Lcy04g004200 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g004200
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionE3 ubiquitin-protein ligase RNF181-like
LocationChr04: 28236874 .. 28237323 (+)
RNA-Seq ExpressionLcy04g004200
SyntenyLcy04g004200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACAGCGGGCGAGGCTTCCAGCGAGCAACCGAATCAAGCTCTGGAAGTCCGATTGAGCTATTTCAGGCGTCAGATCTCTAGATCTCCGTCGGCCACGAATCTGCAAGAAATCGTGGAAGAACTTACATCGTCGAATGCCATACAACTCTCGAATACTGTGATCCCTCTCCCTCTGCCGGAACCGGGAGAAAATTTGGCGTTCTTTCAAATGCTCATCATTCATTTGCTCTTCTCCATCAACATCCGACCCGACGCCTGCACCAGAATCGCTGGGGAGATCGAATCGTTCGTCACCGAACTGGTCGGTGGAAACAGAGAGATGAACTTCCACATCGTCGCGGACATCGATTTCGTCCAAGTCTTGGGCATGGAAAGCAACGAGGAGATGGTGGAAATTGGAAGAGAATGGAGAAGAATTGGGAGATTGCAGTATCTGTTTGGATGA

mRNA sequence

ATGTCCACAGCGGGCGAGGCTTCCAGCGAGCAACCGAATCAAGCTCTGGAAGTCCGATTGAGCTATTTCAGGCGTCAGATCTCTAGATCTCCGTCGGCCACGAATCTGCAAGAAATCGTGGAAGAACTTACATCGTCGAATGCCATACAACTCTCGAATACTGTGATCCCTCTCCCTCTGCCGGAACCGGGAGAAAATTTGGCGTTCTTTCAAATGCTCATCATTCATTTGCTCTTCTCCATCAACATCCGACCCGACGCCTGCACCAGAATCGCTGGGGAGATCGAATCGTTCGTCACCGAACTGGTCGGTGGAAACAGAGAGATGAACTTCCACATCGTCGCGGACATCGATTTCGTCCAAGTCTTGGGCATGGAAAGCAACGAGGAGATGGTGGAAATTGGAAGAGAATGGAGAAGAATTGGGAGATTGCAGTATCTGTTTGGATGA

Coding sequence (CDS)

ATGTCCACAGCGGGCGAGGCTTCCAGCGAGCAACCGAATCAAGCTCTGGAAGTCCGATTGAGCTATTTCAGGCGTCAGATCTCTAGATCTCCGTCGGCCACGAATCTGCAAGAAATCGTGGAAGAACTTACATCGTCGAATGCCATACAACTCTCGAATACTGTGATCCCTCTCCCTCTGCCGGAACCGGGAGAAAATTTGGCGTTCTTTCAAATGCTCATCATTCATTTGCTCTTCTCCATCAACATCCGACCCGACGCCTGCACCAGAATCGCTGGGGAGATCGAATCGTTCGTCACCGAACTGGTCGGTGGAAACAGAGAGATGAACTTCCACATCGTCGCGGACATCGATTTCGTCCAAGTCTTGGGCATGGAAAGCAACGAGGAGATGGTGGAAATTGGAAGAGAATGGAGAAGAATTGGGAGATTGCAGTATCTGTTTGGATGA

Protein sequence

MSTAGEASSEQPNQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMVEIGREWRRIGRLQYLFG
Homology
BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match: A0A6J1DBR5 (E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111019547 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.7e-10
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 7   ASSEQPNQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGEN 66
           +S +QP+Q L+VRL    R ISRSP+A         L  ++   ++N V PLPL      
Sbjct: 21  SSGDQPHQVLQVRLRSQSRMISRSPAAI--------LQETSWTPMANAVFPLPL-SALNG 80

Query: 67  LAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNR-EMNFHIVADIDFVQVLGM 126
           L F +  I  LL S+++   AC  IA +I SFV EL GGN  ++N H+VA +D+++ + +
Sbjct: 81  LLFLEAYIRQLLCSLDLPEGACEVIARKIASFVVELAGGNSDQVNLHVVALVDYIEEMAI 135

Query: 127 ESNE 130
            + E
Sbjct: 141 VAEE 135

BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 0

Query: 13  NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
           +Q L+VRL Y  R ISRSP +    +I+EE  S+    +++T+ PLPL E  E+  F   
Sbjct: 20  DQLLQVRLGYSSRLISRSPYSGLPYDILEETPST---LIADTLFPLPLREL-EDPLFCHA 79

Query: 73  LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
            ++ L+ S+N+   +C  IA +I S VT+    + ++ F +VADID++Q+   E +   V
Sbjct: 80  YLVELVSSLNLDSISCNPIAQKITSLVTQWAAVDYDLKFQLVADIDYIQMFWREESRGPV 138

Query: 133 EIG 136
             G
Sbjct: 140 RRG 138

BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 0

Query: 13  NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
           N  LEVR+S+F + IS SP      +I+ +   +  I   N ++ L L +    L +   
Sbjct: 21  NGILEVRISFFEQMISLSPVTGRPHQILHQ---TPRIPYHNALVYLTLRQLQSPLFY--- 80

Query: 73  LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
            I   L S+NIRP A   +A +I S + ++   N + NFHI+A++DF++V+ +E  E+ +
Sbjct: 81  -ITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSM 138

Query: 133 EIGRE 138
             G E
Sbjct: 141 GAGAE 138

BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 0

Query: 13  NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
           +Q L  RL Y  R ISRSPSA    +I+EE  S+    +++ + PLPL E  E+  F   
Sbjct: 20  DQFLRFRLCYSSRLISRSPSAGLPYDILEETPST---PMADALFPLPLREL-EDPLFCHA 79

Query: 73  LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
            +I L+ S+N+   +C  I  +I S VT+    + +  F +VADID++Q+  ME     V
Sbjct: 80  YLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVADIDYIQMFWMEKRPGSV 138

Query: 133 EIG 136
             G
Sbjct: 140 GRG 138

BLAST of Lcy04g004200 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 0

Query: 13  NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
           N  LEVR+S+F + IS SP      +I+ +   +  I   N ++ L L +    L +   
Sbjct: 21  NGILEVRISFFEQMISLSPVTGRPHQILHQ---TPRIPYHNALVYLTLRQLQSPLFY--- 80

Query: 73  LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
            I   L S+NIRP A   +A +I S + ++   N + NFHI+A++DF++V+ +E  E+ +
Sbjct: 81  -ITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSM 138

Query: 133 EIGRE 138
             G E
Sbjct: 141 GAGAE 138

BLAST of Lcy04g004200 vs. NCBI nr
Match: XP_023518048.1 (uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 7   ASSEQPNQALEVRLSYFRRQISRSP--SATNLQEIVEELTSSNAIQLSNTVIPLPLPEPG 66
           AS EQP Q L+++L Y RR IS SP    T LQE       +  I L N + PLPL E  
Sbjct: 20  ASGEQPYQVLQLQLHYIRRDISVSPLSGVTYLQE-------TAPILLRNLLFPLPLQELH 79

Query: 67  ENLAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVL- 126
           + +   Q+ +  LL  +N+R  AC  IA  I S+   + GGNRE +FH V D+DF++++ 
Sbjct: 80  DPV-ILQVYVAQLLSLLNVRSPACEAIAERIVSYTILMAGGNRETSFHTVVDLDFIRLIT 139

Query: 127 GMESNEEMVE 134
            ME N  + +
Sbjct: 140 WMEENHGLFQ 141

BLAST of Lcy04g004200 vs. NCBI nr
Match: XP_022151640.1 (E3 ubiquitin-protein ligase RNF181-like [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 9.8e-10
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 7   ASSEQPNQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGEN 66
           +S +QP+Q L+VRL    R ISRSP+A         L  ++   ++N V PLPL      
Sbjct: 21  SSGDQPHQVLQVRLRSQSRMISRSPAAI--------LQETSWTPMANAVFPLPL-SALNG 80

Query: 67  LAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNR-EMNFHIVADIDFVQVLGM 126
           L F +  I  LL S+++   AC  IA +I SFV EL GGN  ++N H+VA +D+++ + +
Sbjct: 81  LLFLEAYIRQLLCSLDLPEGACEVIARKIASFVVELAGGNSDQVNLHVVALVDYIEEMAI 135

Query: 127 ESNE 130
            + E
Sbjct: 141 VAEE 135

BLAST of Lcy04g004200 vs. NCBI nr
Match: KAG6595648.1 (hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 7   ASSEQPNQALEVRLSYFRRQISRSP--SATNLQEIVEELTSSNAIQLSNTVIPLPLPEPG 66
           AS EQP Q L+++L YFRR+IS SP    T LQE       +  I L N + PL L E  
Sbjct: 20  ASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQE-------TAPILLRNLLFPLRLQELH 79

Query: 67  ENLAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVL- 126
           + + F Q+ +  LL  +N+R      IA  I S+   + GGNRE +FH V ++D+++V+ 
Sbjct: 80  DPV-FLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHTVLELDYIRVIT 139

Query: 127 GMESNEEMVE 134
            ME N  + +
Sbjct: 140 WMEENHGLFQ 141

BLAST of Lcy04g004200 vs. NCBI nr
Match: KAG6595650.1 (hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-09
Identity = 49/130 (37.69%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 7   ASSEQPNQALEVRLSYFRRQISRSP--SATNLQEIVEELTSSNAIQLSNTVIPLPLPEPG 66
           AS EQP Q L+++L YFRR+IS SP    T LQE       +  I L N + PL L E  
Sbjct: 20  ASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQE-------TAPILLRNLLFPLRLQELH 79

Query: 67  ENLAFFQMLIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVL- 126
           + + F Q+ +  LL  +N+R      IA  I S+   + GGNRE +FH V ++D+++++ 
Sbjct: 80  DPV-FLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHTVLELDYIRLIT 139

Query: 127 GMESNEEMVE 134
            ME N  + +
Sbjct: 140 WMEENHGLFQ 141

BLAST of Lcy04g004200 vs. NCBI nr
Match: KAG6605180.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-08
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 0

Query: 13  NQALEVRLSYFRRQISRSPSATNLQEIVEELTSSNAIQLSNTVIPLPLPEPGENLAFFQM 72
           +Q L+VRL Y  R ISRSP +    +I+EE+ S+    +++T+ PLPL E  E+  F   
Sbjct: 20  DQLLQVRLGYSSRLISRSPYSGLPYDILEEIPST---PIADTLFPLPLREL-EDPLFCHA 79

Query: 73  LIIHLLFSINIRPDACTRIAGEIESFVTELVGGNREMNFHIVADIDFVQVLGMESNEEMV 132
            ++ L+ S+N+   +C  IA +I S VT+    + +  F +VADID++Q+   E +   V
Sbjct: 80  YLVELVSSLNLDSISCNPIAQKITSLVTQWAAVDYDAKFQLVADIDYIQMFWREESRGPV 138

Query: 133 EIG 136
             G
Sbjct: 140 RRG 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DBR54.7e-1037.90E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1G7R81.5e-0835.77E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451... [more]
A0A5D3E1S59.9e-0832.80E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A6J1L1869.9e-0836.59NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4... [more]
A0A1S4DUZ49.9e-0832.80E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ... [more]
Match NameE-valueIdentityDescription
XP_023518048.11.0e-1140.00uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo][more]
XP_022151640.19.8e-1037.90E3 ubiquitin-protein ligase RNF181-like [Momordica charantia][more]
KAG6595648.11.7e-0938.46hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595650.13.7e-0937.69hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605180.12.4e-0835.77E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g004200.1Lcy04g004200.1mRNA