Lcy04g004060 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g004060
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr04: 27908427 .. 27915226 (+)
RNA-Seq Expression	Lcy04g004060
Synteny	Lcy04g004060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCTTCGTTCGCTTCCCGCCATTTCCCGCCGTTTATTATTTCCTTCTCCGACGTGTTCCTCCCGCCGGCGATCCTATCATTTTCCACCAAAACAATCAATCCCATTTCAGAGTTCGATTTCAAGTTCAATAGCCCGGAGCCTCGTTCGATACAGCCTAATTTTGACCCTTCTATTGTTCGTGAGGCGCTCGATTCTTACTGCAATGACTGGAGGTGTTCGTACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACACCACCGAGACCTATAATCGCATGCTCGACATTCTCCGTAAGTTCTTTGAGTTCGAGCTTTCGTGGCTTTGATTCTGTAACGCCCGTAATTTAAGGTAAATTTCAAATTTCCTAAGTTGGAGTTAAGAGAGAAATTTTCAAAAATTAAAAGGAGGGAAATTGGTGGGATTGAAATAATTCAAAGCTGGAATGATGTTTTTGTAATTATAGTGAGTTTGGAGTTAAGCCAAGCCCTCTAAGCCCTAATTCCTTCCTCCTAAATCAGCCACATGCAGCCCGAGGTTGAAGCCAAGCCATCTCAAGCCTCTTCTCCTTCAACCTCAAGATTTTTAGGTCGTTTTGTTCTTTTCTTCTTCTTGCTAGCGGCGACAATTCCTTCTTCTTCTTCCTTTAGTCCATCGTCGGCGAGCTGGAGCAGCAACCACCATCAGAGACAGCTCGACGTTTCTGGCAGCGACGATTGTGGTCCACGGCGGCGTCTTTCTCCGACCTTCGCTTCCGGCAGTGTGGCGACTCAAGCGGCGGTGACAACGAACAGACCGGCGGCGCGCGTTCCTTCGGCAAGATCTTCGACGGCAGCATCAGTTCAGCAAGGGCAGTGGTGCGGTGTAGCGTTCGCAGGCGGGATTTGGTCCGTGCTTTAGCGGTGTCTTCTCTTTCAGCAAATAGCAAACAAGTGGGCTTCGCAGATCCAGCCTCGTCGTGCGTTTTCCGGCGAGCTTCGCGGCGGTACAGCAGTGACAACAACTGGGGATTCACATTTTCCGGCGAGGCAATGTTGAAGGCGTGATTTTCTCCAAATTTCAACTCGTTTCGTTGGGTTTTAACTAATTCCAGCAATGGGTAAGAGTTCTATGACGATTTTGAGGTTCTTTATTGAGTGAAATTAAATACCCATTGATTTTGTCTTGTGGTTTCAAGGCCGTTAGCATGTTGGTGATTCAATTGAAGGATTGGAGAGGATTTGAGATCCTGAACAGCAAGCGACATTCTGTATCACGTGTGGTTAAGGACCTTGGAGTTGAGGGATTAATTTAGTTTTGTTAAGATTATTGAGCCAAGTAAGTGAACTTACTGTTGAACCCTTTTTAATTGGTTGCGCTTGCTGATTTTCTAAAATTCTCGTGCTTATGAGTTGTTCCTGAAATTTATTATTATTGTTAAAAGCATGAAAATCGTGCATGAAAATTTATTATTTTAATTATGTATGAGTTTATGGAAATTGTTGAAAGCATGAAATTTATTATTATCGCTTACATTTGTTGATGTTTGAAATATTTGAGTTGGTGGTCTCTCAAAATTTCGCTAAAGGAATGAGTTTAAATTATTCATGAGTAAAATTCTATTAAAGGAATAAGTTTAAATTATTCATGAGTTTTATAAGTGTACATGAAATTGATGTACATTCAGAGATGCCTACACAGGACTTAGGGACATGAAATTGATGTACCTAAGTCGAGGTTTGTGAAATTGACGACCTCGAGGTTTCGTGAAATTGACGGCCTCCGTAGGAGACACATGAAATTGATGTGTCTAGGATATGCATGAAATTGATGTATATTCTCTCTCATTAGAAAGTTTAAAATAAAGTTTAGAGCCACCAAATTTATATTTGTTGTTGATTTTTAAAATGTTTTTAAAGCGTGACCCAACCTCAATAGTAGGGTCACTTACTGTATATTTTAAAATACTCATTCTTTTCAAAAATATTTTTTTCAGGTATAGGCAAGGGCAGGTGAAAGGCGATTGATGAGAATCCAAAAGGCAGCCATGAGGGAACTATTTTGAATTTCATATTTTATTTTTCTTCCGCTTTAAGAACTATGTTTTACTTTATTGTAAATTTGTTTGAGAAATTTTCTAGAGGCCATGTACATTTTTATTTTAGAAATTATTTAAGAATATTTAAAACCTTTAAAATTAGGGATCCCGAATAAAAGTTTTGTTTTAAAGTTTTTACTTAAAATAAGTGCTTATGTTTTAAAATATTTTTATTTAGAAAGGCCTCCAAAGCATGCATTGTCGTAACGGTCCCTTAAAGGCTATTTAAGAGTTTGGGTCGTTACAGATTCAGCGTGTGCAACAATCCCCGTTTGCTTCTCCGGATCATGCGACGTTTCGCAATTTGTTTAAGCGTTACGCGTCGGTGCATTTGGTTACAGAAGCGATTGCTGCTTATGAGAGATTGCGGCAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTTATTGATGCCCTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTCTTTTGGGAAGAACAAGAGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTTGTGGTTGGCTTAAGATGGGGTGGTGGAGTAAGTGTAGAGAGTTCTGGGAAGAAATGGATAAGAAGGGCGTTCGCAAGGATTTGCATTCGTATTCGATATATATGGATATACAATGTAAGAGCGGGAAGCCATGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAATTGGATGTAGTCGCATACAATACGGTAATTCATGCCATTGGGATTTCAGAAGGCGTTGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGGAAATGGGATGTAAGCCTAATGTCGTGACTTGCAATACTATTATTAAGCTATTTTATGAGAATGGAAGATTCAAGGATGCCCATGTGATGCTTGATCAAATGCTTAAGAAGGACTGTCACCGAATGTTATCACATATCATTTTTTTGGGGAATTGTAGTAAATGGCTAGAAAAAATACCCCCCTCTTTTTTTTTGGCTAAGGAAGTTCAATAATTGCAGACATGGCTTCCACCTTCTTAGGAGCTGCTTTCCAAATTTTTTTTTCCAATTTTACCCCTGGTATATACGTCTATACATAAACGCCGTTAACAGCTGCATACAGATTTTCCCCCATTTTTCGGGTGGATGCACCCTGATTTATAGGGATTTCGGGTTTTGATATCCCTCCAACGGTCAAACAAGATTTTCCTCTATTTTAGGCTTCTTCTATCTCTCCAACCGTAAGACAAGATTTCGTTTGTTAAGTTCCATTAATCTTCCTATATTTTTCCCTCATTTAAATATCATAGCTTAATTTATTTGTTTTTTGCATATCATGATCAAAATAGTGGCTGTAAGTTTGTAATTAAAAGCTTTTCTCGATCACACATGATGTTGATTCTCTTCCAATATCTGGTGGATGTTTTCATTGATCTCTGTATTGTAGCAGAGGTTAATTTTGAGCACTTTGCTCCGTTTTGATTGTGGCATGAAGTAATCATTGTCCTGTATCAAGATTCACGTTACAAAAGAACAACACTAAGACACGTATGTAGTAGTACAGACAGGCAGGCAACAGAGCCTCGTTAAAAAAAAAACAAAAAGACGCTATCACATGTATATACACTATAGTGCACACAAAACTCATAAGCAGACATGCAATAAGCATCGTTTTTATATATAAACATTCAAGATAGACATCTGTATATACATTGTGAGGGTGGGAGGGGAGGCACACAACTTATATACTGGCATGGCTGATATGCATGCATATAATAGTACAGACAGACAACAGAGTGTCATTCAATAGGCGTCTATCTTGGAGACACTATCACATGTATATACACTGTAGCGAACACAGAATTCATAAGCAGACATGTAATAAGCATCGTTCTTATATATAAACATTCAAGATAGACGTCTGTATATACATTGTTGGGGGGGGCACACAATTTATATACTGACATGACTAATATGCGTGTATATAATAGTACAAACAAACAACAAAGTGTCATTCAATAAGCATTCCAGCGCACTTCACCCTTCAATACACAAGACAAAGTTATATCCAGATACATACATCTCAGTTTTAGGCTCCAGTACACACAAGTAGGTCATAAACAGTGTAAATAATATATGTATATATCAGTACATACCACTCTGACGGGGCCAACTTTTTCAACTACATCTTTCTTAATCTGTTTGTTTTTTCCCCCTTGCAGGGTCCTTCTTAACAGCATCCTGAGGTATTTTCACAATAAAAAACAATCAAATTATAACATGTCACAAGGGGTGGATGTAGTTGGCATTTTTCACATAAATCATGAAATATTGCCAAAAAAAAAAAAAAAATCCCTAAAATCAAGGGATTATCTATAAAGTAGGGGGAGACACACAACTTATATACTGACATGACTAATATGCATGTATATAATAGGACAGACAACAGAGTGTCATTCAATAGGCATTCCAGCACACTTTCACCCTTCAATACACAGGACAGAGTTATATCCAGATACATACATCTCAATTTTAGGCTCCAGTACACACAAACAGGTCATAAACGGTGTAAATAATATATGTATATATCAGTACATACCGCTCTGACGGGGTCAACTTCTTCAACTACATCTTTCTTAATCCGTTTGTTTGTTTTTTTTTCCTTGCAAGGTCCTTCTTAACAGCATCCTGGAGGATTTTTACAATAAAAAACAATCAAATTATAATAACATGTCACAAGGGTTGGATGTAGTTGGCCCCTTTCACATAAATCACGAAATATTGCCACAAAAATAAAAAAACAAATCCCTAAAATCAAGGGATTGTCTATAAAGTAGGGGGAGGTCGTTGCAAATATAAGGGAAGGGAAATGAAGCTGTTACCTTAGTTCAATTTTTTTTGGTACAGTCCTCGCGTAGAAGAAGAATCGATTGAGCATGCAAGAGATGGTCGTCGACGCGGCGGGGGAAGGTCGTTGGCACGACGGAGGTGGTTCGTCGACGTGATGTGAGAGGTAGGTAGCGATATACACTCTATTTGGCGGTGGGGAATGGAGGTTTTTGGCTCTCAAGGGTTTCGAGGTGTGGAAGACGAAGATGGACCGACGGGATGGAGCGAATGCATGAGGGCGATTTTGGTGGGAGGGTGGGCGGTGATATGACATGTCATAATTGCAGCATTTAAGGTATTATCTTTTTAGTTGATTCAATTCCTGGGCAATTACTAACGTGTTCTTAGTTGTTTTTTAAGTTCAGATTTTCTTAGTTGCAGGTAGTATATCTTCTGATTGAGAGGACTGTTTTTTCCAAGTAACGCATTCCGAATGTGTTTCTCTCTACTGAGGGAGGTTGAACTTTGTACTCCTTCCCCAATAAAGGTATTGACTCCTTTTTCCGGGAAATAAATTTTTCCAGTAGAAAACGACTGTTTCTTGGATTTTTAAATTTCAAACTTCAAAATAGAAACAATATGATCCATCTAGATTTTCAAATTAGTTTCTTGGATTTTTGAATTTCAAACTTCCTAAAATGTCTCCAACTTATTTTTAGGGGTGTATTTTATCTCTCTTAAACTCTGATTTTAGTTTTAAACGTTAAGAACACGTTAGGCAGTTTGTTGGGGGGCATTTTTGTCTTCTACAAATAGGGATTTATTAATCAGTAAATCGTTTAGCCATCTATTTAATTTATAAAAGTTTGTAGCCATTTTTCAAGCCACCTATTTATTTTTAGCCACTTTTCTTGTTGCCCCTTGTTTTTTCAGGGCTCTTGAAAAGCCCAGAAAGATTCTTATGTTATTTGATAGGATGATTAAATTTAGGGTTCATCCAAAAATGGACACTTACACTACTACAATTTTGACATTTTTTGACACATGGCTAAACCAAATAGAGTGAGAGAGAAAAAAAAAACGTCATAAATTGTTGGAGGCGCATTTTTGGCTGGAAAAGACGGAAATTTTCGTATTTTTTCAATTTTATGACATTTTTTAAACGTCATGAATCTATGACTTTGATTAACTGTCATTAAATTAATTTATTTTTATCTATAAGTATTTTTATTTAAAATAAATAGAAAAATGAAACCTAAACGAAGACGTGCTCAAAATTTAAGAAATCCGCGTGAAGCCCATTGGCACGCAAAACCCTTCTTTTCCTTTTCCCCATTTCTCTTCTCTCATTTCCTCATCTCTACACACAAAACCCAACCCTTCTTTCTCTCAAAACCTAACAAATCATCTACCGATTCAATAGAATGGTTAACCTTTGCCAAAATCCATCTTAACCCTAACAAATCTTTTAATGTGCAATACCAAGCTCTTCATTATTCAATTAATATTTGATTTTTCAACTAAAACTGTGAATCTCAAATTTTGTGACGAAAGATTAAGTTTGAAGTGTGTCATAGAAACGGGCTCCTTTATTTATTGGACCATATTTTGACATTTGGTTGAATTTTTGTTCTTCTTAGGGAACAACAGATGTAGTTTTGTTTTCACGACAAGAAGATGCTCTAGTTGTTATAAATTAGAGATACGACGACGTTCAACTAGATGGAAAACCCATGAAGTTGGAGATTGTGGGAACGAGCATCGTGACACCTGCTGTGTGCCTTCTTCTTCGAATGCCAATTTTGGAAATTCAAATGGATTTCCGAGAGGGTATACTTTTTTGTCAATTGATCATTTGGTCTCTTATTTCATCCTGGACGGACGTCAATAG

mRNA sequence

ATGCTCTCTTCGTTCGCTTCCCGCCATTTCCCGCCGTTTATTATTTCCTTCTCCGACGTGTTCCTCCCGCCGGCGATCCTATCATTTTCCACCAAAACAATCAATCCCATTTCAGAGTTCGATTTCAAGTTCAATAGCCCGGAGCCTCGTTCGATACAGCCTAATTTTGACCCTTCTATTGTTCGTGAGGCGCTCGATTCTTACTGCAATGACTGGAGGTGTTCGTACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACACCACCGAGACCTATAATCGCATGCTCGACATTCTCCAAGCGATTGCTGCTTATGAGAGATTGCGGCAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTTATTGATGCCCTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTCTTTTGGGAAGAACAAGAGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTTGTGGTTGGCTTAAGATGGGGTGGTGGAGTAAGTGTAGAGAGTTCTGGGAAGAAATGGATAAGAAGGGCGTTCGCAAGGATTTGCATTCGTATTCGATATATATGGATATACAATGTAAGAGCGGGAAGCCATGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAATTGGATGTAGTCGCATACAATACGGTAATTCATGCCATTGGGATTTCAGAAGGCGTTGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGGAAATGGGATGGAACAACAGATGTAGTTTTGTTTTCACGACAAGAAGATGCTCTAGTTGTTATAAATTAGAGATACGACGACGTTCAACTAGATGGAAAACCCATGAAGTTGGAGATTGTGGGAACGAGCATCGTGACACCTGCTGTGTGCCTTCTTCTTCGAATGCCAATTTTGGAAATTCAAATGGATTTCCGAGAGGGTATACTTTTTTGTCAATTGATCATTTGGTCTCTTATTTCATCCTGGACGGACGTCAATAG

Coding sequence (CDS)

ATGCTCTCTTCGTTCGCTTCCCGCCATTTCCCGCCGTTTATTATTTCCTTCTCCGACGTGTTCCTCCCGCCGGCGATCCTATCATTTTCCACCAAAACAATCAATCCCATTTCAGAGTTCGATTTCAAGTTCAATAGCCCGGAGCCTCGTTCGATACAGCCTAATTTTGACCCTTCTATTGTTCGTGAGGCGCTCGATTCTTACTGCAATGACTGGAGGTGTTCGTACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACACCACCGAGACCTATAATCGCATGCTCGACATTCTCCAAGCGATTGCTGCTTATGAGAGATTGCGGCAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTTATTGATGCCCTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTCTTTTGGGAAGAACAAGAGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTTGTGGTTGGCTTAAGATGGGGTGGTGGAGTAAGTGTAGAGAGTTCTGGGAAGAAATGGATAAGAAGGGCGTTCGCAAGGATTTGCATTCGTATTCGATATATATGGATATACAATGTAAGAGCGGGAAGCCATGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAATTGGATGTAGTCGCATACAATACGGTAATTCATGCCATTGGGATTTCAGAAGGCGTTGATTTTGCCAGCCGGGTGTTTCATGAGATGAAGGAAATGGGATGGAACAACAGATGTAGTTTTGTTTTCACGACAAGAAGATGCTCTAGTTGTTATAAATTAGAGATACGACGACGTTCAACTAGATGGAAAACCCATGAAGTTGGAGATTGTGGGAACGAGCATCGTGACACCTGCTGTGTGCCTTCTTCTTCGAATGCCAATTTTGGAAATTCAAATGGATTTCCGAGAGGGTATACTTTTTTGTCAATTGATCATTTGGTCTCTTATTTCATCCTGGACGGACGTCAATAG

Protein sequence

MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSIVREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDILQAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVEAQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGWNNRCSFVFTTRRCSSCYKLEIRRRSTRWKTHEVGDCGNEHRDTCCVPSSSNANFGNSNGFPRGYTFLSIDHLVSYFILDGRQ

Homology

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BLAST of Lcy04g004060 vs. ExPASy Swiss-Prot
Match: Q9M8M3 (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80550 PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.6e-71
Identity = 143/269 (53.16%), Postives = 173/269 (64.31%), Query Frame = 0


Query: 33  TINPISEF-DFKFNSPEPRSIQPNFDPSIVREALDSYCNDWRCSYEFFNWVESECKFDHT 92
           ++ PIS   D KF S E    Q ++D   V EAL  Y NDW+ + EFFNWVE E  F HT
Sbjct: 22  SVKPISNVDDAKFRSQEEED-QSSYDQKTVCEALTCYSNDWQKALEFFNWVERESGFRHT 81

Query: 93  TETYNRMLDIL-------------------------------------------QAIAAY 152
           TET+NR++DIL                                           +AI AY
Sbjct: 82  TETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAY 141

Query: 153 ERLRQFKLRDETSFCNLIDALCEYRHVVEAQDLSFGKNKRLD--CDASTKIHNLILCGWL 212
           ++L  F LRDETSF NL+DALCE++HVVEA++L FGKN   +    ++TKIHNLIL GW 
Sbjct: 142 DKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWS 201

Query: 213 KMGWWSKCREFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVV 256
           K+GWW KC+E+W++MD +GV KDL SYSIYMDI CKSGKPWKAVKLYKEMK + MKLDVV
Sbjct: 202 KLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVV 261

[Close]

BLAST of Lcy04g004060 vs. ExPASy Swiss-Prot
Match: Q9FVX2 (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-15
Identity = 57/238 (23.95%), Postives = 103/238 (43.28%), Query Frame = 0


Query: 60  IVREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDILQAIAAYE-------RLR 119
           +V + L+ + N    +Y FF W E +  ++H+   Y+ M++    I  Y+        +R
Sbjct: 102 VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMR 161

Query: 120 QFKLRDETSFC-----------------------------------NLIDALCEYRHVVE 179
           + K+ +  +FC                                    L+ ALC+ ++V +
Sbjct: 162 KKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRK 221

Query: 180 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 239
           AQ++      R   D+ T  ++++L GW K     K RE + EM   G   D+ +YSI +
Sbjct: 222 AQEVFENMRDRFTPDSKT--YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMV 281

Query: 240 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DI CK+G+  +A+ + + M     K     Y+ ++H  G    ++ A   F EM+  G
Sbjct: 282 DILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSG 337

[Close]

BLAST of Lcy04g004060 vs. ExPASy Swiss-Prot
Match: Q9SJN2 (Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana OX=3702 GN=At2g36240 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-13
Identity = 66/256 (25.78%), Postives = 124/256 (48.44%), Query Frame = 0


Query: 19  DVFLPPAI-LSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSIVREALDSYCNDWRCSYE 78
           ++ +PP + LS S K  N ++  +   N P  +++ P      +R  + ++       + 
Sbjct: 41  EISIPPTLTLSPSPKHSNFVNFLE--NNLPHHQTLTPQTLLGFLRSKIRNHPLYAHYDFA 100

Query: 79  FFNWVESECKFDHTTETYNRMLDILQAIAAYE---RLRQFKLRD--------------ET 138
            FNW  +   F H  +++  M   L A   ++   RL  F   +              E 
Sbjct: 101 VFNWAATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFVAANPCPCSSGIFSCPELEP 160

Query: 139 SFCNLIDALCEYRHVVEAQDLSFGKNKRL-DCDASTKIHNLILCGWLKMGWWSKCREFWE 198
            F + IDA C  R +  A  L+F   KRL D   +  ++N ++ G++K G   K   F++
Sbjct: 161 IFRSAIDAYCRARKMDYAL-LAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQ 220

Query: 199 EMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISE 256
            M K+  + D+ +++I ++  C+S K   A+ L++EMK+KG + +VV++NT+I     S 
Sbjct: 221 RMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSG 280

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BLAST of Lcy04g004060 vs. ExPASy Swiss-Prot
Match: Q9S7R4 (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OTP43 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-13
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 0


Query: 117 RDETSFCNLIDALCEYRHVVEAQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCRE 176
           +D  SF  ++D LC+ + V +A +L      R   D  T  +N+IL GW  +    K  E
Sbjct: 159 QDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT--YNVILNGWCLIKRTPKALE 218

Query: 177 FWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIG 236
             +EM ++G+  +L +Y+  +    ++G+   A + + EMKK+  ++DVV Y TV+H  G
Sbjct: 219 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 278

Query: 237 ISEGVDFASRVFHEMKEMG 256
           ++  +  A  VF EM   G
Sbjct: 279 VAGEIKRARNVFDEMIREG 295

[Close]

BLAST of Lcy04g004060 vs. ExPASy Swiss-Prot
Match: Q9C9A2 (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-13
Identity = 54/241 (22.41%), Postives = 105/241 (43.57%), Query Frame = 0


Query: 58  PSIVREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL--------------- 117
           P+++ E L    N    +   F W E++  F HTT  YN +++ L               
Sbjct: 94  PALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDD 153

Query: 118 --------------------------QAIAAYERLRQFKLRDETS-FCNLIDALCEYRHV 177
                                     +AI A+ ++ +F  + E+S F  ++D L + R+V
Sbjct: 154 MKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNV 213

Query: 178 VEAQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSI 237
            +AQ + F K K+   +   K + ++L GW +     +  E   EM  +G   D+ +Y I
Sbjct: 214 GDAQKV-FDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGI 273

Query: 238 YMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 257
            ++  CK+ K  +A++ + EM+++  K     + ++I+ +G  + ++ A   F   K  G
Sbjct: 274 IINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSG 333

[Close]

BLAST of Lcy04g004060 vs. ExPASy TrEMBL
Match: A0A6J1GNU3 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455781 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 3.1e-126
Identity = 229/298 (76.85%), Postives = 237/298 (79.53%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           MLSSFASR FPP I SFSDVFLP A + FSTKT NPISEF F FN+PE R  Q NFDP  
Sbjct: 18  MLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNTPEDRPTQTNFDPPT 77

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDWR SYEFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 78  VREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQ 137

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYERLR+FKLRDETSFCNLID+LCEYRHVVE
Sbjct: 138 SPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFCNLIDSLCEYRHVVE 197

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQDL FGKN++L+CDASTKIHNLIL GWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM
Sbjct: 198 AQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 257

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG
Sbjct: 258 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 315

[Close]

BLAST of Lcy04g004060 vs. ExPASy TrEMBL
Match: A0A6J1D599 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111017413 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 1.0e-124
Identity = 227/298 (76.17%), Postives = 236/298 (79.19%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           MLSS ASR FPPFI+SFS+V LPP  L FSTKT  PISE D KFNSPE R +Q NFDPS 
Sbjct: 1   MLSSLASRRFPPFILSFSEVLLPPGNLLFSTKTAAPISELDCKFNSPERRPVQTNFDPST 60

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDWR S+EFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 61  VREALDSYCNDWRRSFEFFNWVESECKFDHTTETYNRMLDILGKFFEFDISWVLVQRMQQ 120

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYER R+FKLRDETSFCNLIDALCEYRHVVE
Sbjct: 121 SAFASPDHATFRILFKRYASAHLVTEAIAAYERSREFKLRDETSFCNLIDALCEYRHVVE 180

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQDL FGKNK++DC+ASTKIHNLIL GWLKMGWWSKCREFWEEMD KGVRKDLHSYSIYM
Sbjct: 181 AQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREFWEEMDNKGVRKDLHSYSIYM 240

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 298

[Close]

BLAST of Lcy04g004060 vs. ExPASy TrEMBL
Match: A0A6J1JMZ1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111488358 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 6.5e-124
Identity = 227/298 (76.17%), Postives = 234/298 (78.52%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           MLSSFASR F P I SFSDVFLP A + FSTKT NPIS F F FN+PE R  Q NFDP  
Sbjct: 18  MLSSFASRRFSPSIFSFSDVFLPAAAILFSTKTTNPISVFGFNFNTPEDRPTQTNFDPPT 77

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDWR SYEFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 78  VREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQ 137

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYERLR+FKLRDETSFCNLIDALCEYRHVVE
Sbjct: 138 SPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFCNLIDALCEYRHVVE 197

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQDL FGKN++L+CDASTKIHNLIL GWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM
Sbjct: 198 AQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 257

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVF EMKEMG
Sbjct: 258 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFQEMKEMG 315

[Close]

BLAST of Lcy04g004060 vs. ExPASy TrEMBL
Match: A0A1S3CFA1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499823 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 1.0e-116
Identity = 216/298 (72.48%), Postives = 227/298 (76.17%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           ML SFASR            FLPPA + FSTKTINPI EFDFKFN+ E R    NFDPS 
Sbjct: 1   MLFSFASRR-----------FLPPATIFFSTKTINPIPEFDFKFNTSERRPTHANFDPST 60

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDW+ SYEFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 61  VREALDSYCNDWKRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQ 120

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYERLR+FKLRDETSFCNLIDALCE RHV E
Sbjct: 121 SPFAPPDHTTFRILFKRYAAAHLVTEAIAAYERLREFKLRDETSFCNLIDALCESRHVDE 180

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQ+L FGKN+RLDCD+STKIHNLIL GWLKMGWWSKCR+FWEEMDKKGVRKDLHSYSIYM
Sbjct: 181 AQELCFGKNRRLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYM 240

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMK+KGMKLDVVAYNTVIHA+GISEGVDFASRVFHEMKEMG
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKQKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMG 287

[Close]

BLAST of Lcy04g004060 vs. ExPASy TrEMBL
Match: A0A5A7UVK9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G001970 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.9e-116
Identity = 215/298 (72.15%), Postives = 227/298 (76.17%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           ML SFASR            FLPPA + FSTKTINPI EFDFKFN+ E R    NFDPS 
Sbjct: 1   MLFSFASRR-----------FLPPATIFFSTKTINPIPEFDFKFNTSERRPTHANFDPST 60

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDW+ SYEFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 61  VREALDSYCNDWKRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQ 120

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYERLR+FKLRDETSFCNLIDALCE RHV E
Sbjct: 121 SPFAPPDHTTFRILFKRYASAHLVTEAIAAYERLREFKLRDETSFCNLIDALCESRHVDE 180

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQ+L FGKN+RLDCD+STKIHNLIL GWLKMGWWSKCR+FWEEMDKKGVRKDLHSYSIYM
Sbjct: 181 AQELCFGKNRRLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYM 240

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DI+CKSGKPWKAVKLYKEMK+KGMKLDVVAYNTVIHA+GISEGVDFASRVFHEMKEMG
Sbjct: 241 DIRCKSGKPWKAVKLYKEMKQKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMG 287

[Close]

BLAST of Lcy04g004060 vs. NCBI nr
Match: XP_022953157.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953158.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953159.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata])

HSP 1 Score: 461.5 bits (1186), Expect = 6.4e-126
Identity = 229/298 (76.85%), Postives = 237/298 (79.53%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           MLSSFASR FPP I SFSDVFLP A + FSTKT NPISEF F FN+PE R  Q NFDP  
Sbjct: 18  MLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNTPEDRPTQTNFDPPT 77

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDWR SYEFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 78  VREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQ 137

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYERLR+FKLRDETSFCNLID+LCEYRHVVE
Sbjct: 138 SPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFCNLIDSLCEYRHVVE 197

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQDL FGKN++L+CDASTKIHNLIL GWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM
Sbjct: 198 AQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 257

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG
Sbjct: 258 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 315

[Close]

BLAST of Lcy04g004060 vs. NCBI nr
Match: XP_023547614.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023547616.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 461.5 bits (1186), Expect = 6.4e-126
Identity = 229/298 (76.85%), Postives = 236/298 (79.19%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           MLSSFASR FPP I SFSDVFLP A + FSTKT NPISEF F FN+PE R  Q NFDP  
Sbjct: 18  MLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNTPEDRPTQTNFDPPT 77

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 78  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQ 137

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYERLR+FKLRDETSFCNLIDALCEYRHVVE
Sbjct: 138 SPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFCNLIDALCEYRHVVE 197

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQDL FGKN++L+C ASTKIHNLIL GWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM
Sbjct: 198 AQDLCFGKNRKLNCGASTKIHNLILRGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 257

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVF EMKEMG
Sbjct: 258 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFQEMKEMG 315

[Close]

BLAST of Lcy04g004060 vs. NCBI nr
Match: XP_022148858.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica charantia])

HSP 1 Score: 456.4 bits (1173), Expect = 2.1e-124
Identity = 227/298 (76.17%), Postives = 236/298 (79.19%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           MLSS ASR FPPFI+SFS+V LPP  L FSTKT  PISE D KFNSPE R +Q NFDPS 
Sbjct: 1   MLSSLASRRFPPFILSFSEVLLPPGNLLFSTKTAAPISELDCKFNSPERRPVQTNFDPST 60

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDWR S+EFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 61  VREALDSYCNDWRRSFEFFNWVESECKFDHTTETYNRMLDILGKFFEFDISWVLVQRMQQ 120

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYER R+FKLRDETSFCNLIDALCEYRHVVE
Sbjct: 121 SAFASPDHATFRILFKRYASAHLVTEAIAAYERSREFKLRDETSFCNLIDALCEYRHVVE 180

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQDL FGKNK++DC+ASTKIHNLIL GWLKMGWWSKCREFWEEMD KGVRKDLHSYSIYM
Sbjct: 181 AQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREFWEEMDNKGVRKDLHSYSIYM 240

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 298

[Close]

BLAST of Lcy04g004060 vs. NCBI nr
Match: KAG7014158.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 455.3 bits (1170), Expect = 4.6e-124
Identity = 228/298 (76.51%), Postives = 234/298 (78.52%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           MLSSFASR FPP I SFSDVFLP A + FSTKT NPISEF F FNS + R  Q NFDP  
Sbjct: 1   MLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNSRDDRPTQTNFDPPT 60

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDWR SYEFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 61  VREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQ 120

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYERLR+FKLRDETSFCNLIDALCEYRHVVE
Sbjct: 121 SPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFCNLIDALCEYRHVVE 180

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQDL FGKN+ L+C ASTKIHNLIL GWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM
Sbjct: 181 AQDLCFGKNRMLNCGASTKIHNLILRGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 298

[Close]

BLAST of Lcy04g004060 vs. NCBI nr
Match: KAG6575615.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 455.3 bits (1170), Expect = 4.6e-124
Identity = 228/298 (76.51%), Postives = 234/298 (78.52%), Query Frame = 0


Query: 1   MLSSFASRHFPPFIISFSDVFLPPAILSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSI 60
           MLSSFASR FPP I SFSDVFLP A + FSTKT NPISEF F FNS + R  Q NFDP  
Sbjct: 1   MLSSFASRRFPPSIFSFSDVFLPAAAILFSTKTTNPISEFGFNFNSRDDRPTQTNFDPPT 60

Query: 61  VREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL------------------ 120
           VREALDSYCNDWR SYEFFNWVESECKFDHTTETYNRMLDIL                  
Sbjct: 61  VREALDSYCNDWRRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQ 120

Query: 121 -------------------------QAIAAYERLRQFKLRDETSFCNLIDALCEYRHVVE 180
                                    +AIAAYERLR+FKLRDETSFCNLIDALCEYRHVVE
Sbjct: 121 SPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREFKLRDETSFCNLIDALCEYRHVVE 180

Query: 181 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240
           AQDL FGKN+ L+C ASTKIHNLIL GWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM
Sbjct: 181 AQDLCFGKNRMLNCGASTKIHNLILRGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 240

Query: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG
Sbjct: 241 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 298

[Close]

BLAST of Lcy04g004060 vs. TAIR 10
Match: AT1G80550.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-72
Identity = 143/269 (53.16%), Postives = 173/269 (64.31%), Query Frame = 0


Query: 33  TINPISEF-DFKFNSPEPRSIQPNFDPSIVREALDSYCNDWRCSYEFFNWVESECKFDHT 92
           ++ PIS   D KF S E    Q ++D   V EAL  Y NDW+ + EFFNWVE E  F HT
Sbjct: 22  SVKPISNVDDAKFRSQEEED-QSSYDQKTVCEALTCYSNDWQKALEFFNWVERESGFRHT 81

Query: 93  TETYNRMLDIL-------------------------------------------QAIAAY 152
           TET+NR++DIL                                           +AI AY
Sbjct: 82  TETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAY 141

Query: 153 ERLRQFKLRDETSFCNLIDALCEYRHVVEAQDLSFGKNKRLD--CDASTKIHNLILCGWL 212
           ++L  F LRDETSF NL+DALCE++HVVEA++L FGKN   +    ++TKIHNLIL GW 
Sbjct: 142 DKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWS 201

Query: 213 KMGWWSKCREFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVV 256
           K+GWW KC+E+W++MD +GV KDL SYSIYMDI CKSGKPWKAVKLYKEMK + MKLDVV
Sbjct: 202 KLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVV 261

[Close]

BLAST of Lcy04g004060 vs. TAIR 10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-16
Identity = 57/238 (23.95%), Postives = 103/238 (43.28%), Query Frame = 0


Query: 60  IVREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDILQAIAAYE-------RLR 119
           +V + L+ + N    +Y FF W E +  ++H+   Y+ M++    I  Y+        +R
Sbjct: 102 VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMR 161

Query: 120 QFKLRDETSFC-----------------------------------NLIDALCEYRHVVE 179
           + K+ +  +FC                                    L+ ALC+ ++V +
Sbjct: 162 KKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRK 221

Query: 180 AQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSIYM 239
           AQ++      R   D+ T  ++++L GW K     K RE + EM   G   D+ +YSI +
Sbjct: 222 AQEVFENMRDRFTPDSKT--YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMV 281

Query: 240 DIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 256
           DI CK+G+  +A+ + + M     K     Y+ ++H  G    ++ A   F EM+  G
Sbjct: 282 DILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSG 337

[Close]

BLAST of Lcy04g004060 vs. TAIR 10
Match: AT2G36240.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-15
Identity = 66/256 (25.78%), Postives = 124/256 (48.44%), Query Frame = 0


Query: 19  DVFLPPAI-LSFSTKTINPISEFDFKFNSPEPRSIQPNFDPSIVREALDSYCNDWRCSYE 78
           ++ +PP + LS S K  N ++  +   N P  +++ P      +R  + ++       + 
Sbjct: 41  EISIPPTLTLSPSPKHSNFVNFLE--NNLPHHQTLTPQTLLGFLRSKIRNHPLYAHYDFA 100

Query: 79  FFNWVESECKFDHTTETYNRMLDILQAIAAYE---RLRQFKLRD--------------ET 138
            FNW  +   F H  +++  M   L A   ++   RL  F   +              E 
Sbjct: 101 VFNWAATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFVAANPCPCSSGIFSCPELEP 160

Query: 139 SFCNLIDALCEYRHVVEAQDLSFGKNKRL-DCDASTKIHNLILCGWLKMGWWSKCREFWE 198
            F + IDA C  R +  A  L+F   KRL D   +  ++N ++ G++K G   K   F++
Sbjct: 161 IFRSAIDAYCRARKMDYAL-LAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQ 220

Query: 199 EMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISE 256
            M K+  + D+ +++I ++  C+S K   A+ L++EMK+KG + +VV++NT+I     S 
Sbjct: 221 RMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSG 280

[Close]

BLAST of Lcy04g004060 vs. TAIR 10
Match: AT1G74900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-14
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 0


Query: 117 RDETSFCNLIDALCEYRHVVEAQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCRE 176
           +D  SF  ++D LC+ + V +A +L      R   D  T  +N+IL GW  +    K  E
Sbjct: 159 QDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT--YNVILNGWCLIKRTPKALE 218

Query: 177 FWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIG 236
             +EM ++G+  +L +Y+  +    ++G+   A + + EMKK+  ++DVV Y TV+H  G
Sbjct: 219 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 278

Query: 237 ISEGVDFASRVFHEMKEMG 256
           ++  +  A  VF EM   G
Sbjct: 279 VAGEIKRARNVFDEMIREG 295

[Close]

BLAST of Lcy04g004060 vs. TAIR 10
Match: AT1G71060.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-14
Identity = 54/241 (22.41%), Postives = 105/241 (43.57%), Query Frame = 0


Query: 58  PSIVREALDSYCNDWRCSYEFFNWVESECKFDHTTETYNRMLDIL--------------- 117
           P+++ E L    N    +   F W E++  F HTT  YN +++ L               
Sbjct: 94  PALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDD 153

Query: 118 --------------------------QAIAAYERLRQFKLRDETS-FCNLIDALCEYRHV 177
                                     +AI A+ ++ +F  + E+S F  ++D L + R+V
Sbjct: 154 MKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNV 213

Query: 178 VEAQDLSFGKNKRLDCDASTKIHNLILCGWLKMGWWSKCREFWEEMDKKGVRKDLHSYSI 237
            +AQ + F K K+   +   K + ++L GW +     +  E   EM  +G   D+ +Y I
Sbjct: 214 GDAQKV-FDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGI 273

Query: 238 YMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMG 257
            ++  CK+ K  +A++ + EM+++  K     + ++I+ +G  + ++ A   F   K  G
Sbjct: 274 IINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSG 333

The following BLAST results are available for this feature:

BLAST of Lcy04g004060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M8M3	1.6e-71	53.16	Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop...	[more]
Q9FVX2	2.8e-15	23.95	Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop...	[more]
Q9SJN2	1.2e-13	25.78	Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana OX...	[more]
Q9S7R4	2.6e-13	31.65	Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidop...	[more]
Q9C9A2	4.5e-13	22.41	Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidop...	[more]

BLAST of Lcy04g004060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNU3	3.1e-126	76.85	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbit...	[more]
A0A6J1D599	1.0e-124	76.17	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Momordic...	[more]
A0A6J1JMZ1	6.5e-124	76.17	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbit...	[more]
A0A1S3CFA1	1.0e-116	72.48	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis ...	[more]
A0A5A7UVK9	2.9e-116	72.15	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lcy04g004060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953157.1	6.4e-126	76.85	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ...	[more]
XP_023547614.1	6.4e-126	76.85	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ...	[more]
XP_022148858.1	2.1e-124	76.17	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica ...	[more]
KAG7014158.1	4.6e-124	76.51	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG6575615.1	4.6e-124	76.51	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Lcy04g004060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80550.1	1.1e-72	53.16	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G77360.1	2.0e-16	23.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G36240.1	8.4e-15	25.78	pentatricopeptide (PPR) repeat-containing protein	[more]
AT1G74900.1	1.9e-14	31.65	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G71060.1	3.2e-14	22.41	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 64..304 e-value: 2.5E-25 score: 91.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 159..186 e-value: 0.018 score: 15.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 188..234 e-value: 5.7E-11 score: 42.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 157..188 e-value: 2.9E-4 score: 18.8 coord: 192..225 e-value: 7.4E-5 score: 20.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 224..258 score: 9.262356
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 154..188 score: 8.856788
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 189..223 score: 10.917512
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 104..257
None	No IPR available	PANTHER	PTHR47942:SF22	OSJNBA0033G05.8 PROTEIN	coord: 104..257
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 32..103
None	No IPR available	PANTHER	PTHR47942:SF22	OSJNBA0033G05.8 PROTEIN	coord: 32..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g004060.1	Lcy04g004060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding