Lcy04g004960 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g004960
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr04: 32362953 .. 32364369 (+)
RNA-Seq Expression	Lcy04g004960
Synteny	Lcy04g004960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCATCCACTTCGAAAGCCCGTAAACATATTTGGACATCAATGGAGGATGAAGTTTTGGTCCAATGCCTGTTTCAGTTAGTTCAAGCAGGTGGTTGGAAGGTTGACAACGAGACCTTTAGATCGGGGCATTTGCAACAAGTACTGAAGTTGATGAAAGAGAAACTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTATAGAGTGACGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGGTTTGGGTGGAATGATGAACGAAAGTGCATTAAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAGGGTAAGAATTCGAACATGATCCACAGAATTAAAAAATGTTATATGATTATGTAGGTTAATTGTGTTAACATGTTGAATATAGGTACACCCACATGCCCGAGGTATGAGGAACAAGTCATTCTCCTACTTCGACGACCTAGTAATTGTGTTCGGGAAGGATAAGGCTAATGGAGAAGGAGCTTTGATTCCAAAAGAAGTGGCTACCGATCTTGATAAGTGTTGCATGTGTATCTTGGGAAGGCAACCATGACCCTACTACCTTTGCAATCTGCTCGATAGCTTTTGTTGGACCATCATATTTACTATTTCCTTGACTTAATTTCACATGTAATGTTGTAACGCCCCCAAAATCTTACCTAAACTAGGGAACATTACTAAACTTTTACTCTAACGCCAACTTGATGCCCCGAAAATTTCAGCAGCATAACGGCGTAACTAAAGCTAACAAAAAATTTTGAACACCTGAAAGACAAGAATACACACTTCTAAAATCATAACACAACCTCTTCTTCATTTGAAGACATCCCAAACATACCAAATAAAATAAGAACTAACTCCAATTCTCCAGTAAGTATCATACGAGTCAGATCTCGTAAGAAGTGCAGTTAACGGAACTAACACACCCTAAATAAAAGAGCTTCAAACTTAAATCTATTACAACAACCAAACGAGTTAACCAACAACTACATCGACTTTAACAAAATCCAGTACGAGTAAATGAAACTAGCTAACTATCTAATGGTCTCCTCTTCCAAGCCTCCTCCTCATCACCAAGTCCAGATATGGTCTCATAACCTGCAAAAATCTGGTGGTGGATCCGTACAATACAGCGGTACTGAGTAAGTGGCTCACACCTGAAGAGCCATCAAACAACGTACAACATACAAGGCAAACATCATGCTTTTCAATCACAATAACATGCCTTATATACAAGGTGAGCAATCAGCACATAGAACATACTCAACTAATACAATCGTGCAACAACCATGCACCTAACGCATGAATTCTGCACCATGCAATGCACACTCAAAATACATGAATTCCGCACCATGCCATGCATACTCAAAACACATGAA

mRNA sequence

ATGGCATCATCCACTTCGAAAGCCCGTAAACATATTTGGACATCAATGGAGGATGAAGTTTTGGTCCAATGCCTGTTTCAGTTAGTTCAAGCAGGTGGTTGGAAGGTTGACAACGAGACCTTTAGATCGGGGCATTTGCAACAAGTACTGAAGTTGATGAAAGAGAAACTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTATAGAGTGACGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGGTTTGGGTGGAATGATGAACGAAAGTGCATTAAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAGGGTACACCCACATGCCCGAGGTATGAGGAACAAGTCATTCTCCTACTTCGACGACCTAGTAATTGTGTTCGGGAAGGATAAGGCTAATGGAGAAGGAGCTTTGATTCCAAAAGAAGTGGCTACCGATCTTGATAAGTGTTGCATGTGTATCTTGGGAAGGCAACCATGACCCTACTACCTTTGCAATCTGCTCGATAGCTTTTGTTGGACCATCATATTTACTATTTCCTTGACTTAATTTCACATGTAATGTTGTAACGCCCCCAAAATCTTACCTAAACTAGGGAACATTACTAAACTTTTACTCTAACGCCAACTTGATGCCCCGAAAATTTCAGCAGCATAACGGCGTAACTAAAGCTAACAAAAAATTTTGAACACCTGAAAGACAAGAATACACACTTCTAAAATCATAACACAACCTCTTCTTCATTTGAAGACATCCCAAACATACCAAATAAAATAAGAACTAACTCCAATTCTCCAGTAAGTATCATACGAGTCAGATCTCGTAAGAAGTGCAGTTAACGGAACTAACACACCCTAAATAAAAGAGCTTCAAACTTAAATCTATTACAACAACCAAACGAGTTAACCAACAACTACATCGACTTTAACAAAATCCAGTACGAGTAAATGAAACTAGCTAACTATCTAATGGTCTCCTCTTCCAAGCCTCCTCCTCATCACCAAGTCCAGATATGGTCTCATAACCTGCAAAAATCTGGTGGTGGATCCGTACAATACAGCGGTACTGAGTAAGTGGCTCACACCTGAAGAGCCATCAAACAACGTACAACATACAAGGCAAACATCATGCTTTTCAATCACAATAACATGCCTTATATACAAGGTGAGCAATCAGCACATAGAACATACTCAACTAATACAATCGTGCAACAACCATGCACCTAACGCATGAATTCTGCACCATGCAATGCACACTCAAAATACATGAATTCCGCACCATGCCATGCATACTCAAAACACATGAA

Coding sequence (CDS)

ATGGCATCATCCACTTCGAAAGCCCGTAAACATATTTGGACATCAATGGAGGATGAAGTTTTGGTCCAATGCCTGTTTCAGTTAGTTCAAGCAGGTGGTTGGAAGGTTGACAACGAGACCTTTAGATCGGGGCATTTGCAACAAGTACTGAAGTTGATGAAAGAGAAACTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTATAGAGTGACGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGGTTTGGGTGGAATGATGAACGAAAGTGCATTAAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAGGGTACACCCACATGCCCGAGGTATGAGGAACAAGTCATTCTCCTACTTCGACGACCTAGTAATTGTGTTCGGGAAGGATAAGGCTAATGGAGAAGGAGCTTTGATTCCAAAAGAAGTGGCTACCGATCTTGATAAGTGTTGCATGTGTATCTTGGGAAGGCAACCATGA

Protein sequence

MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVATDLDKCCMCILGRQP

Homology

[Close]

BLAST of Lcy04g004960 vs. ExPASy Swiss-Prot
Match: O82368 (Uncharacterized protein At2g29880 OS=Arabidopsis thaliana OX=3702 GN=At2g29880 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 40/150 (26.67%), Postives = 66/150 (44.00%), Query Frame = 0


Query: 2   ASSTSKARKH----IWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKL 61
           A  TSK +K      W+  E   L   L   ++  GW+  N T     +++ +  +  K 
Sbjct: 7   AGETSKKKKKGPYMSWSDQECYELTAILVDAIKR-GWRDKNGTISKTTVERKILPLLNKK 66

Query: 62  PRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHP 121
            +C+   T  L  R+  +K++Y     +     SGFGW+   K   A   V+  ++  HP
Sbjct: 67  FKCNKTYTNYLS-RMKSMKKEYSVYAALFW-FSSGFGWDPITKQFTAPDDVWAAYLMGHP 126

Query: 122 HARGMRNKSFSYFDDLVIVFGKDKANGEGA 148
           +   MR  +F  F+DL ++F    A G  A
Sbjct: 127 NHHHMRTSTFEDFEDLQLIFESAIAKGNNA 153

[Close]

BLAST of Lcy04g004960 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 8.2e-51
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRC 60
           MAS+ SKA KH WT+++D+ LV+CL QLV+ GGW+ +NETF+  +L QV KLMKEK+PR 
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  DIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHAR 120
           +IQVT  LE RV  LK+QY AI +MMGP CS FGWN+ERKCI+AEKSVFDDWV+ HP+AR
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 120

Query: 121 GMRNKSFSYFDDLVIVFGKDKANG 145
           G+ NK F+YF DL IVFG+DKA G
Sbjct: 121 GLLNKPFAYFYDLEIVFGRDKATG 144

[Close]

BLAST of Lcy04g004960 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 8.2e-51
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRC 60
           MAS+ SKA KH WT+++D+ LV+CL QLV+ GGW+ +NETF+  +L QV KLMKEK+PR 
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  DIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHAR 120
           +IQVT  LE RV  LK+QY AI +MMGP CS FGWN+ERKCI+AEKSVFDDWV+ HP+AR
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 152

Query: 121 GMRNKSFSYFDDLVIVFGKDKANG 145
           G+ NK F+YF DL IVFG+DKA G
Sbjct: 153 GLLNKPFAYFYDLEIVFGRDKATG 176

[Close]

BLAST of Lcy04g004960 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.1e-46
Identity = 93/155 (60.00%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRC 60
           MAS  SK  KH WT++EDE LV+CL QLV+ G W+VDN TF+ G+L QV KLMKEK+   
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  DIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHAR 120
           +IQVTP LE  V ILK+QY  I EMMGP CSGF WN ERKCI+AEKSV +DWV+ H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205

Query: 121 GMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT 156
            + NK F YF DL IVFG+D+A G     P E+ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

[Close]

BLAST of Lcy04g004960 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.1e-46
Identity = 93/155 (60.00%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRC 60
           MAS  SK  KH WT++EDE LV+CL QLV+ G W+VDN TF+ G+L QV KLMKEK+   
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  DIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHAR 120
           +IQVTP LE  V ILK+QY  I EMMGP CSGF WN ERKCI+AEKSV +DWV+ H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205

Query: 121 GMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT 156
            + NK F YF DL IVFG+D+A G     P E+ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

[Close]

BLAST of Lcy04g004960 vs. ExPASy TrEMBL
Match: A0A5D3DBP2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00100 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 79/145 (54.48%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 3   SSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDI 62
           S++++A +H+WT  E+  LV+CL +LV  GGWK DN TFR G+L Q++++M EKLP C +
Sbjct: 2   STSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRIMAEKLPGCQV 61

Query: 63  QVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGM 122
           + T  ++ R+  LKR + AI EM GP CSGFGWNDE KCI AEK +FD+WVR HP A+G+
Sbjct: 62  RATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGL 121

Query: 123 RNKSFSYFDDLVIVFGKDKANGEGA 148
            NK FSY+D+L  VFG+D+A G  A
Sbjct: 122 LNKPFSYYDELTYVFGRDRATGRFA 146

[Close]

BLAST of Lcy04g004960 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-50
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRC 60
           MAS+ SKA KH WT+++D+ LV+CL QLV+ GGW+ +NETF+  +L QV KLMKEK+PR 
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  DIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHAR 120
           +IQVT  LE RV  LK+QY AI +MMGP CS FGWN+ERKCI+AEKSVFDDWV+ HP+AR
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 120

Query: 121 GMRNKSFSYFDDLVIVFGKDKANG 145
           G+ NK F+YF DL IVFG+DKA G
Sbjct: 121 GLLNKPFAYFYDLEIVFGRDKATG 144

[Close]

BLAST of Lcy04g004960 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-50
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRC 60
           MAS+ SKA KH WT+++D+ LV+CL QLV+ GGW+ +NETF+  +L QV KLMKEK+PR 
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  DIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHAR 120
           +IQVT  LE RV  LK+QY AI +MMGP CS FGWN+ERKCI+AEKSVFDDWV+ HP+AR
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 152

Query: 121 GMRNKSFSYFDDLVIVFGKDKANG 145
           G+ NK F+YF DL IVFG+DKA G
Sbjct: 153 GLLNKPFAYFYDLEIVFGRDKATG 176

[Close]

BLAST of Lcy04g004960 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-46
Identity = 93/155 (60.00%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRC 60
           MAS  SK  KH WT++EDE LV+CL QLV+ G W+VDN TF+ G+L QV KLMKEK+   
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  DIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHAR 120
           +IQVTP LE  V ILK+QY  I EMMGP CSGF WN ERKCI+AEKSV +DWV+ H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205

Query: 121 GMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT 156
            + NK F YF DL IVFG+D+A G     P E+ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

[Close]

BLAST of Lcy04g004960 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-46
Identity = 93/155 (60.00%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRC 60
           MAS  SK  KH WT++EDE LV+CL QLV+ G W+VDN TF+ G+L QV KLMKEK+   
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  DIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHAR 120
           +IQVTP LE  V ILK+QY  I EMMGP CSGF WN ERKCI+AEKSV +DWV+ H +AR
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNAR 205

Query: 121 GMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT 156
            + NK F YF DL IVFG+D+A G     P E+ +
Sbjct: 206 YLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

[Close]

BLAST of Lcy04g004960 vs. NCBI nr
Match: XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])

HSP 1 Score: 194.9 bits (494), Expect = 5.6e-46
Identity = 81/154 (52.60%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 6   SKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVT 65
           +  RKH WT++ED  LV+CL  +  +G WK DN TF+ G+LQQ+ K+M EK+P+C ++  
Sbjct: 50  ANVRKHQWTTLEDSKLVECLLDMANSGKWKADNGTFKPGYLQQLEKMMNEKIPQCGLKAQ 109

Query: 66  PTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNK 125
           P ++ RV ILK+QY AI EM+GP  SGFGWND+ KC+  EK VFD+WV+ HP A+G+RNK
Sbjct: 110 PHIDSRVKILKKQYHAISEMLGPAGSGFGWNDKDKCVVVEKDVFDEWVKSHPSAKGLRNK 169

Query: 126 SFSYFDDLVIVFGKDKANGEGALIPKEVATDLDK 160
            F Y D+L +VFG D+ANG+GA+   ++  D+DK
Sbjct: 170 PFPYHDELGLVFGNDRANGQGAMGLTDMVDDIDK 203

[Close]

BLAST of Lcy04g004960 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12
Identity = 44/157 (28.03%), Postives = 77/157 (49.04%), Query Frame = 0


Query: 1   MASSTSKARK----HIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEK 60
           M  S  K RK    + W+  E ++LVQ L + +    W+  N T         L +  + 
Sbjct: 1   MGDSQPKKRKKGDYNPWSPEETKLLVQLLVEGIN-NNWRDSNGTISK------LTVETKF 60

Query: 61  LPRCDIQVTPTLEY-----RVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDD 120
           +P  + +   +  Y     R+  LK QY + +++     SGFGW+   K   A   V+ D
Sbjct: 61  MPEINKEFCRSKNYNHYLSRMKYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSD 120

Query: 121 WVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGAL 149
           +++ HP+ + +R  +F +FD+L I+FG+  A G+ A+
Sbjct: 121 YLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAI 149

[Close]

BLAST of Lcy04g004960 vs. TAIR 10
Match: AT2G29880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 260 Blast hits to 212 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 240; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 40/150 (26.67%), Postives = 66/150 (44.00%), Query Frame = 0


Query: 2   ASSTSKARKH----IWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKL 61
           A  TSK +K      W+  E   L   L   ++  GW+  N T     +++ +  +  K 
Sbjct: 7   AGETSKKKKKGPYMSWSDQECYELTAILVDAIKR-GWRDKNGTISKTTVERKILPLLNKK 66

Query: 62  PRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHP 121
            +C+   T  L  R+  +K++Y     +     SGFGW+   K   A   V+  ++  HP
Sbjct: 67  FKCNKTYTNYLS-RMKSMKKEYSVYAALFW-FSSGFGWDPITKQFTAPDDVWAAYLMGHP 126

Query: 122 HARGMRNKSFSYFDDLVIVFGKDKANGEGA 148
           +   MR  +F  F+DL ++F    A G  A
Sbjct: 127 NHHHMRTSTFEDFEDLQLIFESAIAKGNNA 153

[Close]

BLAST of Lcy04g004960 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07
Identity = 32/143 (22.38%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 1   MASSTSKAR-KHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPR 60
           M+S     R + +WT   D+  ++ + + V+ G  + ++  F     ++  K M      
Sbjct: 1   MSSRNGNERLRTVWTPEMDQYFIELMVEQVRKGN-RFEDHLFS----KRAWKFMS----- 60

Query: 61  CDIQVTPTLEYRVTILKRQYGAIVEMMGPTCS-----GFGWNDERKCIKAEKSVFDDWVR 120
           C         Y   +LK ++  +  +     +     GF W+D R+ + A+  V+D++++
Sbjct: 61  CSFTAKFKFLYGKDVLKNRHKTLRNLFKSVNNLLIEDGFSWDDTRQMVVADNCVWDEYLK 120

Query: 121 VHPHARGMRNKSFSYFDDLVIVF 138
           +HP +R  R KS   + DL +V+
Sbjct: 121 IHPDSRSFRIKSIPCYKDLCLVY 133

[Close]

BLAST of Lcy04g004960 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07
Identity = 32/143 (22.38%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 1   MASSTSKAR-KHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPR 60
           M+S     R + +WT   D+  ++ + + V+ G  + ++  F     ++  K M      
Sbjct: 1   MSSRNGNERLRTVWTPEMDQYFIELMVEQVRKGN-RFEDHLFS----KRAWKFMS----- 60

Query: 61  CDIQVTPTLEYRVTILKRQYGAIVEMMGPTCS-----GFGWNDERKCIKAEKSVFDDWVR 120
           C         Y   +LK ++  +  +     +     GF W+D R+ + A+  V+D++++
Sbjct: 61  CSFTAKFKFLYGKDVLKNRHKTLRNLFKSVNNLLIEDGFSWDDTRQMVVADNCVWDEYLK 120

Query: 121 VHPHARGMRNKSFSYFDDLVIVF 138
           +HP +R  R KS   + DL +V+
Sbjct: 121 IHPDSRSFRIKSIPCYKDLCLVY 133

[Close]

BLAST of Lcy04g004960 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 5.1e-05
Identity = 19/53 (35.85%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 92  GFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG 145
           GF W++ R  I A+ +V+D +++ HP AR  R KS   ++DL  +F      G
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQG 297

The following BLAST results are available for this feature:

BLAST of Lcy04g004960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82368	1.4e-07	26.67	Uncharacterized protein At2g29880 OS=Arabidopsis thaliana OX=3702 GN=At2g29880 P...	[more]

BLAST of Lcy04g004960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BC95	8.2e-51	65.97	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	8.2e-51	65.97	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]
A0A5A7SW62	2.1e-46	60.00	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DTL0	2.1e-46	60.00	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DBP2	1.5e-44	54.48	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy04g004960 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96933.1	1.7e-50	65.97	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	1.7e-50	65.97	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
KAA0033487.1	4.3e-46	60.00	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]
TYK26842.1	4.3e-46	60.00	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
XP_024022021.1	5.6e-46	52.60	uncharacterized protein LOC112091787 [Morus notabilis]	[more]

BLAST of Lcy04g004960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	5.7e-12	28.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G29880.1	1.0e-08	26.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	1.1e-07	22.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	1.1e-07	22.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	5.1e-05	35.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 13..110 e-value: 2.4E-8 score: 34.9
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..160
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g004960.1	Lcy04g004960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane