Lcy04g005320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g005320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zf-RVT domain-containing protein
Location	Chr04: 33522773 .. 33523234 (+)
RNA-Seq Expression	Lcy04g005320
Synteny	Lcy04g005320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACCTTGTAGAGTATCCGACTGTGGCAAATGATCTCTATAAGGTTATTTGGATCGAGTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGCTGATCGACTTCAACGACGGATGCCTCATTTTCATTTATCTCCATCTTGGTGCATAATGTGTGCCGCTAGTTCAGAACATTCTGAGCACCTTTTTGTTCACTGTACCTTCACTTACAGATATTGGTCAGAGATTCTTGATGTTTTTGGATGGTCCACTGCTTTTCCAAATTGCATTAAGGATATTCTTACTCTCATTTTTGTGGGGCATCCCTTTCATGGAGAAAAGAAGATCTTATGGCTTGCTTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCATCCTTTGATAAATTCATGGATTGA

mRNA sequence

ATGGAAGACCTTGTAGAGTATCCGACTGTGGCAAATGATCTCTATAAGGTTATTTGGATCGAGTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGCTGATCGACTTCAACGACGGATGCCTCATTTTCATTTATCTCCATCTTGGTGCATAATGTGTGCCGCTAGTTCAGAACATTCTGAGCACCTTTTTGTTCACTGTACCTTCACTTACAGATATTGGTCAGAGATTCTTGATGTTTTTGGATGGTCCACTGCTTTTCCAAATTGCATTAAGGATATTCTTACTCTCATTTTTGTGGGGCATCCCTTTCATGGAGAAAAGAAGATCTTATGGCTTGCTTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCATCCTTTGATAAATTCATGGATTGA

Coding sequence (CDS)

ATGGAAGACCTTGTAGAGTATCCGACTGTGGCAAATGATCTCTATAAGGTTATTTGGATCGAGTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGCTGATCGACTTCAACGACGGATGCCTCATTTTCATTTATCTCCATCTTGGTGCATAATGTGTGCCGCTAGTTCAGAACATTCTGAGCACCTTTTTGTTCACTGTACCTTCACTTACAGATATTGGTCAGAGATTCTTGATGTTTTTGGATGGTCCACTGCTTTTCCAAATTGCATTAAGGATATTCTTACTCTCATTTTTGTGGGGCATCCCTTTCATGGAGAAAAGAAGATCTTATGGCTTGCTTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCATCCTTTGATAAATTCATGGATTGA

Protein sequence

MEDLVEYPTVANDLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFFWFLWGERNSRIFRDSFSSFDKFMD

Homology

[Close]

BLAST of Lcy04g005320 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-23
Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 13   DLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHL 72
            +LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HL
Sbjct: 974  NLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHL 1033

Query: 73   FVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFFWFL 132
            F+HC ++ + WS+   +  W++  P  ++ ++  I        +K ++    N    W +
Sbjct: 1034 FIHCPYSQQLWSKAKALLNWNST-PTDVQSLIQNI-CSLNIRNQKGLITFNTNATILWKI 1093

Query: 133  WGERNSRIFR 143
            W ERN+RIF+
Sbjct: 1094 WLERNNRIFK 1101

[Close]

BLAST of Lcy04g005320 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.5e-23
Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 14  LYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHLF 73
           LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HLF
Sbjct: 867 LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 926

Query: 74  VHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFFWFLW 133
           +HC ++ + WS+   +  W++  PN +K +   I        +K ++      +  W +W
Sbjct: 927 IHCPYSQQLWSKAQALLKWNST-PNDVKSLAQNI-CSLNIKTQKGLITFNTIAILLWKIW 986

Query: 134 GERNSRIFRDSFSSF 149
            ERN+RIF+     F
Sbjct: 987 LERNNRIFKQQKKEF 999

[Close]

BLAST of Lcy04g005320 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.5e-23
Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 14  LYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHLF 73
           LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HLF
Sbjct: 773 LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 832

Query: 74  VHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFFWFLW 133
           +HC ++ + WS+   +  W++  PN +K +   I        +K ++      +  W +W
Sbjct: 833 IHCPYSQQLWSKAQALLKWNST-PNDVKSLAQNI-CSLNIKTQKGLITFNTIAILLWKIW 892

Query: 134 GERNSRIFRDSFSSF 149
            ERN+RIF+     F
Sbjct: 893 LERNNRIFKQQKKEF 905

[Close]

BLAST of Lcy04g005320 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 13  DLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHL 72
           +LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HL
Sbjct: 317 NLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHL 376

Query: 73  FVHCTFTYRYWSEILDVFGWS---TAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFF 132
           F+HC ++ + WS+   +  W+   T   + +++I +L         +K ++    + +  
Sbjct: 377 FIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICSL-----NIRNQKGLITFNTSAILL 436

Query: 133 WFLWGERNSRIFR 143
           W +W ERN+RIF+
Sbjct: 437 WKIWLERNNRIFK 444

[Close]

BLAST of Lcy04g005320 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 13  DLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHL 72
           +LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HL
Sbjct: 274 NLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHL 333

Query: 73  FVHCTFTYRYWSEILDVFGWS---TAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFF 132
           F+HC ++ + WS+   +  W+   T   + +++I +L         +K ++    + +  
Sbjct: 334 FIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICSL-----NIRNQKGLITFNTSAILL 393

Query: 133 WFLWGERNSRIFR 143
           W +W ERN+RIF+
Sbjct: 394 WKIWLERNNRIFK 401

[Close]

BLAST of Lcy04g005320 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 4.6e-23
Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 13   DLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHL 72
            +LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HL
Sbjct: 974  NLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHL 1033

Query: 73   FVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFFWFL 132
            F+HC ++ + WS+   +  W++  P  ++ ++  I        +K ++    N    W +
Sbjct: 1034 FIHCPYSQQLWSKAKALLNWNST-PTDVQSLIQNI-CSLNIRNQKGLITFNTNATILWKI 1093

Query: 133  WGERNSRIFR 143
            W ERN+RIF+
Sbjct: 1094 WLERNNRIFK 1101

[Close]

BLAST of Lcy04g005320 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 14  LYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHLF 73
           LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HLF
Sbjct: 773 LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 832

Query: 74  VHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFFWFLW 133
           +HC ++ + WS+   +  W++  PN +K +   I        +K ++      +  W +W
Sbjct: 833 IHCPYSQQLWSKAQALLKWNST-PNDVKSLAQNI-CSLNIKTQKGLITFNTIAILLWKIW 892

Query: 134 GERNSRIFRDSFSSF 149
            ERN+RIF+     F
Sbjct: 893 LERNNRIFKQQKKEF 905

[Close]

BLAST of Lcy04g005320 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 14  LYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHLF 73
           LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HLF
Sbjct: 867 LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 926

Query: 74  VHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFFWFLW 133
           +HC ++ + WS+   +  W++  PN +K +   I        +K ++      +  W +W
Sbjct: 927 IHCPYSQQLWSKAQALLKWNST-PNDVKSLAQNI-CSLNIKTQKGLITFNTIAILLWKIW 986

Query: 134 GERNSRIFRDSFSSF 149
            ERN+RIF+     F
Sbjct: 987 LERNNRIFKQQKKEF 999

[Close]

BLAST of Lcy04g005320 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-22
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 13  DLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHL 72
           +LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HL
Sbjct: 317 NLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHL 376

Query: 73  FVHCTFTYRYWSEILDVFGWS---TAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFF 132
           F+HC ++ + WS+   +  W+   T   + +++I +L         +K ++    + +  
Sbjct: 377 FIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICSL-----NIRNQKGLITFNTSAILL 436

Query: 133 WFLWGERNSRIFR 143
           W +W ERN+RIF+
Sbjct: 437 WKIWLERNNRIFK 444

[Close]

BLAST of Lcy04g005320 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-22
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 13  DLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHL 72
           +LYK +W   +PKK K F+W L HG INTADRLQ+R+P++ LSP+WC MC  S E   HL
Sbjct: 274 NLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHL 333

Query: 73  FVHCTFTYRYWSEILDVFGWS---TAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFF 132
           F+HC ++ + WS+   +  W+   T   + +++I +L         +K ++    + +  
Sbjct: 334 FIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICSL-----NIRNQKGLITFNTSAILL 393

Query: 133 WFLWGERNSRIFR 143
           W +W ERN+RIF+
Sbjct: 394 WKIWLERNNRIFK 401

The following BLAST results are available for this feature:

BLAST of Lcy04g005320 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g005320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9I7	2.2e-23	40.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	6.5e-23	40.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	6.5e-23	40.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	1.1e-22	39.10	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	1.1e-22	39.10	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lcy04g005320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039950.1	4.6e-23	40.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0044556.1	1.3e-22	40.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.3e-22	40.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	2.3e-22	39.10	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	2.3e-22	39.10	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy04g005320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 12..83 e-value: 5.2E-15 score: 55.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g005320.1	Lcy04g005320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity