Lcy04g004830 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g004830
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr04: 31853442 .. 31854175 (+)
RNA-Seq Expression	Lcy04g004830
Synteny	Lcy04g004830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGCGATGTTCATGCACTTCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACTGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCGGAATCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATACGTTTGTACACATCGTGAAGATTTTACAACGTCCTTCTGACATCTGTAATGCGATGTGGAAACAGAATTGTTTAGGTGCATTGGATGGTACGTACGTAAAGGTTCATGTTAGTGCGGCTGATCGACCAAGGTATAGGACGCGTAAGGGTGAGATTGCAACCAATGTTTTGGGCGTTGTGTCGCCAAAAGGTGAATTCATTTTTGTTATGCCAAGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGATGCAATATCACGCCCCAATGGACTACATCTGTGATGCTGGGTACCCCAACGCAAAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGCAATCCACCTACTACACCAAGGGAGTTCTTCAACATGAAGCATTCTTCTGCACATAATGTTATCGAGAGAGCATTCGGTGCTCTGAAAGGACGGTGGGGATACTTCGGGGGAAGTCATACTACCCTGCTCGAACCCAGTGTCGAATCATAA

mRNA sequence

ATGGTCGCGATGTTCATGCACTTCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACTGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCGGAATCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGAATTGTTTAGGTGCATTGGATGGTACGTACGTAAAGGTTCATGTTAGTGCGGCTGATCGACCAAGGTATAGGACGCGTAAGGGTGAGATTGCAACCAATGTTTTGGGCGTTGTGTCGCCAAAAGAGATGCAATATCACGCCCCAATGGACTACATCTGTGATGCTGGGTACCCCAACGCAAAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGCAATCCACCTACTACACCAAGGGAGTTCTTCAACATGAAGCATTCTTCTGCACATAATGTTATCGAGAGAGCATTCGGTGCTCTGAAAGGACGGTGGGGATACTTCGGGGGAAGTCATACTACCCTGCTCGAACCCAGTGTCGAATCATAA

Coding sequence (CDS)

ATGGTCGCGATGTTCATGCACTTCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACTGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCGGAATCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGAATTGTTTAGGTGCATTGGATGGTACGTACGTAAAGGTTCATGTTAGTGCGGCTGATCGACCAAGGTATAGGACGCGTAAGGGTGAGATTGCAACCAATGTTTTGGGCGTTGTGTCGCCAAAAGAGATGCAATATCACGCCCCAATGGACTACATCTGTGATGCTGGGTACCCCAACGCAAAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGCAATCCACCTACTACACCAAGGGAGTTCTTCAACATGAAGCATTCTTCTGCACATAATGTTATCGAGAGAGCATTCGGTGCTCTGAAAGGACGGTGGGGATACTTCGGGGGAAGTCATACTACCCTGCTCGAACCCAGTGTCGAATCATAA

Protein sequence

MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPKEMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERAFGALKGRWGYFGGSHTTLLEPSVES

Homology

[Close]

BLAST of Lcy04g004830 vs. ExPASy TrEMBL
Match: A0A1S3C1U8 (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.2e-71
Identity = 136/213 (63.85%), Postives = 152/213 (71.36%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H +AHDVKNR+I+R+F RSGETVSRHFN  L A  RL+D LLKKP+ +T SC D
Sbjct: 30  MVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNIVLLAGFRLHDELLKKPQPVTNSCTD 89

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWKWFENCLGALDGTY+KV+VSA DRPRYRTRKGE+ATNVLG    K            
Sbjct: 90  PRWKWFENCLGALDGTYIKVNVSATDRPRYRTRKGEVATNVLGACDTKGDFVFVLFGWEG 149

Query: 121 ----------EMQYHAPMD------YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                      +  H  +       Y+CDAGYPNA+GFLAPYRGERYHL+EWRG  N PT
Sbjct: 150 SAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWRGESNAPT 209

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGG 186
           T REFFNMKHSSA NVIERAFG LKGRW    G
Sbjct: 210 TAREFFNMKHSSARNVIERAFGLLKGRWAILRG 242

[Close]

BLAST of Lcy04g004830 vs. ExPASy TrEMBL
Match: A0A5A7TMY2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00200 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.3e-68
Identity = 131/220 (59.55%), Postives = 151/220 (68.64%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCND 128

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATNVLGV   K            
Sbjct: 129 QRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 188

Query: 121 ----------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                            +Q      Y+CDAGYPNA+GFLAPY+G+RYHL EWRG  N PT
Sbjct: 189 SAADSRILCDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPT 248

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGGSHTTLLE 193
             +E+FNMKHSSA NVIERAFG LKGRW    G     LE
Sbjct: 249 NAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPLE 288

[Close]

BLAST of Lcy04g004830 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.9e-68
Identity = 130/213 (61.03%), Postives = 149/213 (69.95%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCND 128

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATNVLGV   K            
Sbjct: 129 QRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 188

Query: 121 ----------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                            +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT
Sbjct: 189 SAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPT 248

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGG 186
             +E+FNMKHSSA NVIERAFG LKGRW    G
Sbjct: 249 NAKEYFNMKHSSARNVIERAFGVLKGRWAILRG 281

[Close]

BLAST of Lcy04g004830 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.9e-68
Identity = 130/213 (61.03%), Postives = 149/213 (69.95%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCND 128

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATNVLGV   K            
Sbjct: 129 QRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 188

Query: 121 ----------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                            +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT
Sbjct: 189 SAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPT 248

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGG 186
             +E+FNMKHSSA NVIERAFG LKGRW    G
Sbjct: 249 NAKEYFNMKHSSARNVIERAFGVLKGRWAILRG 281

[Close]

BLAST of Lcy04g004830 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.9e-68
Identity = 130/213 (61.03%), Postives = 148/213 (69.48%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H  AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D
Sbjct: 69  MVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCND 128

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATNVLGV   K            
Sbjct: 129 QRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKG 188

Query: 121 ----------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                            +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT
Sbjct: 189 SAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPT 248

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGG 186
             +E+FNMKHSSA NVIERAFG LKGRW    G
Sbjct: 249 NAKEYFNMKHSSARNVIERAFGVLKGRWAILRG 281

[Close]

BLAST of Lcy04g004830 vs. NCBI nr
Match: XP_008455792.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 4.5e-71
Identity = 136/213 (63.85%), Postives = 152/213 (71.36%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H +AHDVKNR+I+R+F RSGETVSRHFN  L A  RL+D LLKKP+ +T SC D
Sbjct: 30  MVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNIVLLAGFRLHDELLKKPQPVTNSCTD 89

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWKWFENCLGALDGTY+KV+VSA DRPRYRTRKGE+ATNVLG    K            
Sbjct: 90  PRWKWFENCLGALDGTYIKVNVSATDRPRYRTRKGEVATNVLGACDTKGDFVFVLFGWEG 149

Query: 121 ----------EMQYHAPMD------YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                      +  H  +       Y+CDAGYPNA+GFLAPYRGERYHL+EWRG  N PT
Sbjct: 150 SAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWRGESNAPT 209

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGG 186
           T REFFNMKHSSA NVIERAFG LKGRW    G
Sbjct: 210 TAREFFNMKHSSARNVIERAFGLLKGRWAILRG 242

[Close]

BLAST of Lcy04g004830 vs. NCBI nr
Match: KAA0043157.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 4.7e-68
Identity = 131/220 (59.55%), Postives = 151/220 (68.64%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCND 128

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATNVLGV   K            
Sbjct: 129 QRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 188

Query: 121 ----------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                            +Q      Y+CDAGYPNA+GFLAPY+G+RYHL EWRG  N PT
Sbjct: 189 SAADSRILCDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPT 248

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGGSHTTLLE 193
             +E+FNMKHSSA NVIERAFG LKGRW    G     LE
Sbjct: 249 NAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPLE 288

[Close]

BLAST of Lcy04g004830 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 6.1e-68
Identity = 130/213 (61.03%), Postives = 149/213 (69.95%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCND 128

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATNVLGV   K            
Sbjct: 129 QRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 188

Query: 121 ----------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                            +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT
Sbjct: 189 SAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPT 248

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGG 186
             +E+FNMKHSSA NVIERAFG LKGRW    G
Sbjct: 249 NAKEYFNMKHSSARNVIERAFGVLKGRWAILRG 281

[Close]

BLAST of Lcy04g004830 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 6.1e-68
Identity = 130/213 (61.03%), Postives = 149/213 (69.95%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D
Sbjct: 69  MVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCND 128

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATNVLGV   K            
Sbjct: 129 QRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 188

Query: 121 ----------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                            +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT
Sbjct: 189 SAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPT 248

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGG 186
             +E+FNMKHSSA NVIERAFG LKGRW    G
Sbjct: 249 NAKEYFNMKHSSARNVIERAFGVLKGRWAILRG 281

[Close]

BLAST of Lcy04g004830 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 267.7 bits (683), Expect = 8.0e-68
Identity = 130/213 (61.03%), Postives = 148/213 (69.48%), Query Frame = 0


Query: 1   MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQD 60
           MVAMF+H  AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D
Sbjct: 69  MVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCND 128

Query: 61  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK------------ 120
            RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATNVLGV   K            
Sbjct: 129 QRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWKG 188

Query: 121 ----------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 180
                            +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT
Sbjct: 189 SAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEWRGAANAPT 248

Query: 181 TPREFFNMKHSSAHNVIERAFGALKGRWGYFGG 186
             +E+FNMKHSSA NVIERAFG LKGRW    G
Sbjct: 249 NAKEYFNMKHSSARNVIERAFGVLKGRWAILRG 281

[Close]

BLAST of Lcy04g004830 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-19
Identity = 60/208 (28.85%), Postives = 90/208 (43.27%), Query Frame = 0


Query: 2   VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRL-YDVLLKKPESITASCQD 61
           +A+F+  + H+++ R ++  F  SGET+SRHFN  L+AV+ +  D       S T    D
Sbjct: 78  LAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDD 137

Query: 62  GRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVS-------------- 121
               +F++C+G +D  ++ V V   ++  +R   G +  NVL   S              
Sbjct: 138 ---PYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEG 197

Query: 122 --------------PKEMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPT 181
                           ++Q      YI D  YPN  GF+APY G            N   
Sbjct: 198 SASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGV---------STNSRE 257

[Close]

BLAST of Lcy04g004830 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-16
Identity = 62/221 (28.05%), Postives = 92/221 (41.63%), Query Frame = 0


Query: 2   VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRL---------YDVLLKKPE 61
           VAMF+    H+   R +  +F R+ ETV R F   L+A   L            L + PE
Sbjct: 102 VAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPE 161

Query: 62  SITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVVSPK---- 121
            +        W +F   +GA+DGT+V V V    +  Y  R    + N++ +   K    
Sbjct: 162 RL--QVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFT 221

Query: 122 ----------------------EMQYHAPMD---YICDAGYPNAKGFLAPYRGE-----R 180
                                 + ++  P     Y+ D+GYPN +G LAPYR       R
Sbjct: 222 YIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVR 281

[Close]

BLAST of Lcy04g004830 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 118 YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERAFGALK 177
           Y+ D G+ N   FLAP+RG RYHL E+ G    P TP E FN++H S  NVIER FG  K
Sbjct: 50  YLVDCGFANRLNFLAPFRGVRYHLQEFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFK 109

Query: 178 GRWGYF 184
            R+  F
Sbjct: 110 SRFAIF 115

[Close]

BLAST of Lcy04g004830 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 2.1e-05
Identity = 42/156 (26.92%), Postives = 64/156 (41.03%), Query Frame = 0


Query: 2   VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLK-----KPESITA 61
           VA+F+   A +   R I  +F  + ET+ R F+  L A+ RL    ++     +  +I+ 
Sbjct: 60  VAIFLIICASNDTQRDIALRFGHAQETIWRKFHDVLKAMERLAVEYIRPRKVEELRAISN 119

Query: 62  SCQDGR--WKWFENCLGA----------LDGTYVKVHVSAADRPRYRTRKGEIATNVLGV 121
             QD    W +  + LG           LD  +    V  A               VL  
Sbjct: 120 RLQDDTRYWPFLMDLLGIASFNVLAICDLDMLFTYCFVGMAGSTH--------DARVLSA 179

Query: 122 VSPKEMQYHAPMD---YICDAGYPNAKGFLAPYRGE 138
               +  +H P D   Y+ D+GY N +G+LAPYR E
Sbjct: 180 AISDDPLFHVPPDSKYYLVDSGYANKRGYLAPYRRE 207

[Close]

BLAST of Lcy04g004830 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 3.9e-04
Identity = 16/40 (40.00%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 63  WKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVL 103
           + +F++C+GA+D T++   VS    P +R RKG+I+ N+L
Sbjct: 19  YPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNML 58

The following BLAST results are available for this feature:

BLAST of Lcy04g004830 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g004830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1U8	2.2e-71	63.85	putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1	[more]
A0A5A7TMY2	2.3e-68	59.55	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7X8	2.9e-68	61.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UST8	2.9e-68	61.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SYW1	3.9e-68	61.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy04g004830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455792.1	4.5e-71	63.85	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
KAA0043157.1	4.7e-68	59.55	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	6.1e-68	61.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031556.1	6.1e-68	61.03	retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon...	[more]
KAA0036474.1	8.0e-68	61.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy04g004830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.5e-19	28.85	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	1.5e-16	28.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	1.4e-14	51.52	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	2.1e-05	26.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	3.9e-04	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 119..185 e-value: 1.5E-6 score: 28.0
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 118..184 coord: 2..113
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 118..184
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g004830.1	Lcy04g004830.1	mRNA