Lcy04g004720 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g004720
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr04: 31414251 .. 31414991 (-)
RNA-Seq Expression	Lcy04g004720
Synteny	Lcy04g004720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAACTTCGTCACACCAGAACGGAAGATCTGAGGGCATTATAGTGTATGTATATATAAGCTATTCTGGTATGGAATGCTAGTTCGATAGAAAAGAAGGAATAGTGTGTTTTTTCTTTTATTGATTGGGGTTTTAGGATCGGAAAAAGATTATATACAAATTTTTGAAAGTGAAAAATGGCAAGGCCAATTCTTGGCACCACCAACGGCGGTGGCTTACAAGCAGATGTCAGCTTGATCAGCTCCAGCGGATTATTTTTGCTTTCAATCATCATTCTATCCATTTCTCTCATATCAATGATCATATTTGCTTGCGGTCATAACTCTCATCATTCTCCAAAGAAAAGAAAACAGCGACCCCACGGCGGTGGCAGTGGCGACTGTGGATGTCTCTGTGGTGGAGGTGATGGTGGAGGTGATGGTGGAGGCGGAGGACATGACGGAGGTGGCGGTGGAGGCGGAGGATGTGGTGGCGGCGGCGGCGGTGGAGGTGGAGGATGTGGTGGCGGCGGTGGAGGATGATGTTAATGACATGCTTATTTGGATCCATATGCTAGTTTTATAAAACAGTCTACACGACAATTTTCATTCATTCGAAAGTAATGCTCGTTTTATATGCGTCTATTTATGATGTTTCTTTGCTCTACCAATCTTATGTACCATGTTAATGTTAATAAATGAGTGTTTGGACAACACATGTGATATATATATAGTTTGAGAATGTTAATTAAAGATTGTGAT

mRNA sequence

GTGAAACTTCGTCACACCAGAACGGAAGATCTGAGGGCATTATAGTGTATGTATATATAAGCTATTCTGGTATGGAATGCTAGTTCGATAGAAAAGAAGGAATAGTGTGTTTTTTCTTTTATTGATTGGGGTTTTAGGATCGGAAAAAGATTATATACAAATTTTTGAAAGTGAAAAATGGCAAGGCCAATTCTTGGCACCACCAACGGCGGTGGCTTACAAGCAGATGTCAGCTTGATCAGCTCCAGCGGATTATTTTTGCTTTCAATCATCATTCTATCCATTTCTCTCATATCAATGATCATATTTGCTTGCGGTCATAACTCTCATCATTCTCCAAAGAAAAGAAAACAGCGACCCCACGGCGGTGGCAGTGGCGACTGTGGATGTCTCTGTGGTGGAGGTGATGGTGGAGGTGATGGTGGAGGCGGAGGACATGACGGAGGTGGCGGTGGAGGCGGAGGATGTGGTGGCGGCGGCGGCGGTGGAGGTGGAGGATGTGGTGGCGGCGGTGGAGGATGATGTTAATGACATGCTTATTTGGATCCATATGCTAGTTTTATAAAACAGTCTACACGACAATTTTCATTCATTCGAAAGTAATGCTCGTTTTATATGCGTCTATTTATGATGTTTCTTTGCTCTACCAATCTTATGTACCATGTTAATGTTAATAAATGAGTGTTTGGACAACACATGTGATATATATATAGTTTGAGAATGTTAATTAAAGATTGTGAT

Coding sequence (CDS)

ATGGCAAGGCCAATTCTTGGCACCACCAACGGCGGTGGCTTACAAGCAGATGTCAGCTTGATCAGCTCCAGCGGATTATTTTTGCTTTCAATCATCATTCTATCCATTTCTCTCATATCAATGATCATATTTGCTTGCGGTCATAACTCTCATCATTCTCCAAAGAAAAGAAAACAGCGACCCCACGGCGGTGGCAGTGGCGACTGTGGATGTCTCTGTGGTGGAGGTGATGGTGGAGGTGATGGTGGAGGCGGAGGACATGACGGAGGTGGCGGTGGAGGCGGAGGATGTGGTGGCGGCGGCGGCGGTGGAGGTGGAGGATGTGGTGGCGGCGGTGGAGGATGA

Protein sequence

MARPILGTTNGGGLQADVSLISSSGLFLLSIIILSISLISMIIFACGHNSHHSPKKRKQRPHGGGSGDCGCLCGGGDGGGDGGGGGHDGGGGGGGGCGGGGGGGGGGCGGGGGG

Homology

[Close]

BLAST of Lcy04g004720 vs. NCBI nr
Match: DAD43551.1 (TPA_asm: hypothetical protein HUJ06_001781 [Nelumbo nucifera])

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-05
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 1   MARPILGTTNGGGLQADVSLISSSGLFLLSIIILSISLISMIIFACGHNSHHSPKKRKQR 60
           MAR ++   +      DV + +S GLFLL ++++S+S+ISM+IFACG      P++ ++R
Sbjct: 1   MARFVVAIGDSAANGGDV-VQASGGLFLLCVVVVSLSVISMVIFACGDK---EPRRGRRR 60

Query: 61  PHGGGSGDCGCLCGGGDGGGDGGGGGHDGGGGGGGGCGGGGGG 104
            HGGG G  GC C GGDGGGDGGG   DGGGGGGGGCGGGGGG
Sbjct: 61  KHGGGGGGDGCCC-GGDGGGDGGG---DGGGGGGGGCGGGGGG 95

The following BLAST results are available for this feature:

BLAST of Lcy04g004720 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g004720 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g004720 vs. NCBI nr


Match Name	E-value	Identity	Description
DAD43551.1	4.2e-05	55.34	TPA_asm: hypothetical protein HUJ06_001781 [Nelumbo nucifera]	[more]

BLAST of Lcy04g004720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35420:SF5	SUBFAMILY NOT NAMED	coord: 1..97
None	No IPR available	PANTHER	PTHR35420	OS02G0198500 PROTEIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g004720.1	Lcy04g004720.1	mRNA