Lcy04g004110 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g004110
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr04: 28014076 .. 28016077 (+)
RNA-Seq Expression	Lcy04g004110
Synteny	Lcy04g004110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATATCATTCAAAGGATACTGATTTAGGTGAGTATTTTTTGCTTTAATTTGTTTGTTATGCATTCTCTAATCTTGTAGTGTTATACTTGCTCATTCTCAATTTGTTTGTTATGCATGTGCCTTATTTTCCTTCCATAATTTTTGCTCTTTCCATAAAACCTTAGTCGATCCATGGGTATTTTTGTGAAATTTATACTCAAATATCAGTAAAAGGCTCCAGTAATAGCATTAGGACAGTCCAAAATTACTCCAATTTTCAACCCATGAGCTGCTCTTCAAAGGGAATTAAGCTAAATTTGAATTCAAGCTTAAATCTCTGTTTTTGCATCACAAGTGGCCATCTCTTCAGTTACTAATTGACAAAATAAGAAGGAAAATACATAATTGTTTCCTATTGATTTTCCAATGTCTCGCCTTTATTCTGGGCGTTCATTAGTTGGTTTACTTACCTTATTTACATTTGTTAATTTCTTGCCTTTTGTGCTGTAATTAGAATTCTTTGTCAACCTTTTCTTTTATTCTTTGTAATTAATGGGTGGCAGCTTTCTTTTCACTCATTCTTGTAGCCGTTGAATGTTTTCCATTTCTCAGATCTACTTGTTTGAACTTGTGCCGGATGGGTTGTTGAGGTATTATTCTTCAATCTTTGTTATAAAATCTTATATGGTCAGGTTGATTATATACACTCATTGAAAACATTCCATTATTGTCCACCTTCGACCCTCATTCATCTCTCACCAAAATTTCTCTTTTTCTTTTCAAAGTTCTAGTGTTTGGGCCAAAATTTCTCATTCACTGTATGATGTAGTTATTTATCTCATAGTCTCTTAATTTCATTAAATTCACATCACACTAAAGTAGTTAAACATTGATTTATCCAGGAATTCTTGGAGGTGTTGTGGAAGAAGATGACCAGTTTATTTTGACCCCAACAACACTTAGGAATGTCCCTTCATTGTTGTATTCTTGCCTTCAATGTTCATTTGAGGTACTCTAGTTTACTTACCGTCTTAATTGTTAGTATGCCCCTTCCTTTATTAATGTTTTAAAATTCGCAGTGCTTTCTTCTAGTCAGAATCAAAAACCCAAAACCTCTCGGATCGGAAATGCTCTCTTCGTTCGCTTCCCGCCGTTTCCTGCCGTTTATTATTTCCTTCTCCGACGTGTTCCTCCCGCCAGCGATCCTATCCTTTTCCACCAAAACAATCAATCCCATTTCAGAGTTCGATTTCAAGTTCAATAGCCCGGAGCTTCGTTCGATACAGACTAATTTCGACCCTTCTATTGTTCGTGAGGAGCTCGATTCTTACTGCAATGACTGGAGGCGTTTGTACGAGTTTTTCAACTGGGTTGAATCATAATGTAAGTTCGATCACACCACCGAGACCTATAATCGCATGCTTGACATTCTTGGTAAGTTCTTTGAGTTCGAGCTTTTGTGGGCTTTGATTCAGCGTATGCAACAATCCCTGTTTGCTTCTCTAGATCATTCGACGTTTCACATTTTGTTTAAGCATTACGCGTCGGCGCATTTGGTTACTGAAGCGGTTGCTGCTTATGAGAGATTGCGTGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTCATTGACTCACTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTGTTTTGGGAAGAGCAAGGGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTCGTGGTTGGCTTAAGGTGGGGTGGTGGAGTAAGTGTAGAGAGTTCTGGGAAGAAATGGATAAGAAGGGCATTCGCAAGGATTTGCATTCGTATTCGATATATATGGATATACAATGTAAGAGCGGGAAGCCATGGAAGGCTAAATTGTACAAGGAGATGAAAAAGAAGAGAATGAAATTGGATGTAGTCGCATACAATACGGTAATTCATGCCATTGGGATTTCAGAAGGCGTTGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGATGTCATGA

mRNA sequence

ATGGGAATTCTTGGAGGTGTTGTGGAAGAAGATGACCAGTTTATTTTGACCCCAACAACACTTAGGAATGTCCCTTCATTGTTGTATTCTTGCCTTCAATGTTCATTTGAGTGCTTTCTTCTAGTCAGAATCAAAAACCCAAAACCTCTCGGATCGGAAATGCTCTCTTCGTTCGCTTCCCGCCGTTTCCTGCCGTTTATTATTTCCTTCTCCGACGTGTTCCTCCCGCCAGCGATCCTATCCTTTTCCACCAAAACAATCAATCCCATTTCAGAGTTCGATTTCAAGTTCAATAGCCCGGAGCTTCGTTCGATACAGACTAATTTCGACCCTTCTATTGTTCGTGAGGAGCTCGATTCTTACTGCAATGACTGGAGGCGTTTGTACGAGTTTTTCAACTGGCGTATGCAACAATCCCTGTTTGCTTCTCTAGATCATTCGACGTTTCACATTTTGTTTAAGCATTACGCGTCGGCGCATTTGGTTACTGAAGCGGTTGCTGCTTATGAGAGATTGCGTGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTCATTGACTCACTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTGTTTTGGGAAGAGCAAGGGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTCGTGGTTGGCTTAAGGTGGGGTGGTGGAGTAAGTGTAGAGAGTTCTGGGAAGAAATGGATAAGAAGGGCATTCGCAAGGATTTGCATTCGTATTCGATATATATGGATATACAATGTAAGAGCGGGAAGCCATGGAAGGCTAAATTGTACAAGGAGATGAAAAAGAAGAGAATGAAATTGGATGTAGTCGCATACAATACGGTAATTCATGCCATTGGGATTTCAGAAGGCGTTGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGATGTCATGA

Coding sequence (CDS)

ATGGGAATTCTTGGAGGTGTTGTGGAAGAAGATGACCAGTTTATTTTGACCCCAACAACACTTAGGAATGTCCCTTCATTGTTGTATTCTTGCCTTCAATGTTCATTTGAGTGCTTTCTTCTAGTCAGAATCAAAAACCCAAAACCTCTCGGATCGGAAATGCTCTCTTCGTTCGCTTCCCGCCGTTTCCTGCCGTTTATTATTTCCTTCTCCGACGTGTTCCTCCCGCCAGCGATCCTATCCTTTTCCACCAAAACAATCAATCCCATTTCAGAGTTCGATTTCAAGTTCAATAGCCCGGAGCTTCGTTCGATACAGACTAATTTCGACCCTTCTATTGTTCGTGAGGAGCTCGATTCTTACTGCAATGACTGGAGGCGTTTGTACGAGTTTTTCAACTGGCGTATGCAACAATCCCTGTTTGCTTCTCTAGATCATTCGACGTTTCACATTTTGTTTAAGCATTACGCGTCGGCGCATTTGGTTACTGAAGCGGTTGCTGCTTATGAGAGATTGCGTGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTCATTGACTCACTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTGTTTTGGGAAGAGCAAGGGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTCGTGGTTGGCTTAAGGTGGGGTGGTGGAGTAAGTGTAGAGAGTTCTGGGAAGAAATGGATAAGAAGGGCATTCGCAAGGATTTGCATTCGTATTCGATATATATGGATATACAATGTAAGAGCGGGAAGCCATGGAAGGCTAAATTGTACAAGGAGATGAAAAAGAAGAGAATGAAATTGGATGTAGTCGCATACAATACGGTAATTCATGCCATTGGGATTTCAGAAGGCGTTGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGATGTCATGA

Protein sequence

MGILGGVVEEDDQFILTPTTLRNVPSLLYSCLQCSFECFLLVRIKNPKPLGSEMLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPELRSIQTNFDPSIVREELDSYCNDWRRLYEFFNWRMQQSLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFCNLIDSLCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQCKSGKPWKAKLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKMS

Homology

[Close]

BLAST of Lcy04g004110 vs. ExPASy Swiss-Prot
Match: Q9M8M3 (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80550 PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 6.3e-70
Identity = 139/267 (52.06%), Postives = 175/267 (65.54%), Query Frame = 0


Query: 86  TINPISEF-DFKFNSPELRSIQTNFDPSIVREELDSYCNDWRRLYEFFNWRMQQSLFASL 145
           ++ PIS   D KF S E    Q+++D   V E L  Y NDW++  EFFNW  ++S F   
Sbjct: 22  SVKPISNVDDAKFRSQE-EEDQSSYDQKTVCEALTCYSNDWQKALEFFNWVERESGFRHT 81

Query: 146 -----------------------------------DHSTFHILFKHYASAHLVTEAVAAY 205
                                              +H TF I+FK Y +AHLV EA+ AY
Sbjct: 82  TETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAY 141

Query: 206 ERLREFKLRDETSFCNLIDSLCEYRHVVEAQDLCFGKS---KGLDCDASTKIHNLILRGW 265
           ++L +F LRDETSF NL+D+LCE++HVVEA++LCFGK+    G    ++TKIHNLILRGW
Sbjct: 142 DKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSV-SNTKIHNLILRGW 201

Query: 266 LKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDV 313
            K+GWW KC+E+W++MD +G+ KDL SYSIYMDI CKSGKPWKA KLYKEMK +RMKLDV
Sbjct: 202 SKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDV 261

[Close]

BLAST of Lcy04g004110 vs. ExPASy Swiss-Prot
Match: Q9LIL5 (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana OX=3702 GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-18
Identity = 66/205 (32.20%), Postives = 103/205 (50.24%), Query Frame = 0


Query: 112 SIVREELDSYCNDWRRLYEF---FNWRMQQSLFASLDHSTFHILFKHYASAHLVTEAVAA 171
           S++  E+       RR  EF   F+   ++  F  ++  T+ +L   YA+AH V EAV  
Sbjct: 143 SMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGF--VNEKTYEVLLNRYAAAHKVDEAVGV 202

Query: 172 YERLREFKLRDE-TSFCNLIDSLCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWL 231
           +ER +EF + D+  +F  L+  LC Y+HV  A+ L   + +   CD   K  N+IL GW 
Sbjct: 203 FERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD--IKAMNMILNGWC 262

Query: 232 KVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDVV 291
            +G   + + FW+++     R D+ SY   ++   K GK  KA +LY+ M   R   DV 
Sbjct: 263 VLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVK 322

Query: 292 AYNTVIHAIGISEGVDFASRVFHEM 312
             N VI A+   + +  A  VF E+
Sbjct: 323 ICNNVIDALCFKKRIPEALEVFREI 343

[Close]

BLAST of Lcy04g004110 vs. ExPASy Swiss-Prot
Match: Q9SSR6 (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-16
Identity = 55/174 (31.61%), Postives = 94/174 (54.02%), Query Frame = 0


Query: 141 FASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRD-ETSFCNLIDSLCEYRHVVEA 200
           +  +    F I+F+ Y+ A+L +EA  A+ R+ EF ++        L+ SLC+ +HV  A
Sbjct: 133 YFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHA 192

Query: 201 QDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMD 260
           Q+  FGK+KG     S K +++++RGW ++   S  R+ ++EM ++    DL +Y+  +D
Sbjct: 193 QEF-FGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLD 252

Query: 261 IQCKSGK-PWKAKLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 313
             CKSG      K+++EM    +K D  ++   IHA   +  V  A +V   MK
Sbjct: 253 ALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMK 305

[Close]

BLAST of Lcy04g004110 vs. ExPASy Swiss-Prot
Match: Q9S7R4 (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OTP43 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.4e-14
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 0


Query: 148 TFHILFKHYASAHLVTEAVAAYERLREFK-LRDETSFCNLIDSLCEYRHVVEAQDLCFGK 207
           TF I+ + YASA    +AV  +  + E    +D  SF  ++D LC+ + V +A +L F  
Sbjct: 128 TFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL-FRA 187

Query: 208 SKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQCKSGK 267
            +G      T  +N+IL GW  +    K  E  +EM ++GI  +L +Y+  +    ++G+
Sbjct: 188 LRG-RFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQ 247

Query: 268 PWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEM 312
              A + + EMKK+  ++DVV Y TV+H  G++  +  A  VF EM
Sbjct: 248 IRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291

[Close]

BLAST of Lcy04g004110 vs. ExPASy Swiss-Prot
Match: Q9FVX2 (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-12
Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 0


Query: 144 LDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDE-TSFCNLIDSLCEYRHVVEAQDL 203
           L+  TF I+ + YA A  V EA+ A+  + ++ L     +F  L+ +LC+ ++V +AQ++
Sbjct: 166 LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEV 225

Query: 204 CFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQC 263
                     D+ T  ++++L GW K     K RE + EM   G   D+ +YSI +DI C
Sbjct: 226 FENMRDRFTPDSKT--YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILC 285

Query: 264 KSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKMS 315
           K+G+  +A  + + M     K     Y+ ++H  G    ++ A   F EM+ S
Sbjct: 286 KAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 336

[Close]

BLAST of Lcy04g004110 vs. ExPASy TrEMBL
Match: A0A6J1GNU3 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455781 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.6e-127
Identity = 235/309 (76.05%), Postives = 247/309 (79.94%), Query Frame = 0


Query: 40  LLVRIKNPKPLGSEMLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNS 99
           LLVRI+N KPL  EMLSSFASRRF P I SFSDVFLP A + FSTKT NPISEF F FN+
Sbjct: 4   LLVRIRNSKPLCPEMLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNT 63

Query: 100 PELRSIQTNFDPSIVREELDSYCNDWRRLYEFFNW------------------------- 159
           PE R  QTNFDP  VRE LDSYCNDWRR YEFFNW                         
Sbjct: 64  PEDRPTQTNFDPPTVREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFF 123

Query: 160 ----------RMQQSLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFC 219
                     RM QS FAS DH+TF I+FK YASAHLV+EA+AAYERLREFKLRDETSFC
Sbjct: 124 EFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFC 183

Query: 220 NLIDSLCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDK 279
           NLIDSLCEYRHVVEAQDLCFGK++ L+CDASTKIHNLILRGWLK+GWWSKCREFWEEMDK
Sbjct: 184 NLIDSLCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREFWEEMDK 243

Query: 280 KGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDF 313
           KG+RKDLHSYSIYMDIQCKSGKPWKA KLYKEMKKK MKLDVVAYNTVIHAIGISEGVDF
Sbjct: 244 KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDF 303

[Close]

BLAST of Lcy04g004110 vs. ExPASy TrEMBL
Match: A0A6J1JMZ1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111488358 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 2.5e-125
Identity = 232/309 (75.08%), Postives = 245/309 (79.29%), Query Frame = 0


Query: 40  LLVRIKNPKPLGSEMLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNS 99
           LLVRI+N KPL  EMLSSFASRRF P I SFSDVFLP A + FSTKT NPIS F F FN+
Sbjct: 4   LLVRIRNSKPLCPEMLSSFASRRFSPSIFSFSDVFLPAAAILFSTKTTNPISVFGFNFNT 63

Query: 100 PELRSIQTNFDPSIVREELDSYCNDWRRLYEFFNW------------------------- 159
           PE R  QTNFDP  VRE LDSYCNDWRR YEFFNW                         
Sbjct: 64  PEDRPTQTNFDPPTVREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFF 123

Query: 160 ----------RMQQSLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFC 219
                     RM QS FAS DH+TF I+FK YASAHLV+EA+AAYERLREFKLRDETSFC
Sbjct: 124 EFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFC 183

Query: 220 NLIDSLCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDK 279
           NLID+LCEYRHVVEAQDLCFGK++ L+CDASTKIHNLILRGWLK+GWWSKCREFWEEMDK
Sbjct: 184 NLIDALCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREFWEEMDK 243

Query: 280 KGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDF 313
           KG+RKDLHSYSIYMDIQCKSGKPWKA KLYKEMKKK MKLDVVAYNTVIHAIGISEGVDF
Sbjct: 244 KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDF 303

[Close]

BLAST of Lcy04g004110 vs. ExPASy TrEMBL
Match: A0A6J1D599 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111017413 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 9.6e-122
Identity = 224/295 (75.93%), Postives = 236/295 (80.00%), Query Frame = 0


Query: 54  MLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPELRSIQTNFDPSI 113
           MLSS ASRRF PFI+SFS+V LPP  L FSTKT  PISE D KFNSPE R +QTNFDPS 
Sbjct: 1   MLSSLASRRFPPFILSFSEVLLPPGNLLFSTKTAAPISELDCKFNSPERRPVQTNFDPST 60

Query: 114 VREELDSYCNDWRRLYEFFNW-----------------------------------RMQQ 173
           VRE LDSYCNDWRR +EFFNW                                   RMQQ
Sbjct: 61  VREALDSYCNDWRRSFEFFNWVESECKFDHTTETYNRMLDILGKFFEFDISWVLVQRMQQ 120

Query: 174 SLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFCNLIDSLCEYRHVVE 233
           S FAS DH+TF ILFK YASAHLVTEA+AAYER REFKLRDETSFCNLID+LCEYRHVVE
Sbjct: 121 SAFASPDHATFRILFKRYASAHLVTEAIAAYERSREFKLRDETSFCNLIDALCEYRHVVE 180

Query: 234 AQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYM 293
           AQDLCFGK+K +DC+ASTKIHNLILRGWLK+GWWSKCREFWEEMD KG+RKDLHSYSIYM
Sbjct: 181 AQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREFWEEMDNKGVRKDLHSYSIYM 240

Query: 294 DIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 313
           DIQCKSGKPWKA KLYKEMKKK MKLDVVAYNTVIHAIGISEGVDFASRVFHEMK
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 295

[Close]

BLAST of Lcy04g004110 vs. ExPASy TrEMBL
Match: A0A1S3CFA1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499823 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 4.1e-112
Identity = 209/295 (70.85%), Postives = 226/295 (76.61%), Query Frame = 0


Query: 54  MLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPELRSIQTNFDPSI 113
           ML SFASRR           FLPPA + FSTKTINPI EFDFKFN+ E R    NFDPS 
Sbjct: 1   MLFSFASRR-----------FLPPATIFFSTKTINPIPEFDFKFNTSERRPTHANFDPST 60

Query: 114 VREELDSYCNDWRRLYEFFNW-----------------------------------RMQQ 173
           VRE LDSYCNDW+R YEFFNW                                   RM+Q
Sbjct: 61  VREALDSYCNDWKRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQ 120

Query: 174 SLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFCNLIDSLCEYRHVVE 233
           S FA  DH+TF ILFK YA+AHLVTEA+AAYERLREFKLRDETSFCNLID+LCE RHV E
Sbjct: 121 SPFAPPDHTTFRILFKRYAAAHLVTEAIAAYERLREFKLRDETSFCNLIDALCESRHVDE 180

Query: 234 AQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYM 293
           AQ+LCFGK++ LDCD+STKIHNLILRGWLK+GWWSKCR+FWEEMDKKG+RKDLHSYSIYM
Sbjct: 181 AQELCFGKNRRLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYM 240

Query: 294 DIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 313
           DIQCKSGKPWKA KLYKEMK+K MKLDVVAYNTVIHA+GISEGVDFASRVFHEMK
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKQKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMK 284

[Close]

BLAST of Lcy04g004110 vs. ExPASy TrEMBL
Match: A0A5A7UVK9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G001970 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 5.3e-112
Identity = 209/295 (70.85%), Postives = 226/295 (76.61%), Query Frame = 0


Query: 54  MLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPELRSIQTNFDPSI 113
           ML SFASRR           FLPPA + FSTKTINPI EFDFKFN+ E R    NFDPS 
Sbjct: 1   MLFSFASRR-----------FLPPATIFFSTKTINPIPEFDFKFNTSERRPTHANFDPST 60

Query: 114 VREELDSYCNDWRRLYEFFNW-----------------------------------RMQQ 173
           VRE LDSYCNDW+R YEFFNW                                   RM+Q
Sbjct: 61  VREALDSYCNDWKRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQ 120

Query: 174 SLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFCNLIDSLCEYRHVVE 233
           S FA  DH+TF ILFK YASAHLVTEA+AAYERLREFKLRDETSFCNLID+LCE RHV E
Sbjct: 121 SPFAPPDHTTFRILFKRYASAHLVTEAIAAYERLREFKLRDETSFCNLIDALCESRHVDE 180

Query: 234 AQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYM 293
           AQ+LCFGK++ LDCD+STKIHNLILRGWLK+GWWSKCR+FWEEMDKKG+RKDLHSYSIYM
Sbjct: 181 AQELCFGKNRRLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYM 240

Query: 294 DIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 313
           DI+CKSGKPWKA KLYKEMK+K MKLDVVAYNTVIHA+GISEGVDFASRVFHEMK
Sbjct: 241 DIRCKSGKPWKAVKLYKEMKQKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMK 284

[Close]

BLAST of Lcy04g004110 vs. NCBI nr
Match: XP_022953157.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953158.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953159.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata])

HSP 1 Score: 464.9 bits (1195), Expect = 5.4e-127
Identity = 235/309 (76.05%), Postives = 247/309 (79.94%), Query Frame = 0


Query: 40  LLVRIKNPKPLGSEMLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNS 99
           LLVRI+N KPL  EMLSSFASRRF P I SFSDVFLP A + FSTKT NPISEF F FN+
Sbjct: 4   LLVRIRNSKPLCPEMLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNT 63

Query: 100 PELRSIQTNFDPSIVREELDSYCNDWRRLYEFFNW------------------------- 159
           PE R  QTNFDP  VRE LDSYCNDWRR YEFFNW                         
Sbjct: 64  PEDRPTQTNFDPPTVREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFF 123

Query: 160 ----------RMQQSLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFC 219
                     RM QS FAS DH+TF I+FK YASAHLV+EA+AAYERLREFKLRDETSFC
Sbjct: 124 EFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFC 183

Query: 220 NLIDSLCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDK 279
           NLIDSLCEYRHVVEAQDLCFGK++ L+CDASTKIHNLILRGWLK+GWWSKCREFWEEMDK
Sbjct: 184 NLIDSLCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREFWEEMDK 243

Query: 280 KGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDF 313
           KG+RKDLHSYSIYMDIQCKSGKPWKA KLYKEMKKK MKLDVVAYNTVIHAIGISEGVDF
Sbjct: 244 KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDF 303

[Close]

BLAST of Lcy04g004110 vs. NCBI nr
Match: XP_022991827.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima] >XP_022991828.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima] >XP_022991829.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima])

HSP 1 Score: 458.4 bits (1178), Expect = 5.1e-125
Identity = 232/309 (75.08%), Postives = 245/309 (79.29%), Query Frame = 0


Query: 40  LLVRIKNPKPLGSEMLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNS 99
           LLVRI+N KPL  EMLSSFASRRF P I SFSDVFLP A + FSTKT NPIS F F FN+
Sbjct: 4   LLVRIRNSKPLCPEMLSSFASRRFSPSIFSFSDVFLPAAAILFSTKTTNPISVFGFNFNT 63

Query: 100 PELRSIQTNFDPSIVREELDSYCNDWRRLYEFFNW------------------------- 159
           PE R  QTNFDP  VRE LDSYCNDWRR YEFFNW                         
Sbjct: 64  PEDRPTQTNFDPPTVREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFF 123

Query: 160 ----------RMQQSLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFC 219
                     RM QS FAS DH+TF I+FK YASAHLV+EA+AAYERLREFKLRDETSFC
Sbjct: 124 EFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFC 183

Query: 220 NLIDSLCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDK 279
           NLID+LCEYRHVVEAQDLCFGK++ L+CDASTKIHNLILRGWLK+GWWSKCREFWEEMDK
Sbjct: 184 NLIDALCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREFWEEMDK 243

Query: 280 KGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDF 313
           KG+RKDLHSYSIYMDIQCKSGKPWKA KLYKEMKKK MKLDVVAYNTVIHAIGISEGVDF
Sbjct: 244 KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDF 303

[Close]

BLAST of Lcy04g004110 vs. NCBI nr
Match: XP_023547614.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023547616.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.9 bits (1169), Expect = 5.6e-124
Identity = 231/309 (74.76%), Postives = 244/309 (78.96%), Query Frame = 0


Query: 40  LLVRIKNPKPLGSEMLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNS 99
           LLVRI+N KPL  EMLSSFASRRF P I SFSDVFLP A + FSTKT NPISEF F FN+
Sbjct: 4   LLVRIRNSKPLCPEMLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNT 63

Query: 100 PELRSIQTNFDPSIVREELDSYCNDWRRLYEFFNW------------------------- 159
           PE R  QTNFDP  VRE LDSYCNDWR  YEFFNW                         
Sbjct: 64  PEDRPTQTNFDPPTVREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDILGKFF 123

Query: 160 ----------RMQQSLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFC 219
                     RM QS FAS DH+TF I+FK YASAHLV+EA+AAYERLREFKLRDETSFC
Sbjct: 124 EFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFC 183

Query: 220 NLIDSLCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDK 279
           NLID+LCEYRHVVEAQDLCFGK++ L+C ASTKIHNLILRGWLK+GWWSKCREFWEEMDK
Sbjct: 184 NLIDALCEYRHVVEAQDLCFGKNRKLNCGASTKIHNLILRGWLKMGWWSKCREFWEEMDK 243

Query: 280 KGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDF 313
           KG+RKDLHSYSIYMDIQCKSGKPWKA KLYKEMKKK MKLDVVAYNTVIHAIGISEGVDF
Sbjct: 244 KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDF 303

[Close]

BLAST of Lcy04g004110 vs. NCBI nr
Match: XP_022148858.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica charantia])

HSP 1 Score: 446.4 bits (1147), Expect = 2.0e-121
Identity = 224/295 (75.93%), Postives = 236/295 (80.00%), Query Frame = 0


Query: 54  MLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPELRSIQTNFDPSI 113
           MLSS ASRRF PFI+SFS+V LPP  L FSTKT  PISE D KFNSPE R +QTNFDPS 
Sbjct: 1   MLSSLASRRFPPFILSFSEVLLPPGNLLFSTKTAAPISELDCKFNSPERRPVQTNFDPST 60

Query: 114 VREELDSYCNDWRRLYEFFNW-----------------------------------RMQQ 173
           VRE LDSYCNDWRR +EFFNW                                   RMQQ
Sbjct: 61  VREALDSYCNDWRRSFEFFNWVESECKFDHTTETYNRMLDILGKFFEFDISWVLVQRMQQ 120

Query: 174 SLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFCNLIDSLCEYRHVVE 233
           S FAS DH+TF ILFK YASAHLVTEA+AAYER REFKLRDETSFCNLID+LCEYRHVVE
Sbjct: 121 SAFASPDHATFRILFKRYASAHLVTEAIAAYERSREFKLRDETSFCNLIDALCEYRHVVE 180

Query: 234 AQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYM 293
           AQDLCFGK+K +DC+ASTKIHNLILRGWLK+GWWSKCREFWEEMD KG+RKDLHSYSIYM
Sbjct: 181 AQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREFWEEMDNKGVRKDLHSYSIYM 240

Query: 294 DIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 313
           DIQCKSGKPWKA KLYKEMKKK MKLDVVAYNTVIHAIGISEGVDFASRVFHEMK
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 295

[Close]

BLAST of Lcy04g004110 vs. NCBI nr
Match: KAG7014158.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 439.1 bits (1128), Expect = 3.2e-119
Identity = 222/295 (75.25%), Postives = 234/295 (79.32%), Query Frame = 0


Query: 54  MLSSFASRRFLPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPELRSIQTNFDPSI 113
           MLSSFASRRF P I SFSDVFLP A + FSTKT NPISEF F FNS + R  QTNFDP  
Sbjct: 1   MLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNSRDDRPTQTNFDPPT 60

Query: 114 VREELDSYCNDWRRLYEFFNW-----------------------------------RMQQ 173
           VRE LDSYCNDWRR YEFFNW                                   RM Q
Sbjct: 61  VREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQ 120

Query: 174 SLFASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDETSFCNLIDSLCEYRHVVE 233
           S FAS DH+TF I+FK YASAHLV+EA+AAYERLREFKLRDETSFCNLID+LCEYRHVVE
Sbjct: 121 SPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFCNLIDALCEYRHVVE 180

Query: 234 AQDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYM 293
           AQDLCFGK++ L+C ASTKIHNLILRGWLK+GWWSKCREFWEEMDKKG+RKDLHSYSIYM
Sbjct: 181 AQDLCFGKNRMLNCGASTKIHNLILRGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240

Query: 294 DIQCKSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 313
           DIQCKSGKPWKA KLYKEMKKK MKLDVVAYNTVIHAIGISEGVDFASRVFHEMK
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 295

[Close]

BLAST of Lcy04g004110 vs. TAIR 10
Match: AT1G80550.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 265.8 bits (678), Expect = 4.5e-71
Identity = 139/267 (52.06%), Postives = 175/267 (65.54%), Query Frame = 0


Query: 86  TINPISEF-DFKFNSPELRSIQTNFDPSIVREELDSYCNDWRRLYEFFNWRMQQSLFASL 145
           ++ PIS   D KF S E    Q+++D   V E L  Y NDW++  EFFNW  ++S F   
Sbjct: 22  SVKPISNVDDAKFRSQE-EEDQSSYDQKTVCEALTCYSNDWQKALEFFNWVERESGFRHT 81

Query: 146 -----------------------------------DHSTFHILFKHYASAHLVTEAVAAY 205
                                              +H TF I+FK Y +AHLV EA+ AY
Sbjct: 82  TETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAY 141

Query: 206 ERLREFKLRDETSFCNLIDSLCEYRHVVEAQDLCFGKS---KGLDCDASTKIHNLILRGW 265
           ++L +F LRDETSF NL+D+LCE++HVVEA++LCFGK+    G    ++TKIHNLILRGW
Sbjct: 142 DKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSV-SNTKIHNLILRGW 201

Query: 266 LKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDV 313
            K+GWW KC+E+W++MD +G+ KDL SYSIYMDI CKSGKPWKA KLYKEMK +RMKLDV
Sbjct: 202 SKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDV 261

[Close]

BLAST of Lcy04g004110 vs. TAIR 10
Match: AT3G15200.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-19
Identity = 66/205 (32.20%), Postives = 103/205 (50.24%), Query Frame = 0


Query: 112 SIVREELDSYCNDWRRLYEF---FNWRMQQSLFASLDHSTFHILFKHYASAHLVTEAVAA 171
           S++  E+       RR  EF   F+   ++  F  ++  T+ +L   YA+AH V EAV  
Sbjct: 143 SMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGF--VNEKTYEVLLNRYAAAHKVDEAVGV 202

Query: 172 YERLREFKLRDE-TSFCNLIDSLCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWL 231
           +ER +EF + D+  +F  L+  LC Y+HV  A+ L   + +   CD   K  N+IL GW 
Sbjct: 203 FERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD--IKAMNMILNGWC 262

Query: 232 KVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQCKSGKPWKA-KLYKEMKKKRMKLDVV 291
            +G   + + FW+++     R D+ SY   ++   K GK  KA +LY+ M   R   DV 
Sbjct: 263 VLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVK 322

Query: 292 AYNTVIHAIGISEGVDFASRVFHEM 312
             N VI A+   + +  A  VF E+
Sbjct: 323 ICNNVIDALCFKKRIPEALEVFREI 343

[Close]

BLAST of Lcy04g004110 vs. TAIR 10
Match: AT1G52640.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 7.5e-18
Identity = 55/174 (31.61%), Postives = 94/174 (54.02%), Query Frame = 0


Query: 141 FASLDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRD-ETSFCNLIDSLCEYRHVVEA 200
           +  +    F I+F+ Y+ A+L +EA  A+ R+ EF ++        L+ SLC+ +HV  A
Sbjct: 133 YFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHA 192

Query: 201 QDLCFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMD 260
           Q+  FGK+KG     S K +++++RGW ++   S  R+ ++EM ++    DL +Y+  +D
Sbjct: 193 QEF-FGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLD 252

Query: 261 IQCKSGK-PWKAKLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMK 313
             CKSG      K+++EM    +K D  ++   IHA   +  V  A +V   MK
Sbjct: 253 ALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMK 305

[Close]

BLAST of Lcy04g004110 vs. TAIR 10
Match: AT1G74900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.0e-15
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 0


Query: 148 TFHILFKHYASAHLVTEAVAAYERLREFK-LRDETSFCNLIDSLCEYRHVVEAQDLCFGK 207
           TF I+ + YASA    +AV  +  + E    +D  SF  ++D LC+ + V +A +L F  
Sbjct: 128 TFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL-FRA 187

Query: 208 SKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQCKSGK 267
            +G      T  +N+IL GW  +    K  E  +EM ++GI  +L +Y+  +    ++G+
Sbjct: 188 LRG-RFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQ 247

Query: 268 PWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEM 312
              A + + EMKK+  ++DVV Y TV+H  G++  +  A  VF EM
Sbjct: 248 IRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291

[Close]

BLAST of Lcy04g004110 vs. TAIR 10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 8.6e-14
Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 0


Query: 144 LDHSTFHILFKHYASAHLVTEAVAAYERLREFKLRDE-TSFCNLIDSLCEYRHVVEAQDL 203
           L+  TF I+ + YA A  V EA+ A+  + ++ L     +F  L+ +LC+ ++V +AQ++
Sbjct: 166 LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEV 225

Query: 204 CFGKSKGLDCDASTKIHNLILRGWLKVGWWSKCREFWEEMDKKGIRKDLHSYSIYMDIQC 263
                     D+ T  ++++L GW K     K RE + EM   G   D+ +YSI +DI C
Sbjct: 226 FENMRDRFTPDSKT--YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILC 285

Query: 264 KSGKPWKA-KLYKEMKKKRMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKMS 315
           K+G+  +A  + + M     K     Y+ ++H  G    ++ A   F EM+ S
Sbjct: 286 KAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 336

The following BLAST results are available for this feature:

BLAST of Lcy04g004110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M8M3	6.3e-70	52.06	Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop...	[more]
Q9LIL5	1.5e-18	32.20	Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis th...	[more]
Q9SSR6	1.1e-16	31.61	Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidop...	[more]
Q9S7R4	8.4e-14	32.53	Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidop...	[more]
Q9FVX2	1.2e-12	29.48	Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop...	[more]

BLAST of Lcy04g004110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNU3	2.6e-127	76.05	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbit...	[more]
A0A6J1JMZ1	2.5e-125	75.08	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbit...	[more]
A0A6J1D599	9.6e-122	75.93	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Momordic...	[more]
A0A1S3CFA1	4.1e-112	70.85	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis ...	[more]
A0A5A7UVK9	5.3e-112	70.85	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lcy04g004110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953157.1	5.4e-127	76.05	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ...	[more]
XP_022991827.1	5.1e-125	75.08	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ...	[more]
XP_023547614.1	5.6e-124	74.76	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ...	[more]
XP_022148858.1	2.0e-121	75.93	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica ...	[more]
KAG7014158.1	3.2e-119	75.25	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Lcy04g004110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80550.1	4.5e-71	52.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G15200.1	1.0e-19	32.20	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G52640.1	7.5e-18	31.61	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G74900.1	6.0e-15	32.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G77360.1	8.6e-14	29.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 272..312 e-value: 1.5E-4 score: 21.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 218..249 e-value: 1.6E-4 score: 19.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 220..247 e-value: 0.012 score: 15.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 215..249 score: 9.174665
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 235..314 e-value: 2.9E-13 score: 51.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 109..229 e-value: 1.1E-6 score: 30.1
None	No IPR available	PANTHER	PTHR46128:SF230	BNAC06G40430D PROTEIN	coord: 93..141 coord: 136..312
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 93..141
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 136..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g004110.1	Lcy04g004110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding