Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACAGCGGGCGAGGCTTCCAGCGAGCAACCGAATCAAGCTCTGGAAGTCCGATTGAGCTATTTCAGGCGTCAGATCTCTAGATCTCCGTCGGCCACGAATCTGCAAGAAATCGTGGAAGAACTTACATCGTCGAATGCCATACAACTCTCGAATACTGTGATCCCTCTCCCTCTGCCGGAACCGGGAGAAAATTTGGCGTTCTTTCAAATGCTCATCATTCATTTGCTCTTCTCCATCAACATCCGACCCGACGCCTGCACCAGAATCGCTGGGGAGATCGAATCGTTCGTCACCGAACTGGTCGGTGGAAACAGAGAGATGAACTTCCACATCGTCGCGGACATCGATTTCGTCCAAGTCTTGGGCATGGAAAGCAACGAGGAGATGGTGGAAATTGGAAGAGAATGGAGAAGAATTGGGAGATTGCAGTATCTGTTTGGATGA
mRNA sequence
ATGTCCACAGCGGGCGAGGCTTCCAGCGAGCAACCGAATCAAGCTCTGGAAGTCCGATTGAGCTATTTCAGGCGTCAGATCTCTAGATCTCCGTCGGCCACGAATCTGCAAGAAATCGTGGAAGAACTTACATCGTCGAATGCCATACAACTCTCGAATACTGTGATCCCTCTCCCTCTGCCGGAACCGGGAGAAAATTTGGCGTTCTTTCAAATGCTCATCATTCATTTGCTCTTCTCCATCAACATCCGACCCGACGCCTGCACCAGAATCGCTGGGGAGATCGAATCGTTCGTCACCGAACTGGTCGGTGGAAACAGAGAGATGAACTTCCACATCGTCGCGGACATCGATTTCGTCCAAGTCTTGGGCATGGAAAGCAACGAGGAGATGGTGGAAATTGGAAGAGAATGGAGAAGAATTGGGAGATTGCAGTATCTGTTTGGATGA
Coding sequence (CDS)
ATGTCCACAGCGGGCGAGGCTTCCAGCGAGCAACCGAATCAAGCTCTGGAAGTCCGATTGAGCTATTTCAGGCGTCAGATCTCTAGATCTCCGTCGGCCACGAATCTGCAAGAAATCGTGGAAGAACTTACATCGTCGAATGCCATACAACTCTCGAATACTGTGATCCCTCTCCCTCTGCCGGAACCGGGAGAAAATTTGGCGTTCTTTCAAATGCTCATCATTCATTTGCTCTTCTCCATCAACATCCGACCCGACGCCTGCACCAGAATCGCTGGGGAGATCGAATCGTTCGTCACCGAACTGGTCGGTGGAAACAGAGAGATGAACTTCCACATCGTCGCGGACATCGATTTCGTCCAAGTCTTGGGCATGGAAAGCAACGAGGAGATGGTGGAAATTGGAAGAGAATGGAGAAGAATTGGGAGATTGCAGTATCTGTTTGGATGA
Protein sequence
MSTAGEASSEQPNQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMVEIGREWRRIGRLQYLFG
Homology
BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match:
A0A6J1DBR5 (E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111019547 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 4.7e-10
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 0
Query: 7 ASSEQPNQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGEN 66
+S +QP+Q L+VRL R ISRSP+A L ++ ++N V PLPL
Sbjct: 21 SSGDQPHQVLQVRLRSQSRMISRSPAAI--------LQETSWTPMANAVFPLPL-SALNG 80
Query: 67 LAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNR-EMNFHIVADIDFVQVLGM 126
L F + I LL S+++ AC IA +I SFV EL GGN ++N H+VA +D+++ + +
Sbjct: 81 LLFLEAYIRQLLCSLDLPEGACEVIARKIASFVVELAGGNSDQVNLHVVALVDYIEEMAI 135
Query: 127 ESNE 130
+ E
Sbjct: 141 VAEE 135
BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match:
A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 0
Query: 13 NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
+Q L+VRL Y R ISRSP + +I+EE S+ +++T+ PLPL E E+ F
Sbjct: 20 DQLLQVRLGYSSRLISRSPYSGLPYDILEETPST---LIADTLFPLPLREL-EDPLFCHA 79
Query: 73 LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
++ L+ S+N+ +C IA +I S VT+ + ++ F +VADID++Q+ E + V
Sbjct: 80 YLVELVSSLNLDSISCNPIAQKITSLVTQWAAVDYDLKFQLVADIDYIQMFWREESRGPV 138
Query: 133 EIG 136
G
Sbjct: 140 RRG 138
BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match:
A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 0
Query: 13 NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
N LEVR+S+F + IS SP +I+ + + I N ++ L L + L +
Sbjct: 21 NGILEVRISFFEQMISLSPVTGRPHQILHQ---TPRIPYHNALVYLTLRQLQSPLFY--- 80
Query: 73 LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
I L S+NIRP A +A +I S + ++ N + NFHI+A++DF++V+ +E E+ +
Sbjct: 81 -ITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSM 138
Query: 133 EIGRE 138
G E
Sbjct: 141 GAGAE 138
BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match:
A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 0
Query: 13 NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
+Q L RL Y R ISRSPSA +I+EE S+ +++ + PLPL E E+ F
Sbjct: 20 DQFLRFRLCYSSRLISRSPSAGLPYDILEETPST---PMADALFPLPLREL-EDPLFCHA 79
Query: 73 LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
+I L+ S+N+ +C I +I S VT+ + + F +VADID++Q+ ME V
Sbjct: 80 YLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVADIDYIQMFWMEKRPGSV 138
Query: 133 EIG 136
G
Sbjct: 140 GRG 138
BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match:
A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 0
Query: 13 NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
N LEVR+S+F + IS SP +I+ + + I N ++ L L + L +
Sbjct: 21 NGILEVRISFFEQMISLSPVTGRPHQILHQ---TPRIPYHNALVYLTLRQLQSPLFY--- 80
Query: 73 LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
I L S+NIRP A +A +I S + ++ N + NFHI+A++DF++V+ +E E+ +
Sbjct: 81 -ITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSM 138
Query: 133 EIGRE 138
G E
Sbjct: 141 GAGAE 138
BLAST of Lcy04g004200 vs. NCBI nr
Match:
XP_023518048.1 (uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 7 ASSEQPNQALEVRLSYFRRQISRSP--SATNLQEIVEELTSSNAIQLSNTVIPLPLPEPG 66
AS EQP Q L+++L Y RR IS SP T LQE + I L N + PLPL E
Sbjct: 20 ASGEQPYQVLQLQLHYIRRDISVSPLSGVTYLQE-------TAPILLRNLLFPLPLQELH 79
Query: 67 ENLAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVL- 126
+ + Q+ + LL +N+R AC IA I S+ + GGNRE +FH V D+DF++++
Sbjct: 80 DPV-ILQVYVAQLLSLLNVRSPACEAIAERIVSYTILMAGGNRETSFHTVVDLDFIRLIT 139
Query: 127 GMESNEEMVE 134
ME N + +
Sbjct: 140 WMEENHGLFQ 141
BLAST of Lcy04g004200 vs. NCBI nr
Match:
XP_022151640.1 (E3 ubiquitin-protein ligase RNF181-like [Momordica charantia])
HSP 1 Score: 74.3 bits (181), Expect = 9.8e-10
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 0
Query: 7 ASSEQPNQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGEN 66
+S +QP+Q L+VRL R ISRSP+A L ++ ++N V PLPL
Sbjct: 21 SSGDQPHQVLQVRLRSQSRMISRSPAAI--------LQETSWTPMANAVFPLPL-SALNG 80
Query: 67 LAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNR-EMNFHIVADIDFVQVLGM 126
L F + I LL S+++ AC IA +I SFV EL GGN ++N H+VA +D+++ + +
Sbjct: 81 LLFLEAYIRQLLCSLDLPEGACEVIARKIASFVVELAGGNSDQVNLHVVALVDYIEEMAI 135
Query: 127 ESNE 130
+ E
Sbjct: 141 VAEE 135
BLAST of Lcy04g004200 vs. NCBI nr
Match:
KAG6595648.1 (hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 7 ASSEQPNQALEVRLSYFRRQISRSP--SATNLQEIVEELTSSNAIQLSNTVIPLPLPEPG 66
AS EQP Q L+++L YFRR+IS SP T LQE + I L N + PL L E
Sbjct: 20 ASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQE-------TAPILLRNLLFPLRLQELH 79
Query: 67 ENLAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVL- 126
+ + F Q+ + LL +N+R IA I S+ + GGNRE +FH V ++D+++V+
Sbjct: 80 DPV-FLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHTVLELDYIRVIT 139
Query: 127 GMESNEEMVE 134
ME N + +
Sbjct: 140 WMEENHGLFQ 141
BLAST of Lcy04g004200 vs. NCBI nr
Match:
KAG6595650.1 (hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 72.4 bits (176), Expect = 3.7e-09
Identity = 49/130 (37.69%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 7 ASSEQPNQALEVRLSYFRRQISRSP--SATNLQEIVEELTSSNAIQLSNTVIPLPLPEPG 66
AS EQP Q L+++L YFRR+IS SP T LQE + I L N + PL L E
Sbjct: 20 ASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQE-------TAPILLRNLLFPLRLQELH 79
Query: 67 ENLAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVL- 126
+ + F Q+ + LL +N+R IA I S+ + GGNRE +FH V ++D+++++
Sbjct: 80 DPV-FLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHTVLELDYIRLIT 139
Query: 127 GMESNEEMVE 134
ME N + +
Sbjct: 140 WMEENHGLFQ 141
BLAST of Lcy04g004200 vs. NCBI nr
Match:
KAG6605180.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 69.7 bits (169), Expect = 2.4e-08
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 0
Query: 13 NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
+Q L+VRL Y R ISRSP + +I+EE+ S+ +++T+ PLPL E E+ F
Sbjct: 20 DQLLQVRLGYSSRLISRSPYSGLPYDILEEIPST---PIADTLFPLPLREL-EDPLFCHA 79
Query: 73 LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
++ L+ S+N+ +C IA +I S VT+ + + F +VADID++Q+ E + V
Sbjct: 80 YLVELVSSLNLDSISCNPIAQKITSLVTQWAAVDYDAKFQLVADIDYIQMFWREESRGPV 138
Query: 133 EIG 136
G
Sbjct: 140 RRG 138
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DBR5 | 4.7e-10 | 37.90 | E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111... | [more] |
A0A6J1G7R8 | 1.5e-08 | 35.77 | E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451... | [more] |
A0A5D3E1S5 | 9.9e-08 | 32.80 | E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A6J1L186 | 9.9e-08 | 36.59 | NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4... | [more] |
A0A1S4DUZ4 | 9.9e-08 | 32.80 | E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ... | [more] |
Match Name | E-value | Identity | Description | |
XP_023518048.1 | 1.0e-11 | 40.00 | uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo] | [more] |
XP_022151640.1 | 9.8e-10 | 37.90 | E3 ubiquitin-protein ligase RNF181-like [Momordica charantia] | [more] |
KAG6595648.1 | 1.7e-09 | 38.46 | hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6595650.1 | 3.7e-09 | 37.69 | hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6605180.1 | 2.4e-08 | 35.77 | E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |