACCACGTTCCTTACCACAGGGTGTGGGAAGGAAAAAGAAAAGTCTTGGTTAAAGTATTTGGTGATTGGGACGAGTCTTATAAACTTCTGCCCAAGTGGATGTATATGGTGAAACATACCAATCCTGGAACACGTGTGGAGTGGAAGATACAGAGTACACATCTTGCAGGTCATGTTATCCTTACTTTAGTGTTTTGGGCATTGTGTCCATGTATTGAGGCTTTCAAGAAATGCCGACCTATCATCCAAATAGATGGTGCTCATCTATATGGAAAATATAGAGAGAAATTACTTATTGCAACCTCATTGGACTCCAATGGCCACTTGCTTCCACTTGCATTTGCCATCGTCGATGAGGAATGCCGTGAAACATGGGGATGGTTTTTGAAACACTTGAGAGCGATCGTTTCACATAAACAGATATGTTTAATTTCTGATCGGCATGGTGGCATAATTTCAGCAGTCAACAGTATGAGTAATGAAGATGATGTGACATTGTCTGTACTTCATCACAGATTTTGCTTACGACACTTGGTCAGCAATTTCAGTAAAAAATACAAGTGTACACGATTGAAAAATCTGGTTTATCGTGGTGGGTGCCACTACCAAATTCGAAAGTACAACAAGATTATTGAAGATATTAAAATGATGAATGGCAATTGTATGAGTTTTTTCAACAATATTGGTATTGAAAAATGGACCCAAGCACACAATGGAGGCATTAGGTATGGGTGGATGACCACCAATCTAGCAGAGTGCATCAATGGAGTTCTGAAAGGAAGTCATATGTTGCCTGTCACTGCACTCGCTCAATTGACTTTCTACAGATGTGTGTAA
Coding sequence (CDS)
ATGATTGCATTGGAATTTTGCGAGACTGTGAGGGAGCAACCTTTTATCAGTGTGTTGAAACTACAATCAGAGATAAAAGAAAATTTTGGATACCACGTTCCTTACCACAGGGTGTGGGAAGGAAAAAGAAAAGTCTTGGTTAAAGTATTTGGTGATTGGGACGAGTCTTATAAACTTCTGCCCAAGTGGATGTATATGGTGAAACATACCAATCCTGGAACACGTGTGGAGTGGAAGATACAGAGTACACATCTTGCAGGTCATGTTATCCTTACTTTAGTGTTTTGGGCATTGTGTCCATGTATTGAGGCTTTCAAGAAATGCCGACCTATCATCCAAATAGATGGTGCTCATCTATATGGAAAATATAGAGAGAAATTACTTATTGCAACCTCATTGGACTCCAATGGCCACTTGCTTCCACTTGCATTTGCCATCGTCGATGAGGAATGCCGTGAAACATGGGGATGGTTTTTGAAACACTTGAGAGCGATCGTTTCACATAAACAGATATGTTTAATTTCTGATCGGCATGGTGGCATAATTTCAGCAGTCAACAGTATGAGTAATGAAGATGATGTGACATTGTCTGTACTTCATCACAGATTTTGCTTACGACACTTGGTCAGCAATTTCAGTAAAAAATACAAGTGTACACGATTGAAAAATCTGGTTTATCGTGGTGGGTGCCACTACCAAATTCGAAAGTACAACAAGATTATTGAAGATATTAAAATGATGAATGGCAATTGTATGAGTTTTTTCAACAATATTGGTATTGAAAAATGGACCCAAGCACACAATGGAGGCATTAGGTATGGGTGGATGACCACCAATCTAGCAGAGTGCATCAATGGAGTTCTGAAAGGAAGTCATATGTTGCCTGTCACTGCACTCGCTCAATTGACTTTCTACAGATGTGTGTAA
Protein sequence
MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLPKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLYGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGGIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTALAQLTFYRCV
Homology
BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match:
A0A6J1DJ59 (uncharacterized protein LOC111021011 OS=Momordica charantia OX=3673 GN=LOC111021011 PE=4 SV=1)
HSP 1 Score: 374.0 bits (959), Expect = 6.0e-100
Identity = 172/269 (63.94%), Postives = 209/269 (77.70%), Query Frame = 0
Query: 1 MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
MI+ EFC+ VR P S+ L+ IKE FGYHVPY RVWEGK K L ++FGDWDESY+LL
Sbjct: 1 MISREFCDAVRANPSTSIAILRDLIKEKFGYHVPYRRVWEGKTKALARIFGDWDESYQLL 60
Query: 61 PKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 120
PKWMYM+KHTNPGT VEWKI++ GH IL VFW+ PCI A +K ++QIDG HLY
Sbjct: 61 PKWMYMLKHTNPGTIVEWKIRNYGQPGHDILHSVFWSFGPCIAASQKFCLVLQIDGTHLY 120
Query: 121 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGG 180
KY+ LLI TS+DSNGHLLPL FAI+DEE R+TWGWFLK+LR +V+H++ICLISDRHGG
Sbjct: 121 EKYKGNLLIVTSVDSNGHLLPLVFAIIDEESRQTWGWFLKNLRKVVTHEEICLISDRHGG 180
Query: 181 IISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKI 240
IIS VN+ N T HHRFCLRH+ SNF+ KYKCT LK+ VYR G +QIRKYN+
Sbjct: 181 IISTVNNSDN--GWTRPKSHHRFCLRHVSSNFNHKYKCTELKDSVYRAGAQFQIRKYNE- 240
Query: 241 IEDIKMMNGNCMSFFNNIGIEKWTQAHNG 270
+E+IK++N +CM+FF NIGIEKWT +H+G
Sbjct: 241 VENIKLLNSSCMNFFRNIGIEKWTLSHDG 266
BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match:
A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)
HSP 1 Score: 366.3 bits (939), Expect = 1.2e-97
Identity = 175/308 (56.82%), Postives = 213/308 (69.16%), Query Frame = 0
Query: 1 MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
M+A EF E VRE+P ISV LQS IKE FGYHV Y R W+GK+K + KVFGDWDESYKLL
Sbjct: 153 MLAREFFEFVREKPSISVKSLQSMIKEKFGYHVSYRRAWDGKKKAVAKVFGDWDESYKLL 212
Query: 61 PKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 120
P+W+YMVKHTNPGT VE ++Q+T + GHVIL+ VFWA PCIEAF +CRP+IQID HLY
Sbjct: 213 PRWLYMVKHTNPGTLVELRVQATPIEGHVILSSVFWAFGPCIEAFSRCRPLIQIDCTHLY 272
Query: 121 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGG 180
GKYR KLLIATS+DSNGHLLPLAFA+V+EE ++WGWFL+HL+ IV+H +ICL+S RH G
Sbjct: 273 GKYRGKLLIATSIDSNGHLLPLAFAVVEEESADSWGWFLRHLKQIVTHDEICLLSYRHAG 332
Query: 181 IISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKI 240
IISAVN+ N T + HHRFCLRH+V
Sbjct: 333 IISAVNNPDNR--WTGANCHHRFCLRHVV------------------------------- 392
Query: 241 IEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTALA 300
+KWT+AH+GG RYGWMTTNL+EC+NGV KG+ ML + A+A
Sbjct: 393 --------------------KKWTRAHDGGFRYGWMTTNLSECMNGVFKGAQMLSINAIA 407
Query: 301 QLTFYRCV 309
Q+TF++CV
Sbjct: 453 QITFFKCV 407
BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match:
A0A438EWG2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 PE=4 SV=1)
HSP 1 Score: 355.5 bits (911), Expect = 2.2e-94
Identity = 168/309 (54.37%), Postives = 216/309 (69.90%), Query Frame = 0
Query: 2 IALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLP 61
IA E V+ IS+ L +K+ FGY+V Y R+WE KRK ++++FGDWDESY+ LP
Sbjct: 290 IAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYKRIWEAKRKAMIRIFGDWDESYQTLP 349
Query: 62 KWMYMVKHTNPGTRVEWKIQ-STHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 121
+WM +VK TNPGT+V WK G+V VFWA C+E FK CRPIIQIDG LY
Sbjct: 350 RWMNIVKLTNPGTKVVWKTSLLAGCNGNVRFMRVFWAFGACVEGFKHCRPIIQIDGTFLY 409
Query: 122 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRHG 181
GKY KLLIATS+D+NGH+ PLAFAIV+EE ++W WFL LR V+ ++ ICLISDRH
Sbjct: 410 GKYIGKLLIATSIDANGHIFPLAFAIVEEESSDSWSWFLYILRTQVTQREGICLISDRHA 469
Query: 182 GIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNK 241
GI +A+ S + HHR+CLRH+ SNF+ KY+ LK+LVYR G +Q RKY
Sbjct: 470 GIQAAIRDPS--VGWSPPYAHHRYCLRHVASNFNDKYRNKMLKDLVYRAGSQHQPRKYEA 529
Query: 242 IIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTAL 301
+ ++K ++ C+ +F + +KWT AH+GG RYGWMTTN+AECINGVLKG+ MLP+TAL
Sbjct: 530 CMTELKRLDDKCLEWFKRLDTKKWTLAHDGGHRYGWMTTNIAECINGVLKGARMLPITAL 589
Query: 302 AQLTFYRCV 309
+LTFYRCV
Sbjct: 590 VRLTFYRCV 596
BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match:
A5BJW1 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 PE=4 SV=1)
HSP 1 Score: 352.1 bits (902), Expect = 2.4e-93
Identity = 171/312 (54.81%), Postives = 222/312 (71.15%), Query Frame = 0
Query: 1 MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
+IA E V+ S+ L +K+ FGY V Y R+WE KRK +++VFGDWDESY+ L
Sbjct: 190 LIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESYQAL 249
Query: 61 PKWMYMVKHTNPGTRVEWK-IQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHL 120
PKWM +++ TNPGT+V WK I ++G+V VFWA +E FK CRPIIQIDG L
Sbjct: 250 PKWMNILQLTNPGTKVVWKTIPLGGISGNVRFMRVFWAFGASVEGFKHCRPIIQIDGTFL 309
Query: 121 YGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRH 180
YGKY KLLIATS+D NGH+ PLAFAIV+EE +++W WFL LR V+ ++ ICLISDRH
Sbjct: 310 YGKYMGKLLIATSIDGNGHVFPLAFAIVEEESQDSWSWFLIALRHHVTQREGICLISDRH 369
Query: 181 GGIISAVNSMSNEDDVTLSVLH--HRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRK 240
GI +AV + S V S H HR+CLRH+VSNF+ K+K LK L YR GC +Q RK
Sbjct: 370 AGINAAVRNPS----VGWSPPHAQHRYCLRHVVSNFNDKFKNKVLKELAYRAGCQHQPRK 429
Query: 241 YNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPV 300
Y + +E++K ++ +++F+ + +KWTQA++ G RYGWMTTN+AECINGVLKG+ MLP+
Sbjct: 430 YERYMEELKRLDEKSVAWFSKLDTQKWTQAYDLGYRYGWMTTNIAECINGVLKGARMLPI 489
Query: 301 TALAQLTFYRCV 309
TAL QLTFYRCV
Sbjct: 490 TALVQLTFYRCV 497
BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match:
A0A438HFK5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 PE=4 SV=1)
HSP 1 Score: 352.1 bits (902), Expect = 2.4e-93
Identity = 171/312 (54.81%), Postives = 222/312 (71.15%), Query Frame = 0
Query: 1 MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
+IA E V+ S+ L +K+ FGY V Y R+WE KRK +++VFGDWDESY+ L
Sbjct: 344 LIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESYQAL 403
Query: 61 PKWMYMVKHTNPGTRVEWK-IQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHL 120
PKWM +++ TNPGT+V WK I ++G+V VFWA +E FK CRPIIQIDG L
Sbjct: 404 PKWMNILQLTNPGTKVVWKTIPLGGISGNVRFMRVFWAFGASVEGFKHCRPIIQIDGTFL 463
Query: 121 YGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRH 180
YGKY KLLIATS+D NGH+ PLAFAIV+EE +++W WFL LR V+ ++ ICLISDRH
Sbjct: 464 YGKYMGKLLIATSIDGNGHVFPLAFAIVEEESQDSWSWFLIALRHHVTQREGICLISDRH 523
Query: 181 GGIISAVNSMSNEDDVTLSVLH--HRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRK 240
GI +AV + S V S H HR+CLRH+VSNF+ K+K LK L YR GC +Q RK
Sbjct: 524 AGINAAVRNPS----VGWSPPHAQHRYCLRHVVSNFNDKFKNKVLKELAYRAGCQHQPRK 583
Query: 241 YNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPV 300
Y + +E++K ++ +++F+ + +KWTQA++ G RYGWMTTN+AECINGVLKG+ MLP+
Sbjct: 584 YERYMEELKRLDEKSVAWFSKLDTQKWTQAYDLGYRYGWMTTNIAECINGVLKGARMLPI 643
Query: 301 TALAQLTFYRCV 309
TAL QLTFYRCV
Sbjct: 644 TALVQLTFYRCV 651
BLAST of Lcy04g005480 vs. NCBI nr
Match:
XP_022153527.1 (uncharacterized protein LOC111021011 [Momordica charantia])
HSP 1 Score: 374.0 bits (959), Expect = 1.2e-99
Identity = 172/269 (63.94%), Postives = 209/269 (77.70%), Query Frame = 0
Query: 1 MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
MI+ EFC+ VR P S+ L+ IKE FGYHVPY RVWEGK K L ++FGDWDESY+LL
Sbjct: 1 MISREFCDAVRANPSTSIAILRDLIKEKFGYHVPYRRVWEGKTKALARIFGDWDESYQLL 60
Query: 61 PKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 120
PKWMYM+KHTNPGT VEWKI++ GH IL VFW+ PCI A +K ++QIDG HLY
Sbjct: 61 PKWMYMLKHTNPGTIVEWKIRNYGQPGHDILHSVFWSFGPCIAASQKFCLVLQIDGTHLY 120
Query: 121 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGG 180
KY+ LLI TS+DSNGHLLPL FAI+DEE R+TWGWFLK+LR +V+H++ICLISDRHGG
Sbjct: 121 EKYKGNLLIVTSVDSNGHLLPLVFAIIDEESRQTWGWFLKNLRKVVTHEEICLISDRHGG 180
Query: 181 IISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKI 240
IIS VN+ N T HHRFCLRH+ SNF+ KYKCT LK+ VYR G +QIRKYN+
Sbjct: 181 IISTVNNSDN--GWTRPKSHHRFCLRHVSSNFNHKYKCTELKDSVYRAGAQFQIRKYNE- 240
Query: 241 IEDIKMMNGNCMSFFNNIGIEKWTQAHNG 270
+E+IK++N +CM+FF NIGIEKWT +H+G
Sbjct: 241 VENIKLLNSSCMNFFRNIGIEKWTLSHDG 266
BLAST of Lcy04g005480 vs. NCBI nr
Match:
TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 366.3 bits (939), Expect = 2.6e-97
Identity = 175/308 (56.82%), Postives = 213/308 (69.16%), Query Frame = 0
Query: 1 MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
M+A EF E VRE+P ISV LQS IKE FGYHV Y R W+GK+K + KVFGDWDESYKLL
Sbjct: 153 MLAREFFEFVREKPSISVKSLQSMIKEKFGYHVSYRRAWDGKKKAVAKVFGDWDESYKLL 212
Query: 61 PKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 120
P+W+YMVKHTNPGT VE ++Q+T + GHVIL+ VFWA PCIEAF +CRP+IQID HLY
Sbjct: 213 PRWLYMVKHTNPGTLVELRVQATPIEGHVILSSVFWAFGPCIEAFSRCRPLIQIDCTHLY 272
Query: 121 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGG 180
GKYR KLLIATS+DSNGHLLPLAFA+V+EE ++WGWFL+HL+ IV+H +ICL+S RH G
Sbjct: 273 GKYRGKLLIATSIDSNGHLLPLAFAVVEEESADSWGWFLRHLKQIVTHDEICLLSYRHAG 332
Query: 181 IISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKI 240
IISAVN+ N T + HHRFCLRH+V
Sbjct: 333 IISAVNNPDNR--WTGANCHHRFCLRHVV------------------------------- 392
Query: 241 IEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTALA 300
+KWT+AH+GG RYGWMTTNL+EC+NGV KG+ ML + A+A
Sbjct: 393 --------------------KKWTRAHDGGFRYGWMTTNLSECMNGVFKGAQMLSINAIA 407
Query: 301 QLTFYRCV 309
Q+TF++CV
Sbjct: 453 QITFFKCV 407
BLAST of Lcy04g005480 vs. NCBI nr
Match:
RVW52006.1 (hypothetical protein CK203_068088 [Vitis vinifera])
HSP 1 Score: 355.5 bits (911), Expect = 4.5e-94
Identity = 168/309 (54.37%), Postives = 216/309 (69.90%), Query Frame = 0
Query: 2 IALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLP 61
IA E V+ IS+ L +K+ FGY+V Y R+WE KRK ++++FGDWDESY+ LP
Sbjct: 290 IAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYKRIWEAKRKAMIRIFGDWDESYQTLP 349
Query: 62 KWMYMVKHTNPGTRVEWKIQ-STHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 121
+WM +VK TNPGT+V WK G+V VFWA C+E FK CRPIIQIDG LY
Sbjct: 350 RWMNIVKLTNPGTKVVWKTSLLAGCNGNVRFMRVFWAFGACVEGFKHCRPIIQIDGTFLY 409
Query: 122 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRHG 181
GKY KLLIATS+D+NGH+ PLAFAIV+EE ++W WFL LR V+ ++ ICLISDRH
Sbjct: 410 GKYIGKLLIATSIDANGHIFPLAFAIVEEESSDSWSWFLYILRTQVTQREGICLISDRHA 469
Query: 182 GIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNK 241
GI +A+ S + HHR+CLRH+ SNF+ KY+ LK+LVYR G +Q RKY
Sbjct: 470 GIQAAIRDPS--VGWSPPYAHHRYCLRHVASNFNDKYRNKMLKDLVYRAGSQHQPRKYEA 529
Query: 242 IIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTAL 301
+ ++K ++ C+ +F + +KWT AH+GG RYGWMTTN+AECINGVLKG+ MLP+TAL
Sbjct: 530 CMTELKRLDDKCLEWFKRLDTKKWTLAHDGGHRYGWMTTNIAECINGVLKGARMLPITAL 589
Query: 302 AQLTFYRCV 309
+LTFYRCV
Sbjct: 590 VRLTFYRCV 596
BLAST of Lcy04g005480 vs. NCBI nr
Match:
XP_010647557.1 (PREDICTED: uncharacterized protein LOC104878656, partial [Vitis vinifera])
HSP 1 Score: 355.1 bits (910), Expect = 5.9e-94
Identity = 168/309 (54.37%), Postives = 216/309 (69.90%), Query Frame = 0
Query: 2 IALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLP 61
IA E V+ IS+ L +K+ FGY+V Y R+WE KRK ++++FGDWDESY+ LP
Sbjct: 290 IAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYKRIWEAKRKAMIRIFGDWDESYQTLP 349
Query: 62 KWMYMVKHTNPGTRVEWKIQ-STHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 121
+WM +VK TNPGT+V WK G+V VFWA C+E FK CRPIIQIDG LY
Sbjct: 350 RWMNIVKLTNPGTKVVWKTSLLAGCNGNVRFMRVFWAFRACVEGFKHCRPIIQIDGTFLY 409
Query: 122 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRHG 181
GKY KLLIATS+D+NGH+ PLAFAIV+EE ++W WFL LR V+ ++ ICLISDRH
Sbjct: 410 GKYIGKLLIATSIDANGHIFPLAFAIVEEESSDSWSWFLYILRTQVTQREGICLISDRHA 469
Query: 182 GIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNK 241
GI +A+ S + HHR+CLRH+ SNF+ KY+ LK+LVYR G +Q RKY
Sbjct: 470 GIQAAIRDPS--VGWSPPYAHHRYCLRHVASNFNDKYRNKMLKDLVYRAGSQHQPRKYEA 529
Query: 242 IIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTAL 301
+ ++K ++ C+ +F + +KWT AH+GG RYGWMTTN+AECINGVLKG+ MLP+TAL
Sbjct: 530 CMTELKRLDEKCLEWFKRLDTKKWTLAHDGGHRYGWMTTNIAECINGVLKGARMLPITAL 589
Query: 302 AQLTFYRCV 309
+LTFYRCV
Sbjct: 590 VRLTFYRCV 596
BLAST of Lcy04g005480 vs. NCBI nr
Match:
RVW83159.1 (hypothetical protein CK203_044939 [Vitis vinifera])
HSP 1 Score: 352.1 bits (902), Expect = 5.0e-93
Identity = 171/312 (54.81%), Postives = 222/312 (71.15%), Query Frame = 0
Query: 1 MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
+IA E V+ S+ L +K+ FGY V Y R+WE KRK +++VFGDWDESY+ L
Sbjct: 344 LIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESYQAL 403
Query: 61 PKWMYMVKHTNPGTRVEWK-IQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHL 120
PKWM +++ TNPGT+V WK I ++G+V VFWA +E FK CRPIIQIDG L
Sbjct: 404 PKWMNILQLTNPGTKVVWKTIPLGGISGNVRFMRVFWAFGASVEGFKHCRPIIQIDGTFL 463
Query: 121 YGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRH 180
YGKY KLLIATS+D NGH+ PLAFAIV+EE +++W WFL LR V+ ++ ICLISDRH
Sbjct: 464 YGKYMGKLLIATSIDGNGHVFPLAFAIVEEESQDSWSWFLIALRHHVTQREGICLISDRH 523
Query: 181 GGIISAVNSMSNEDDVTLSVLH--HRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRK 240
GI +AV + S V S H HR+CLRH+VSNF+ K+K LK L YR GC +Q RK
Sbjct: 524 AGINAAVRNPS----VGWSPPHAQHRYCLRHVVSNFNDKFKNKVLKELAYRAGCQHQPRK 583
Query: 241 YNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPV 300
Y + +E++K ++ +++F+ + +KWTQA++ G RYGWMTTN+AECINGVLKG+ MLP+
Sbjct: 584 YERYMEELKRLDEKSVAWFSKLDTQKWTQAYDLGYRYGWMTTNIAECINGVLKGARMLPI 643
Query: 301 TALAQLTFYRCV 309
TAL QLTFYRCV
Sbjct: 644 TALVQLTFYRCV 651
BLAST of Lcy04g005480 vs. TAIR 10
Match:
AT1G64260.1 (MuDR family transposase )
HSP 1 Score: 171.4 bits (433), Expect = 1.1e-42
Identity = 91/271 (33.58%), Postives = 145/271 (53.51%), Query Frame = 0
Query: 5 EFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLPKWM 64
E VR QP +S+ +L+ KE GY + ++ +GK +V+ +VFGD D+S++++PK +
Sbjct: 273 EIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPK-L 332
Query: 65 YMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLYGKYR 124
H++ G V+W+ VFW+ IE F+ CRP+I +D L GKY+
Sbjct: 333 ISAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGFQHCRPLIVVDTKSLNGKYQ 392
Query: 125 EKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLR-AIVSHKQICLISDRHGGIIS 184
KL+IA+ +D+ PLAFA+ E ++W WF +R + K +CLIS I++
Sbjct: 393 LKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIREKVTQRKDLCLISSPLRDIVA 452
Query: 185 AVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKIIED 244
VN + + HH+FCL HL S F ++ L++LV + G Q +++ + D
Sbjct: 453 VVNEPGSLWQEPWA--HHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMND 512
Query: 245 IKMMNGNCMSFFNNIGIEKWTQAHNGGIRYG 275
IK N + + I KW AH+ G+RYG
Sbjct: 513 IKEKNPEAWKWLDQIPRHKWALAHDSGLRYG 540
BLAST of Lcy04g005480 vs. TAIR 10
Match:
AT1G49920.1 (MuDR family transposase )
HSP 1 Score: 159.5 bits (402), Expect = 4.4e-39
Identity = 94/286 (32.87%), Postives = 146/286 (51.05%), Query Frame = 0
Query: 2 IALEFCETVREQPFISVLKLQSEIKENFGY-------HVPYHRVWEGKRKVLVKVFGDWD 61
I + VR QP +S +L ++ FG+ H V + K K + + FGDWD
Sbjct: 265 IPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQVVEHCSEGLVEDAKVKAIKRFFGDWD 324
Query: 62 ESYKLLPKWMYMVKHTNPGTRVEWKIQS-THLAGHVILTLVFWALCPCIEAFKKCRPIIQ 121
+S++L+PK M V H++ G V+W+ S TH H +FWA I+ F+ CRP+I
Sbjct: 325 QSFRLIPKLM-SVLHSSNGLLVDWQYDSLTHDPEHASFRGLFWAFSQSIQGFQHCRPLIV 384
Query: 122 IDGAHLYGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-IC 181
+D +L GKY+ KL+IA++ D+ PLAFA+ E ++W WFL +R V+ +Q IC
Sbjct: 385 VDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRIREKVTQRQGIC 444
Query: 182 LISDRHGGIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYK--CTRLKNLVYRGGC 241
LIS I++ +N ++ + +HRFCL HL S + LV G
Sbjct: 445 LISSPDPDILAVINEPGSQWKEPWA--YHRFCLYHLCSKLCSVSPGFDYNMHFLVDEAGS 504
Query: 242 HYQIRKYNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWM 277
Q +++ +++IK N + + +W AH+ G RYG M
Sbjct: 505 SSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQWALAHDDGRRYGIM 547
BLAST of Lcy04g005480 vs. TAIR 10
Match:
AT1G64255.1 (MuDR family transposase )
HSP 1 Score: 156.0 bits (393), Expect = 4.9e-38
Identity = 91/276 (32.97%), Postives = 135/276 (48.91%), Query Frame = 0
Query: 5 EFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLPKWM 64
E VR P ++ +L+ K+ GY + V K K + +VFGDWD+S++ PK M
Sbjct: 280 EIERAVRYMPTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLM 339
Query: 65 YMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLYGKYR 124
+ +N G V+WK VFWA IE F+ CRP+I +D +L +Y+
Sbjct: 340 SALCSSN-GLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQHCRPLIVVDTKNLNCEYQ 399
Query: 125 EKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLR-AIVSHKQICLISDRHGGIIS 184
KL+IA+ +D+ PLAFA+ E + W WFL +R + K +CLIS H II+
Sbjct: 400 LKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIREKVTQRKGLCLISSPHPDIIA 459
Query: 185 AVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKIIED 244
VN ++ + +HRF L H S FS+ + L + R G Q ++ + D
Sbjct: 460 VVNESGSQWQEPWA--YHRFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMND 519
Query: 245 IKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTN 280
IK N + + +W AH+ G RYG M N
Sbjct: 520 IKEKNPEARKWLDQFPQNRWALAHDNGRRYGIMEIN 552
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DJ59 | 6.0e-100 | 63.94 | uncharacterized protein LOC111021011 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
A0A5D3DUI1 | 1.2e-97 | 56.82 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A438EWG2 | 2.2e-94 | 54.37 | SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 P... | [more] |
A5BJW1 | 2.4e-93 | 54.81 | SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 ... | [more] |
A0A438HFK5 | 2.4e-93 | 54.81 | SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 P... | [more] |
Match Name | E-value | Identity | Description | |
XP_022153527.1 | 1.2e-99 | 63.94 | uncharacterized protein LOC111021011 [Momordica charantia] | [more] |
TYK27427.1 | 2.6e-97 | 56.82 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
RVW52006.1 | 4.5e-94 | 54.37 | hypothetical protein CK203_068088 [Vitis vinifera] | [more] |
XP_010647557.1 | 5.9e-94 | 54.37 | PREDICTED: uncharacterized protein LOC104878656, partial [Vitis vinifera] | [more] |
RVW83159.1 | 5.0e-93 | 54.81 | hypothetical protein CK203_044939 [Vitis vinifera] | [more] |