Lcy04g005480 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g005480
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionSWIM-type domain-containing protein
LocationChr04: 33926795 .. 33927721 (-)
RNA-Seq ExpressionLcy04g005480
SyntenyLcy04g005480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCATTGGAATTTTGCGAGACTGTGAGGGAGCAACCTTTTATCAGTGTGTTGAAACTACAATCAGAGATAAAAGAAAATTTTGGATACCACGTTCCTTACCACAGGGTGTGGGAAGGAAAAAGAAAAGTCTTGGTTAAAGTATTTGGTGATTGGGACGAGTCTTATAAACTTCTGCCCAAGTGGATGTATATGGTGAAACATACCAATCCTGGAACACGTGTGGAGTGGAAGATACAGAGTACACATCTTGCAGGTCATGTTATCCTTACTTTAGTGTTTTGGGCATTGTGTCCATGTATTGAGGCTTTCAAGAAATGCCGACCTATCATCCAAATAGATGGTGCTCATCTATATGGAAAATATAGAGAGAAATTACTTATTGCAACCTCATTGGACTCCAATGGCCACTTGCTTCCACTTGCATTTGCCATCGTCGATGAGGAATGCCGTGAAACATGGGGATGGTTTTTGAAACACTTGAGAGCGATCGTTTCACATAAACAGATATGTTTAATTTCTGATCGGCATGGTGGCATAATTTCAGCAGTCAACAGTATGAGTAATGAAGATGATGTGACATTGTCTGTACTTCATCACAGATTTTGCTTACGACACTTGGTCAGCAATTTCAGTAAAAAATACAAGTGTACACGATTGAAAAATCTGGTTTATCGTGGTGGGTGCCACTACCAAATTCGAAAGTACAACAAGATTATTGAAGATATTAAAATGATGAATGGCAATTGTATGAGTTTTTTCAACAATATTGGTATTGAAAAATGGACCCAAGCACACAATGGAGGCATTAGGTATGGGTGGATGACCACCAATCTAGCAGAGTGCATCAATGGAGTTCTGAAAGGAAGTCATATGTTGCCTGTCACTGCACTCGCTCAATTGACTTTCTACAGATGTGTGTAA

mRNA sequence

ATGATTGCATTGGAATTTTGCGAGACTGTGAGGGAGCAACCTTTTATCAGTGTGTTGAAACTACAATCAGAGATAAAAGAAAATTTTGGATACCACGTTCCTTACCACAGGGTGTGGGAAGGAAAAAGAAAAGTCTTGGTTAAAGTATTTGGTGATTGGGACGAGTCTTATAAACTTCTGCCCAAGTGGATGTATATGGTGAAACATACCAATCCTGGAACACGTGTGGAGTGGAAGATACAGAGTACACATCTTGCAGGTCATGTTATCCTTACTTTAGTGTTTTGGGCATTGTGTCCATGTATTGAGGCTTTCAAGAAATGCCGACCTATCATCCAAATAGATGGTGCTCATCTATATGGAAAATATAGAGAGAAATTACTTATTGCAACCTCATTGGACTCCAATGGCCACTTGCTTCCACTTGCATTTGCCATCGTCGATGAGGAATGCCGTGAAACATGGGGATGGTTTTTGAAACACTTGAGAGCGATCGTTTCACATAAACAGATATGTTTAATTTCTGATCGGCATGGTGGCATAATTTCAGCAGTCAACAGTATGAGTAATGAAGATGATGTGACATTGTCTGTACTTCATCACAGATTTTGCTTACGACACTTGGTCAGCAATTTCAGTAAAAAATACAAGTGTACACGATTGAAAAATCTGGTTTATCGTGGTGGGTGCCACTACCAAATTCGAAAGTACAACAAGATTATTGAAGATATTAAAATGATGAATGGCAATTGTATGAGTTTTTTCAACAATATTGGTATTGAAAAATGGACCCAAGCACACAATGGAGGCATTAGGTATGGGTGGATGACCACCAATCTAGCAGAGTGCATCAATGGAGTTCTGAAAGGAAGTCATATGTTGCCTGTCACTGCACTCGCTCAATTGACTTTCTACAGATGTGTGTAA

Coding sequence (CDS)

ATGATTGCATTGGAATTTTGCGAGACTGTGAGGGAGCAACCTTTTATCAGTGTGTTGAAACTACAATCAGAGATAAAAGAAAATTTTGGATACCACGTTCCTTACCACAGGGTGTGGGAAGGAAAAAGAAAAGTCTTGGTTAAAGTATTTGGTGATTGGGACGAGTCTTATAAACTTCTGCCCAAGTGGATGTATATGGTGAAACATACCAATCCTGGAACACGTGTGGAGTGGAAGATACAGAGTACACATCTTGCAGGTCATGTTATCCTTACTTTAGTGTTTTGGGCATTGTGTCCATGTATTGAGGCTTTCAAGAAATGCCGACCTATCATCCAAATAGATGGTGCTCATCTATATGGAAAATATAGAGAGAAATTACTTATTGCAACCTCATTGGACTCCAATGGCCACTTGCTTCCACTTGCATTTGCCATCGTCGATGAGGAATGCCGTGAAACATGGGGATGGTTTTTGAAACACTTGAGAGCGATCGTTTCACATAAACAGATATGTTTAATTTCTGATCGGCATGGTGGCATAATTTCAGCAGTCAACAGTATGAGTAATGAAGATGATGTGACATTGTCTGTACTTCATCACAGATTTTGCTTACGACACTTGGTCAGCAATTTCAGTAAAAAATACAAGTGTACACGATTGAAAAATCTGGTTTATCGTGGTGGGTGCCACTACCAAATTCGAAAGTACAACAAGATTATTGAAGATATTAAAATGATGAATGGCAATTGTATGAGTTTTTTCAACAATATTGGTATTGAAAAATGGACCCAAGCACACAATGGAGGCATTAGGTATGGGTGGATGACCACCAATCTAGCAGAGTGCATCAATGGAGTTCTGAAAGGAAGTCATATGTTGCCTGTCACTGCACTCGCTCAATTGACTTTCTACAGATGTGTGTAA

Protein sequence

MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLPKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLYGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGGIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTALAQLTFYRCV
Homology
BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match: A0A6J1DJ59 (uncharacterized protein LOC111021011 OS=Momordica charantia OX=3673 GN=LOC111021011 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 6.0e-100
Identity = 172/269 (63.94%), Postives = 209/269 (77.70%), Query Frame = 0

Query: 1   MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
           MI+ EFC+ VR  P  S+  L+  IKE FGYHVPY RVWEGK K L ++FGDWDESY+LL
Sbjct: 1   MISREFCDAVRANPSTSIAILRDLIKEKFGYHVPYRRVWEGKTKALARIFGDWDESYQLL 60

Query: 61  PKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 120
           PKWMYM+KHTNPGT VEWKI++    GH IL  VFW+  PCI A +K   ++QIDG HLY
Sbjct: 61  PKWMYMLKHTNPGTIVEWKIRNYGQPGHDILHSVFWSFGPCIAASQKFCLVLQIDGTHLY 120

Query: 121 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGG 180
            KY+  LLI TS+DSNGHLLPL FAI+DEE R+TWGWFLK+LR +V+H++ICLISDRHGG
Sbjct: 121 EKYKGNLLIVTSVDSNGHLLPLVFAIIDEESRQTWGWFLKNLRKVVTHEEICLISDRHGG 180

Query: 181 IISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKI 240
           IIS VN+  N    T    HHRFCLRH+ SNF+ KYKCT LK+ VYR G  +QIRKYN+ 
Sbjct: 181 IISTVNNSDN--GWTRPKSHHRFCLRHVSSNFNHKYKCTELKDSVYRAGAQFQIRKYNE- 240

Query: 241 IEDIKMMNGNCMSFFNNIGIEKWTQAHNG 270
           +E+IK++N +CM+FF NIGIEKWT +H+G
Sbjct: 241 VENIKLLNSSCMNFFRNIGIEKWTLSHDG 266

BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.2e-97
Identity = 175/308 (56.82%), Postives = 213/308 (69.16%), Query Frame = 0

Query: 1   MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
           M+A EF E VRE+P ISV  LQS IKE FGYHV Y R W+GK+K + KVFGDWDESYKLL
Sbjct: 153 MLAREFFEFVREKPSISVKSLQSMIKEKFGYHVSYRRAWDGKKKAVAKVFGDWDESYKLL 212

Query: 61  PKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 120
           P+W+YMVKHTNPGT VE ++Q+T + GHVIL+ VFWA  PCIEAF +CRP+IQID  HLY
Sbjct: 213 PRWLYMVKHTNPGTLVELRVQATPIEGHVILSSVFWAFGPCIEAFSRCRPLIQIDCTHLY 272

Query: 121 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGG 180
           GKYR KLLIATS+DSNGHLLPLAFA+V+EE  ++WGWFL+HL+ IV+H +ICL+S RH G
Sbjct: 273 GKYRGKLLIATSIDSNGHLLPLAFAVVEEESADSWGWFLRHLKQIVTHDEICLLSYRHAG 332

Query: 181 IISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKI 240
           IISAVN+  N    T +  HHRFCLRH+V                               
Sbjct: 333 IISAVNNPDNR--WTGANCHHRFCLRHVV------------------------------- 392

Query: 241 IEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTALA 300
                               +KWT+AH+GG RYGWMTTNL+EC+NGV KG+ ML + A+A
Sbjct: 393 --------------------KKWTRAHDGGFRYGWMTTNLSECMNGVFKGAQMLSINAIA 407

Query: 301 QLTFYRCV 309
           Q+TF++CV
Sbjct: 453 QITFFKCV 407

BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match: A0A438EWG2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 2.2e-94
Identity = 168/309 (54.37%), Postives = 216/309 (69.90%), Query Frame = 0

Query: 2   IALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLP 61
           IA E    V+    IS+  L   +K+ FGY+V Y R+WE KRK ++++FGDWDESY+ LP
Sbjct: 290 IAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYKRIWEAKRKAMIRIFGDWDESYQTLP 349

Query: 62  KWMYMVKHTNPGTRVEWKIQ-STHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 121
           +WM +VK TNPGT+V WK        G+V    VFWA   C+E FK CRPIIQIDG  LY
Sbjct: 350 RWMNIVKLTNPGTKVVWKTSLLAGCNGNVRFMRVFWAFGACVEGFKHCRPIIQIDGTFLY 409

Query: 122 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRHG 181
           GKY  KLLIATS+D+NGH+ PLAFAIV+EE  ++W WFL  LR  V+ ++ ICLISDRH 
Sbjct: 410 GKYIGKLLIATSIDANGHIFPLAFAIVEEESSDSWSWFLYILRTQVTQREGICLISDRHA 469

Query: 182 GIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNK 241
           GI +A+   S     +    HHR+CLRH+ SNF+ KY+   LK+LVYR G  +Q RKY  
Sbjct: 470 GIQAAIRDPS--VGWSPPYAHHRYCLRHVASNFNDKYRNKMLKDLVYRAGSQHQPRKYEA 529

Query: 242 IIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTAL 301
            + ++K ++  C+ +F  +  +KWT AH+GG RYGWMTTN+AECINGVLKG+ MLP+TAL
Sbjct: 530 CMTELKRLDDKCLEWFKRLDTKKWTLAHDGGHRYGWMTTNIAECINGVLKGARMLPITAL 589

Query: 302 AQLTFYRCV 309
            +LTFYRCV
Sbjct: 590 VRLTFYRCV 596

BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match: A5BJW1 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 2.4e-93
Identity = 171/312 (54.81%), Postives = 222/312 (71.15%), Query Frame = 0

Query: 1   MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
           +IA E    V+     S+  L   +K+ FGY V Y R+WE KRK +++VFGDWDESY+ L
Sbjct: 190 LIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESYQAL 249

Query: 61  PKWMYMVKHTNPGTRVEWK-IQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHL 120
           PKWM +++ TNPGT+V WK I    ++G+V    VFWA    +E FK CRPIIQIDG  L
Sbjct: 250 PKWMNILQLTNPGTKVVWKTIPLGGISGNVRFMRVFWAFGASVEGFKHCRPIIQIDGTFL 309

Query: 121 YGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRH 180
           YGKY  KLLIATS+D NGH+ PLAFAIV+EE +++W WFL  LR  V+ ++ ICLISDRH
Sbjct: 310 YGKYMGKLLIATSIDGNGHVFPLAFAIVEEESQDSWSWFLIALRHHVTQREGICLISDRH 369

Query: 181 GGIISAVNSMSNEDDVTLSVLH--HRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRK 240
            GI +AV + S    V  S  H  HR+CLRH+VSNF+ K+K   LK L YR GC +Q RK
Sbjct: 370 AGINAAVRNPS----VGWSPPHAQHRYCLRHVVSNFNDKFKNKVLKELAYRAGCQHQPRK 429

Query: 241 YNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPV 300
           Y + +E++K ++   +++F+ +  +KWTQA++ G RYGWMTTN+AECINGVLKG+ MLP+
Sbjct: 430 YERYMEELKRLDEKSVAWFSKLDTQKWTQAYDLGYRYGWMTTNIAECINGVLKGARMLPI 489

Query: 301 TALAQLTFYRCV 309
           TAL QLTFYRCV
Sbjct: 490 TALVQLTFYRCV 497

BLAST of Lcy04g005480 vs. ExPASy TrEMBL
Match: A0A438HFK5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 2.4e-93
Identity = 171/312 (54.81%), Postives = 222/312 (71.15%), Query Frame = 0

Query: 1   MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
           +IA E    V+     S+  L   +K+ FGY V Y R+WE KRK +++VFGDWDESY+ L
Sbjct: 344 LIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESYQAL 403

Query: 61  PKWMYMVKHTNPGTRVEWK-IQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHL 120
           PKWM +++ TNPGT+V WK I    ++G+V    VFWA    +E FK CRPIIQIDG  L
Sbjct: 404 PKWMNILQLTNPGTKVVWKTIPLGGISGNVRFMRVFWAFGASVEGFKHCRPIIQIDGTFL 463

Query: 121 YGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRH 180
           YGKY  KLLIATS+D NGH+ PLAFAIV+EE +++W WFL  LR  V+ ++ ICLISDRH
Sbjct: 464 YGKYMGKLLIATSIDGNGHVFPLAFAIVEEESQDSWSWFLIALRHHVTQREGICLISDRH 523

Query: 181 GGIISAVNSMSNEDDVTLSVLH--HRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRK 240
            GI +AV + S    V  S  H  HR+CLRH+VSNF+ K+K   LK L YR GC +Q RK
Sbjct: 524 AGINAAVRNPS----VGWSPPHAQHRYCLRHVVSNFNDKFKNKVLKELAYRAGCQHQPRK 583

Query: 241 YNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPV 300
           Y + +E++K ++   +++F+ +  +KWTQA++ G RYGWMTTN+AECINGVLKG+ MLP+
Sbjct: 584 YERYMEELKRLDEKSVAWFSKLDTQKWTQAYDLGYRYGWMTTNIAECINGVLKGARMLPI 643

Query: 301 TALAQLTFYRCV 309
           TAL QLTFYRCV
Sbjct: 644 TALVQLTFYRCV 651

BLAST of Lcy04g005480 vs. NCBI nr
Match: XP_022153527.1 (uncharacterized protein LOC111021011 [Momordica charantia])

HSP 1 Score: 374.0 bits (959), Expect = 1.2e-99
Identity = 172/269 (63.94%), Postives = 209/269 (77.70%), Query Frame = 0

Query: 1   MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
           MI+ EFC+ VR  P  S+  L+  IKE FGYHVPY RVWEGK K L ++FGDWDESY+LL
Sbjct: 1   MISREFCDAVRANPSTSIAILRDLIKEKFGYHVPYRRVWEGKTKALARIFGDWDESYQLL 60

Query: 61  PKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 120
           PKWMYM+KHTNPGT VEWKI++    GH IL  VFW+  PCI A +K   ++QIDG HLY
Sbjct: 61  PKWMYMLKHTNPGTIVEWKIRNYGQPGHDILHSVFWSFGPCIAASQKFCLVLQIDGTHLY 120

Query: 121 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGG 180
            KY+  LLI TS+DSNGHLLPL FAI+DEE R+TWGWFLK+LR +V+H++ICLISDRHGG
Sbjct: 121 EKYKGNLLIVTSVDSNGHLLPLVFAIIDEESRQTWGWFLKNLRKVVTHEEICLISDRHGG 180

Query: 181 IISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKI 240
           IIS VN+  N    T    HHRFCLRH+ SNF+ KYKCT LK+ VYR G  +QIRKYN+ 
Sbjct: 181 IISTVNNSDN--GWTRPKSHHRFCLRHVSSNFNHKYKCTELKDSVYRAGAQFQIRKYNE- 240

Query: 241 IEDIKMMNGNCMSFFNNIGIEKWTQAHNG 270
           +E+IK++N +CM+FF NIGIEKWT +H+G
Sbjct: 241 VENIKLLNSSCMNFFRNIGIEKWTLSHDG 266

BLAST of Lcy04g005480 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 366.3 bits (939), Expect = 2.6e-97
Identity = 175/308 (56.82%), Postives = 213/308 (69.16%), Query Frame = 0

Query: 1   MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
           M+A EF E VRE+P ISV  LQS IKE FGYHV Y R W+GK+K + KVFGDWDESYKLL
Sbjct: 153 MLAREFFEFVREKPSISVKSLQSMIKEKFGYHVSYRRAWDGKKKAVAKVFGDWDESYKLL 212

Query: 61  PKWMYMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 120
           P+W+YMVKHTNPGT VE ++Q+T + GHVIL+ VFWA  PCIEAF +CRP+IQID  HLY
Sbjct: 213 PRWLYMVKHTNPGTLVELRVQATPIEGHVILSSVFWAFGPCIEAFSRCRPLIQIDCTHLY 272

Query: 121 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQICLISDRHGG 180
           GKYR KLLIATS+DSNGHLLPLAFA+V+EE  ++WGWFL+HL+ IV+H +ICL+S RH G
Sbjct: 273 GKYRGKLLIATSIDSNGHLLPLAFAVVEEESADSWGWFLRHLKQIVTHDEICLLSYRHAG 332

Query: 181 IISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKI 240
           IISAVN+  N    T +  HHRFCLRH+V                               
Sbjct: 333 IISAVNNPDNR--WTGANCHHRFCLRHVV------------------------------- 392

Query: 241 IEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTALA 300
                               +KWT+AH+GG RYGWMTTNL+EC+NGV KG+ ML + A+A
Sbjct: 393 --------------------KKWTRAHDGGFRYGWMTTNLSECMNGVFKGAQMLSINAIA 407

Query: 301 QLTFYRCV 309
           Q+TF++CV
Sbjct: 453 QITFFKCV 407

BLAST of Lcy04g005480 vs. NCBI nr
Match: RVW52006.1 (hypothetical protein CK203_068088 [Vitis vinifera])

HSP 1 Score: 355.5 bits (911), Expect = 4.5e-94
Identity = 168/309 (54.37%), Postives = 216/309 (69.90%), Query Frame = 0

Query: 2   IALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLP 61
           IA E    V+    IS+  L   +K+ FGY+V Y R+WE KRK ++++FGDWDESY+ LP
Sbjct: 290 IAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYKRIWEAKRKAMIRIFGDWDESYQTLP 349

Query: 62  KWMYMVKHTNPGTRVEWKIQ-STHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 121
           +WM +VK TNPGT+V WK        G+V    VFWA   C+E FK CRPIIQIDG  LY
Sbjct: 350 RWMNIVKLTNPGTKVVWKTSLLAGCNGNVRFMRVFWAFGACVEGFKHCRPIIQIDGTFLY 409

Query: 122 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRHG 181
           GKY  KLLIATS+D+NGH+ PLAFAIV+EE  ++W WFL  LR  V+ ++ ICLISDRH 
Sbjct: 410 GKYIGKLLIATSIDANGHIFPLAFAIVEEESSDSWSWFLYILRTQVTQREGICLISDRHA 469

Query: 182 GIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNK 241
           GI +A+   S     +    HHR+CLRH+ SNF+ KY+   LK+LVYR G  +Q RKY  
Sbjct: 470 GIQAAIRDPS--VGWSPPYAHHRYCLRHVASNFNDKYRNKMLKDLVYRAGSQHQPRKYEA 529

Query: 242 IIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTAL 301
            + ++K ++  C+ +F  +  +KWT AH+GG RYGWMTTN+AECINGVLKG+ MLP+TAL
Sbjct: 530 CMTELKRLDDKCLEWFKRLDTKKWTLAHDGGHRYGWMTTNIAECINGVLKGARMLPITAL 589

Query: 302 AQLTFYRCV 309
            +LTFYRCV
Sbjct: 590 VRLTFYRCV 596

BLAST of Lcy04g005480 vs. NCBI nr
Match: XP_010647557.1 (PREDICTED: uncharacterized protein LOC104878656, partial [Vitis vinifera])

HSP 1 Score: 355.1 bits (910), Expect = 5.9e-94
Identity = 168/309 (54.37%), Postives = 216/309 (69.90%), Query Frame = 0

Query: 2   IALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLP 61
           IA E    V+    IS+  L   +K+ FGY+V Y R+WE KRK ++++FGDWDESY+ LP
Sbjct: 290 IAREVQNVVQSDHTISIAALHQIVKDKFGYNVHYKRIWEAKRKAMIRIFGDWDESYQTLP 349

Query: 62  KWMYMVKHTNPGTRVEWKIQ-STHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLY 121
           +WM +VK TNPGT+V WK        G+V    VFWA   C+E FK CRPIIQIDG  LY
Sbjct: 350 RWMNIVKLTNPGTKVVWKTSLLAGCNGNVRFMRVFWAFRACVEGFKHCRPIIQIDGTFLY 409

Query: 122 GKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRHG 181
           GKY  KLLIATS+D+NGH+ PLAFAIV+EE  ++W WFL  LR  V+ ++ ICLISDRH 
Sbjct: 410 GKYIGKLLIATSIDANGHIFPLAFAIVEEESSDSWSWFLYILRTQVTQREGICLISDRHA 469

Query: 182 GIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNK 241
           GI +A+   S     +    HHR+CLRH+ SNF+ KY+   LK+LVYR G  +Q RKY  
Sbjct: 470 GIQAAIRDPS--VGWSPPYAHHRYCLRHVASNFNDKYRNKMLKDLVYRAGSQHQPRKYEA 529

Query: 242 IIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPVTAL 301
            + ++K ++  C+ +F  +  +KWT AH+GG RYGWMTTN+AECINGVLKG+ MLP+TAL
Sbjct: 530 CMTELKRLDEKCLEWFKRLDTKKWTLAHDGGHRYGWMTTNIAECINGVLKGARMLPITAL 589

Query: 302 AQLTFYRCV 309
            +LTFYRCV
Sbjct: 590 VRLTFYRCV 596

BLAST of Lcy04g005480 vs. NCBI nr
Match: RVW83159.1 (hypothetical protein CK203_044939 [Vitis vinifera])

HSP 1 Score: 352.1 bits (902), Expect = 5.0e-93
Identity = 171/312 (54.81%), Postives = 222/312 (71.15%), Query Frame = 0

Query: 1   MIALEFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLL 60
           +IA E    V+     S+  L   +K+ FGY V Y R+WE KRK +++VFGDWDESY+ L
Sbjct: 344 LIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESYQAL 403

Query: 61  PKWMYMVKHTNPGTRVEWK-IQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHL 120
           PKWM +++ TNPGT+V WK I    ++G+V    VFWA    +E FK CRPIIQIDG  L
Sbjct: 404 PKWMNILQLTNPGTKVVWKTIPLGGISGNVRFMRVFWAFGASVEGFKHCRPIIQIDGTFL 463

Query: 121 YGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-ICLISDRH 180
           YGKY  KLLIATS+D NGH+ PLAFAIV+EE +++W WFL  LR  V+ ++ ICLISDRH
Sbjct: 464 YGKYMGKLLIATSIDGNGHVFPLAFAIVEEESQDSWSWFLIALRHHVTQREGICLISDRH 523

Query: 181 GGIISAVNSMSNEDDVTLSVLH--HRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRK 240
            GI +AV + S    V  S  H  HR+CLRH+VSNF+ K+K   LK L YR GC +Q RK
Sbjct: 524 AGINAAVRNPS----VGWSPPHAQHRYCLRHVVSNFNDKFKNKVLKELAYRAGCQHQPRK 583

Query: 241 YNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTNLAECINGVLKGSHMLPV 300
           Y + +E++K ++   +++F+ +  +KWTQA++ G RYGWMTTN+AECINGVLKG+ MLP+
Sbjct: 584 YERYMEELKRLDEKSVAWFSKLDTQKWTQAYDLGYRYGWMTTNIAECINGVLKGARMLPI 643

Query: 301 TALAQLTFYRCV 309
           TAL QLTFYRCV
Sbjct: 644 TALVQLTFYRCV 651

BLAST of Lcy04g005480 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-42
Identity = 91/271 (33.58%), Postives = 145/271 (53.51%), Query Frame = 0

Query: 5   EFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLPKWM 64
           E    VR QP +S+ +L+   KE  GY +   ++ +GK +V+ +VFGD D+S++++PK +
Sbjct: 273 EIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPK-L 332

Query: 65  YMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLYGKYR 124
               H++ G  V+W+              VFW+    IE F+ CRP+I +D   L GKY+
Sbjct: 333 ISAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGFQHCRPLIVVDTKSLNGKYQ 392

Query: 125 EKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLR-AIVSHKQICLISDRHGGIIS 184
            KL+IA+ +D+     PLAFA+  E   ++W WF   +R  +   K +CLIS     I++
Sbjct: 393 LKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIREKVTQRKDLCLISSPLRDIVA 452

Query: 185 AVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKIIED 244
            VN   +      +  HH+FCL HL S F   ++   L++LV + G   Q  +++  + D
Sbjct: 453 VVNEPGSLWQEPWA--HHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMND 512

Query: 245 IKMMNGNCMSFFNNIGIEKWTQAHNGGIRYG 275
           IK  N     + + I   KW  AH+ G+RYG
Sbjct: 513 IKEKNPEAWKWLDQIPRHKWALAHDSGLRYG 540

BLAST of Lcy04g005480 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 159.5 bits (402), Expect = 4.4e-39
Identity = 94/286 (32.87%), Postives = 146/286 (51.05%), Query Frame = 0

Query: 2   IALEFCETVREQPFISVLKLQSEIKENFGY-------HVPYHRVWEGKRKVLVKVFGDWD 61
           I  +    VR QP +S  +L    ++ FG+       H     V + K K + + FGDWD
Sbjct: 265 IPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQVVEHCSEGLVEDAKVKAIKRFFGDWD 324

Query: 62  ESYKLLPKWMYMVKHTNPGTRVEWKIQS-THLAGHVILTLVFWALCPCIEAFKKCRPIIQ 121
           +S++L+PK M  V H++ G  V+W+  S TH   H     +FWA    I+ F+ CRP+I 
Sbjct: 325 QSFRLIPKLM-SVLHSSNGLLVDWQYDSLTHDPEHASFRGLFWAFSQSIQGFQHCRPLIV 384

Query: 122 IDGAHLYGKYREKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLRAIVSHKQ-IC 181
           +D  +L GKY+ KL+IA++ D+     PLAFA+  E   ++W WFL  +R  V+ +Q IC
Sbjct: 385 VDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRIREKVTQRQGIC 444

Query: 182 LISDRHGGIISAVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYK--CTRLKNLVYRGGC 241
           LIS     I++ +N   ++     +  +HRFCL HL S            +  LV   G 
Sbjct: 445 LISSPDPDILAVINEPGSQWKEPWA--YHRFCLYHLCSKLCSVSPGFDYNMHFLVDEAGS 504

Query: 242 HYQIRKYNKIIEDIKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWM 277
             Q  +++  +++IK  N     + +     +W  AH+ G RYG M
Sbjct: 505 SSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQWALAHDDGRRYGIM 547

BLAST of Lcy04g005480 vs. TAIR 10
Match: AT1G64255.1 (MuDR family transposase )

HSP 1 Score: 156.0 bits (393), Expect = 4.9e-38
Identity = 91/276 (32.97%), Postives = 135/276 (48.91%), Query Frame = 0

Query: 5   EFCETVREQPFISVLKLQSEIKENFGYHVPYHRVWEGKRKVLVKVFGDWDESYKLLPKWM 64
           E    VR  P  ++ +L+   K+  GY +    V   K K + +VFGDWD+S++  PK M
Sbjct: 280 EIERAVRYMPTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLM 339

Query: 65  YMVKHTNPGTRVEWKIQSTHLAGHVILTLVFWALCPCIEAFKKCRPIIQIDGAHLYGKYR 124
             +  +N G  V+WK              VFWA    IE F+ CRP+I +D  +L  +Y+
Sbjct: 340 SALCSSN-GLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQHCRPLIVVDTKNLNCEYQ 399

Query: 125 EKLLIATSLDSNGHLLPLAFAIVDEECRETWGWFLKHLR-AIVSHKQICLISDRHGGIIS 184
            KL+IA+ +D+     PLAFA+  E   + W WFL  +R  +   K +CLIS  H  II+
Sbjct: 400 LKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIREKVTQRKGLCLISSPHPDIIA 459

Query: 185 AVNSMSNEDDVTLSVLHHRFCLRHLVSNFSKKYKCTRLKNLVYRGGCHYQIRKYNKIIED 244
            VN   ++     +  +HRF L H  S FS+ +    L   + R G   Q  ++   + D
Sbjct: 460 VVNESGSQWQEPWA--YHRFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMND 519

Query: 245 IKMMNGNCMSFFNNIGIEKWTQAHNGGIRYGWMTTN 280
           IK  N     + +     +W  AH+ G RYG M  N
Sbjct: 520 IKEKNPEARKWLDQFPQNRWALAHDNGRRYGIMEIN 552

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DJ596.0e-10063.94uncharacterized protein LOC111021011 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A5D3DUI11.2e-9756.82Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A438EWG22.2e-9454.37SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 P... [more]
A5BJW12.4e-9354.81SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 ... [more]
A0A438HFK52.4e-9354.81SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 P... [more]
Match NameE-valueIdentityDescription
XP_022153527.11.2e-9963.94uncharacterized protein LOC111021011 [Momordica charantia][more]
TYK27427.12.6e-9756.82mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
RVW52006.14.5e-9454.37hypothetical protein CK203_068088 [Vitis vinifera][more]
XP_010647557.15.9e-9454.37PREDICTED: uncharacterized protein LOC104878656, partial [Vitis vinifera][more]
RVW83159.15.0e-9354.81hypothetical protein CK203_044939 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT1G64260.11.1e-4233.58MuDR family transposase [more]
AT1G49920.14.4e-3932.87MuDR family transposase [more]
AT1G64255.14.9e-3832.97MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018289MULE transposase domainPFAMPF10551MULEcoord: 111..211
e-value: 3.7E-14
score: 53.0
NoneNo IPR availablePANTHERPTHR31973POLYPROTEIN, PUTATIVE-RELATEDcoord: 25..278
NoneNo IPR availablePANTHERPTHR31973:SF135SUBFAMILY NOT NAMEDcoord: 25..278

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g005480.1Lcy04g005480.1mRNA