Lcy04g004400 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g004400
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
LocationChr04: 29156982 .. 29157528 (-)
RNA-Seq ExpressionLcy04g004400
SyntenyLcy04g004400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGCTTTCTTCTTCCTACATCGCCATCATTGTTCTTATCTTTGCAGGTTCTCTTCTACAAATTATATGTTATTATTATGAGTTGTAGAAAAATATATTCAACATGTGATATTTCCATGTATGATTTCAAGTGTTTGATGTCGCTACATGGCTCGGTTAATTGATATCAATATTGATTCATATGGTTGAGTTAAATCTCCCGAAACATCTTTCGATTGACTAAATGTTAATAGTTTTCTTATGCCCATTTGAAGAAAAGTATGTCATGTAGAAAACTATATCAATGTTAAAAATATCTTATACATATCGATTAATAATATTTTTATGTTTATTGTTGTATAGTTGCAACGCTTTTGGTGCCTCAACGTGCCTCAGCTGTTCAAAGATGTCAAGAAAGATTGTACAGTAGTGGATGCACACTTAGTGACTGTGGGGAGAAATGTTGGGTGAAGCACCATGATGCCTCACATGAGTGTGTTCCTACTAATCCTGATCAGACTATTTATGCTTGTTATTGTTTCTTTGATTGCGGTCAAAATTGA

mRNA sequence

ATGGCAAAGCTTTCTTCTTCCTACATCGCCATCATTGTTCTTATCTTTGCAGTTGCAACGCTTTTGGTGCCTCAACGTGCCTCAGCTGTTCAAAGATGTCAAGAAAGATTGTACAGTAGTGGATGCACACTTAGTGACTGTGGGGAGAAATGTTGGGTGAAGCACCATGATGCCTCACATGAGTGTGTTCCTACTAATCCTGATCAGACTATTTATGCTTGTTATTGTTTCTTTGATTGCGGTCAAAATTGA

Coding sequence (CDS)

ATGGCAAAGCTTTCTTCTTCCTACATCGCCATCATTGTTCTTATCTTTGCAGTTGCAACGCTTTTGGTGCCTCAACGTGCCTCAGCTGTTCAAAGATGTCAAGAAAGATTGTACAGTAGTGGATGCACACTTAGTGACTGTGGGGAGAAATGTTGGGTGAAGCACCATGATGCCTCACATGAGTGTGTTCCTACTAATCCTGATCAGACTATTTATGCTTGTTATTGTTTCTTTGATTGCGGTCAAAATTGA

Protein sequence

MAKLSSSYIAIIVLIFAVATLLVPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASHECVPTNPDQTIYACYCFFDCGQN
Homology
BLAST of Lcy04g004400 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.1e-28
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1  MAKLSSSYIAIIVLIFAVATLLVPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASH 60
          M KL SS+I  I L  AVA +LVPQ A AV+RCQ++LY +GCTL+DCG+KCW KHHDASH
Sbjct: 1  MTKLYSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASH 60

Query: 61 ECVPTNPDQTIYACYCFFDCGQN 84
          +C+PT+P QTIYACYCF++CGQN
Sbjct: 61 QCIPTDPGQTIYACYCFYNCGQN 83

BLAST of Lcy04g004400 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.1e-24
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 4  LSSSYIAIIVLIFAVATLLVPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASHECV 63
          + SS I    LIFAVA LL  Q  SA QRCQ+ LY++GC L+DCG+KCW KHH  SH+C+
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 64 PTNPDQTIYACYCFFDCG 82
          PTNP QTIYACYCFFDCG
Sbjct: 61 PTNPSQTIYACYCFFDCG 78

BLAST of Lcy04g004400 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.3e-24
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 1  MAKLSSSYIAIIVLIFAVATLLVPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASH 60
          M KL SS+I  IVLI AVA + +PQ A A  RCQ+ LY+SGCTL+DCG+KCW KHH+AS 
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASR 60

Query: 61 ECVPTNPDQTIYACYCFFDCG 82
          +C+PT+PDQTIYACYCF+ CG
Sbjct: 61 QCIPTDPDQTIYACYCFYTCG 80

BLAST of Lcy04g004400 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.5e-16
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MAKLSSSYIAIIVLIFAVATLLVPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASH 60
          MA LSS  +AII++IFAV+ +LVPQ  SA+ +CQ+RLY  GC   +CG+KC   HH  + 
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSAL-KCQDRLYVGGCIQHECGQKCSQLHHGGTS 77

Query: 61 ECVPTNPDQTIYACYCFFDCGQN 84
          +C+ T+P  T YACYCF++C +N
Sbjct: 78 KCISTDPTFTKYACYCFYNCPEN 99

BLAST of Lcy04g004400 vs. ExPASy TrEMBL
Match: A0A6J5VH03 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 23 VPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASHECVPTNPDQTIYACYCFFDC 81
          VPQ A A +RC+E+LYSSGCTL DCG+KCW KHHDA H CV  N  Q  YACYC F+C
Sbjct: 37 VPQ-AYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYACYCMFNC 92

BLAST of Lcy04g004400 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-27
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1  MAKLSSSYIAIIVLIFAVATLLVPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASH 60
          M KL SS+I  I L  AVA +LVPQ A AV+RCQ++LY +GCTL+DCG+KCW KHHDASH
Sbjct: 1  MTKLYSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASH 60

Query: 61 ECVPTNPDQTIYACYCFFDCGQN 84
          +C+PT+P QTIYACYCF++CGQN
Sbjct: 61 QCIPTDPGQTIYACYCFYNCGQN 83

BLAST of Lcy04g004400 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 1  MAKLSSSYIAIIVLIFAVATLLVPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASH 60
          M KL SS+I  IVLI AVA + +PQ A A  RCQ+ LY+SGCTL+DCG+KCW KHH+AS 
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASR 60

Query: 61 ECVPTNPDQTIYACYCFFDCG 82
          +C+PT+PDQTIYACYCF+ CG
Sbjct: 61 QCIPTDPDQTIYACYCFYTCG 80

BLAST of Lcy04g004400 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 8.9e-21
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 19 ATLLVPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASHECVPTNPDQTIYACYCFF 78
          A LL  Q  SA QRCQ+ LY++GC L+DCG+KCW KHH  SH+C+PTNP QTIYACYCFF
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

Query: 79 DCG 82
          DCG
Sbjct: 61 DCG 63

BLAST of Lcy04g004400 vs. NCBI nr
Match: CAB4286917.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-13
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 23 VPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASHECVPTNPDQTIYACYCFFDC 81
          VPQ A A +RC+E+LYSSGCTL DCG+KCW KHHDA H CV  N  Q  YACYC F+C
Sbjct: 37 VPQ-AYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYACYCMFNC 92

BLAST of Lcy04g004400 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-13
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 23  VPQRASAVQRCQERLYSSGCTLSDCGEKCWVKHHDASHECVPTNPDQTIYACYCFFDC 81
           VPQ A A +RC E+LY+SGCTLSDCG+KCW KHHD  ++C+  N  QT YACYC F+C
Sbjct: 57  VPQ-AYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7THQ78.1e-2868.67S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0L2R37.1e-2466.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A0A0LVZ59.3e-2466.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A0A0KYP75.5e-1651.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1[more]
A0A6J5VH031.5e-1367.24Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 S... [more]
Match NameE-valueIdentityDescription
KAA0042348.11.7e-2768.67S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KGN64987.11.9e-2366.67hypothetical protein Csa_022748 [Cucumis sativus][more]
KAE8649772.18.9e-2169.84hypothetical protein Csa_012405, partial [Cucumis sativus][more]
CAB4286917.13.1e-1367.24unnamed protein product [Prunus armeniaca][more]
BBH07492.15.3e-1363.79hypothetical protein Prudu_019451 [Prunus dulcis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 31..80
e-value: 4.0E-5
score: 24.0
IPR010851Defensin-like proteinPANTHERPTHR33830DEFENSIN-LIKE PROTEIN 184-RELATEDcoord: 1..80
NoneNo IPR availablePANTHERPTHR33830:SF21DEFENSIN-LIKE PROTEIN 140-RELATEDcoord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g004400.1Lcy04g004400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0031640 killing of cells of other organism