Lcy04g003860 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g003860
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr04: 27314337 .. 27316592 (+)
RNA-Seq ExpressionLcy04g003860
SyntenyLcy04g003860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTATCCGAACTGCATCTTGCTCTGTTCTGATTAATGGGTGTCCAACTGGTCAATTTTCACCCCAACGAGGTATAAGGCAGGGTGATTCTCTCTCTCCTTATCTATTTTTGCTTGTTTTGGATTCCCTTTCTTCCATGATTACAGGTGAAATGCGGCGGCGTAGATTGACGGGCCTTCGTCCGGGTAAGCTATGTCCGGATATATCCCATTTATTTTTCGCCGATGACAGTCTCATCTTTTGTAAGGCGAAAATAGAAGAAGTTTGGACTTTCCGGATGATTCTAGAAAGGTATGAAAAAGCTTCGGGACAGCGAGTAAACTACAATAAGTCATCAATGGTTTTCTCACCTAATGTGTCAGGTGAATTCCGCTCCACTCTTGCTAATATATTACAAATGCCAGTGGTGGACAACCTGGGGTTGTATTTGGGAGTTCCCTCATTTTTTTCCCGTAAAAGAAGTGATGACTTCAGAGCTATCAAACAACGAGTTTGGCAAGCTTTGCAAGGTTGGAAGGGTAAATTATTCTCGATTGGGGGAAAGGAGGTGTTTATTAAAAGTGTAGCCCAAGCGATTCCCACCTATTTAATGAGTTGTTTCCGCCTACCTCAAATGGTCTGCAATGATATCCATAGAATGATGGCCAGGTTTTGGTGGGGCACCACTGAGACAAAGAAGAAAATGCATTGGAAGAAATGGGAGTTTTTATGTCTCCCAAAAGAGATGGGAGGTCTAAATTTTCGAGATTTGACTTGTTTTAACAGATCTCTGTTAGCAAAACAGGTGTGGCGACTTTTTAAGCATCCTGATTTATTGGCCTCTAAAGTTATTAAAGGACAATATTCGACCCATGATTCATGGCTAACGGCCCCGCTTAAAGCCAATAGTTCAGTTTTCTGGAAAGGCTTTGTTTGGGCTCGTGAGTTGGTCACATTGGGCATTAGAAAACGTGTTGGGAATGGCAATTCCATTCGTTTTTTCAAGGATCCGTGGGTTCCCAAAGAGTTTTCATTTAAACCTTTAGCTCTCCAACATTCAGAAGTGCAAGACGATATGATGGTGGCTGATTTCATCATTTCGTCGGGAGGTTGGGATATGGAGAAGCTTACAAATGTGGTGATAGAGGAGGATGTTGTATTGATTCAGTCTATACCGATTGGTGGGCGAAATGAGGAAGATATTTGGATATGGCACTATACACGGCACGGTGAATATTCTACTAAGAGTGGATATAAGCTAGAAGTGAAGTCTAATTTCAATCGAGCATCTTCGAGTACCAATGCACAAAGTTCTTGGTGGAATCTTTTATGGAAAACTAAAGTACCATGAAAGATTAAATTATTCATTTGGAAAGCATATCATGATTGTTTACCAACAAATTTTTGTCTTTGGAGGCGGGGTATGGATGTGTCGAATTTGTGCAACTTTTGCCGATGTGAGCAAGAAAGTGTTGATCATGCTTTGTGTGGGTGCAAGAGGTCCAAGAAGATCTGTAACTCGCTTTTCCCACGAGAGGACTCTGAAATCAAGGTTGCTAATAATTTTGCTGACAGAATGTTAAGACTAGCAGATCGACTTAGTACAGAGGAGTTTGAGAAACTATGTATAACGTTATGGGCAATTTGGAATGATAGGAATAGTTTCCTTCTGGGCAGTCCCATTATGGAGTGGCAAGCAAGATGCGAATGGATCCAGCAGTAATGGGAAGAAATTAGGCGGCCAAATGTTAATGCAGCAACTTCACGTAGTAGTGCAGAATCTGTCAATGAACCCATTGCGCAGAAGGGTGTTTCATGTGCGTATACAGATGCTGCCATCAAACCCAACAAGATAGGTGTTGGTGTTGGTGTGGTTGTACAGGACCATGAAGGCAAATTACAAGCTGCAATGTCGAAATTTGAATTTCGATCTTTGTCTCCTTTGGTGGCGGAGGTGCATGCAATTTTTAATGTTGTTCGTTTATTGACCCAATTGCAAACGAATGAGATTATCATATATTCAGATTCCCTCGTTGCAATTAGAATGATAAATCAAGAGCAAGAGACAGAATCAGAGGTGCACCATTGGATTTCACAAATCCAAGACATGAGTCAAAATTTTTCCAAGATGTCCTTTGTCCATGTTCGAAGACTTGGAAACAAGCGGGCCGATGCATTAGCCAAGCAAGCGCTTAGAGATTCACAATCTATGTTGTGGTTGTCTAATTTTCTATCATGGTTATTATCAATGGGAATTAATGCCCATTGCTAA

mRNA sequence

ATGGATTGTATCCGAACTGCATCTTGCTCTGTTCTGATTAATGGGTGTCCAACTGGTCAATTTTCACCCCAACGAGGTATAAGGCAGGGTGATTCTCTCTCTCCTTATCTATTTTTGCTTGTTTTGGATTCCCTTTCTTCCATGATTACAGGTGAAATGCGGCGGCGTAGATTGACGGGCCTTCGTCCGGGTGAATTCCGCTCCACTCTTGCTAATATATTACAAATGCCAGTGGTGGACAACCTGGGGTTGTATTTGGGAGTTCCCTCATTTTTTTCCCGTAAAAGAAGTGATGACTTCAGAGCTATCAAACAACGAGTTTGGCAAGCTTTGCAAGGTTGGAAGGGTAAATTATTCTCGATTGGGGGAAAGGAGGTGTTTATTAAAAGTGTAGCCCAAGCGATTCCCACCTATTTAATGAGTTGTTTCCGCCTACCTCAAATGGTCTGCAATGATATCCATAGAATGATGGCCAGGTTTTGGTGGGGCACCACTGAGACAAAGAAGAAAATGCATTGGAAGAAATGGGAGTTTTTATGTCTCCCAAAAGAGATGGGAGGTCTAAATTTTCGAGATTTGACTTGTTTTAACAGATCTCTGTTAGCAAAACAGGTGTGGCGACTTTTTAAGCATCCTGATTTATTGGCCTCTAAAGTTATTAAAGGACAATATTCGACCCATGATTCATGGCTAACGGCCCCGCTTAAAGCCAATAGTTCAGTTTTCTGGAAAGGCTTTGTTTGGGCTCGTGAGTTGGTCACATTGGGCATTAGAAAACGTGTTGGGAATGGCAATTCCATTCGTTTTTTCAAGGATCCGTGGGTTCCCAAAGAGTTTTCATTTAAACCTTTAGCTCTCCAACATTCAGAAGTGCAAGACGATATGATGGTGGCTGATTTCATCATTTCGTCGGGAGGTTGGGATATGGAGAAGCTTACAAATGTGGTGATAGAGGAGGATGTTGTATTGATTCAGTCTATACCGATTGCAACTTCACGTAGTAGTGCAGAATCTGTCAATGAACCCATTGCGCAGAAGGGTGTTTCATGTGCGTATACAGATGCTGCCATCAAACCCAACAAGATAGGTGTTGGTGTTGGTGTGGTTGTACAGGACCATGAAGGCAAATTACAAGCTGCAATGTCGAAATTTGAATTTCGATCTTTGTCTCCTTTGGTGGCGGAGGTGCATGCAATTTTTAATGTTGTTCGTTTATTGACCCAATTGCAAACGAATGAGATTATCATATATTCAGATTCCCTCGTTGCAATTAGAATGATAAATCAAGAGCAAGAGACAGAATCAGAGGTGCACCATTGGATTTCACAAATCCAAGACATGAGTCAAAATTTTTCCAAGATGTCCTTTGTCCATGTTCGAAGACTTGGAAACAAGCGGGCCGATGCATTAGCCAAGCAAGCGCTTAGAGATTCACAATCTATGTTGTGGTTGTCTAATTTTCTATCATGGTTATTATCAATGGGAATTAATGCCCATTGCTAA

Coding sequence (CDS)

ATGGATTGTATCCGAACTGCATCTTGCTCTGTTCTGATTAATGGGTGTCCAACTGGTCAATTTTCACCCCAACGAGGTATAAGGCAGGGTGATTCTCTCTCTCCTTATCTATTTTTGCTTGTTTTGGATTCCCTTTCTTCCATGATTACAGGTGAAATGCGGCGGCGTAGATTGACGGGCCTTCGTCCGGGTGAATTCCGCTCCACTCTTGCTAATATATTACAAATGCCAGTGGTGGACAACCTGGGGTTGTATTTGGGAGTTCCCTCATTTTTTTCCCGTAAAAGAAGTGATGACTTCAGAGCTATCAAACAACGAGTTTGGCAAGCTTTGCAAGGTTGGAAGGGTAAATTATTCTCGATTGGGGGAAAGGAGGTGTTTATTAAAAGTGTAGCCCAAGCGATTCCCACCTATTTAATGAGTTGTTTCCGCCTACCTCAAATGGTCTGCAATGATATCCATAGAATGATGGCCAGGTTTTGGTGGGGCACCACTGAGACAAAGAAGAAAATGCATTGGAAGAAATGGGAGTTTTTATGTCTCCCAAAAGAGATGGGAGGTCTAAATTTTCGAGATTTGACTTGTTTTAACAGATCTCTGTTAGCAAAACAGGTGTGGCGACTTTTTAAGCATCCTGATTTATTGGCCTCTAAAGTTATTAAAGGACAATATTCGACCCATGATTCATGGCTAACGGCCCCGCTTAAAGCCAATAGTTCAGTTTTCTGGAAAGGCTTTGTTTGGGCTCGTGAGTTGGTCACATTGGGCATTAGAAAACGTGTTGGGAATGGCAATTCCATTCGTTTTTTCAAGGATCCGTGGGTTCCCAAAGAGTTTTCATTTAAACCTTTAGCTCTCCAACATTCAGAAGTGCAAGACGATATGATGGTGGCTGATTTCATCATTTCGTCGGGAGGTTGGGATATGGAGAAGCTTACAAATGTGGTGATAGAGGAGGATGTTGTATTGATTCAGTCTATACCGATTGCAACTTCACGTAGTAGTGCAGAATCTGTCAATGAACCCATTGCGCAGAAGGGTGTTTCATGTGCGTATACAGATGCTGCCATCAAACCCAACAAGATAGGTGTTGGTGTTGGTGTGGTTGTACAGGACCATGAAGGCAAATTACAAGCTGCAATGTCGAAATTTGAATTTCGATCTTTGTCTCCTTTGGTGGCGGAGGTGCATGCAATTTTTAATGTTGTTCGTTTATTGACCCAATTGCAAACGAATGAGATTATCATATATTCAGATTCCCTCGTTGCAATTAGAATGATAAATCAAGAGCAAGAGACAGAATCAGAGGTGCACCATTGGATTTCACAAATCCAAGACATGAGTCAAAATTTTTCCAAGATGTCCTTTGTCCATGTTCGAAGACTTGGAAACAAGCGGGCCGATGCATTAGCCAAGCAAGCGCTTAGAGATTCACAATCTATGTTGTGGTTGTCTAATTTTCTATCATGGTTATTATCAATGGGAATTAATGCCCATTGCTAA

Protein sequence

MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTGLRPGEFRSTLANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSIGGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCLPKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSVFWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFIISSGGWDMEKLTNVVIEEDVVLIQSIPIATSRSSAESVNEPIAQKGVSCAYTDAAIKPNKIGVGVGVVVQDHEGKLQAAMSKFEFRSLSPLVAEVHAIFNVVRLLTQLQTNEIIIYSDSLVAIRMINQEQETESEVHHWISQIQDMSQNFSKMSFVHVRRLGNKRADALAKQALRDSQSMLWLSNFLSWLLSMGINAHC
Homology
BLAST of Lcy04g003860 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.6e-29
Identity = 57/152 (37.50%), Postives = 88/152 (57.89%), Query Frame = 0

Query: 134 AIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCLPKE-MGGLNFRD 193
           A+P Y MSCFRL +++C  +   M  FWW + E K+K+ W  W+ LC  KE  GGL FRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 194 LTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSVFWKGFVWAREL 253
           L  FN++LLAKQ +R+   P  L S++++ +Y  H S +   +    S  W+  +  REL
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 254 VTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPL 285
           ++ G+ + +G+G   + + D W+  E    PL
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Lcy04g003860 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.5e-28
Identity = 83/260 (31.92%), Postives = 125/260 (48.08%), Query Frame = 0

Query: 88  VPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSIGGKEVFIKSVAQAIPTYLMSCFRLPQ 147
           +P    R   D F  I +RV   + GW+ K  S  G+    K+V  ++P + MS   LPQ
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 148 MVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCLPKEMGGLNFRDLTCFNRSLLAKQVWR 207
            + N + ++   F WG+T  KKK H  KW  +C PK+ GGL  R     NR+L++K  WR
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWR 120

Query: 208 LFKHPDLLASKVIKGQY---STHDSWLTAPLKANSSVFWKGFVWARELVTLGIRKRVGNG 267
           L +  + L + V++ +Y      DS    P  + SS +    +  R++V+ G+    G+G
Sbjct: 121 LLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDG 180

Query: 268 NSIRFFKDPWVPKEFSFKP-LALQHSEVQ---DDMMVADFIISSGGWDMEKL-----TNV 327
             IRF+ D WV    S KP L L + E     D ++  D  I   GWD  K+      N 
Sbjct: 181 QQIRFWTDRWV----SGKPLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNT 240

Query: 328 VIEEDVVLIQSIPIATSRSS 336
            +E   V++  +  A  R S
Sbjct: 241 RLELRAVVLDLVTGARDRLS 256

BLAST of Lcy04g003860 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-06
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 12 LINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTGLR 63
          +ING P G  +P RG+RQGD LSPYLF+L  + LS +      + RL G+R
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIR 63

BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A803P9M1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.2e-79
Identity = 168/433 (38.80%), Postives = 238/433 (54.97%), Query Frame = 0

Query: 1    MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
            M C+ + S S LING   G+  P+RG+RQGD LSP+LFL   ++ S++I  E   RR+ G
Sbjct: 814  MRCVTSVSFSFLINGDIKGKVIPERGLRQGDPLSPFLFLFCAEAFSNLIQHEELERRMRG 873

Query: 61   LRPGEFRSTLANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFS 120
            L+ G  R  L+       V+N G YLG+PSF  R + +    IK +VW  ++GWK  +FS
Sbjct: 874  LQFG--RRGLS-------VENHGKYLGLPSFVGRNKKEFLDQIKNKVWAKMKGWKSSIFS 933

Query: 121  IGGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLC 180
            + GKEV IK+V QAI TY MSCFRL +   + IHRM ARFWWG+++  KK+HW KW  LC
Sbjct: 934  MAGKEVLIKAVVQAILTYAMSCFRLSKKTISSIHRMAARFWWGSSDKDKKIHWCKWAQLC 993

Query: 181  LPKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSS 240
             PK+ GGL FRDL  FN++LLAKQVWR  ++P+ L S+V+K  Y  + S L      ++S
Sbjct: 994  KPKDKGGLGFRDLGFFNQALLAKQVWRCIRYPNNLCSRVLKASYFPNKSILETKCGVHAS 1053

Query: 241  VFWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADF 300
              W+  +W ++++  G R RVGNG ++R  +DPW+P+  +FK        + +++ VAD 
Sbjct: 1054 FVWRSLMWGKKVIVNGYRWRVGNGENVRVLEDPWLPRPVTFK--IYDKPPLSENLFVADL 1113

Query: 301  IISSGGWDMEKLTNVVIEEDVVLIQSIP-------------------------------- 360
             +  G WD + +  V   ED  LI S+P                                
Sbjct: 1114 KLVDGSWDKDFIRAVFNMEDAELILSMPSMGNNVVHGGAAPIAGDMVDWCKNYLVEFQGG 1173

Query: 361  --IATSRSSAESVNEPIAQKGVSCAYTDAAIKPNKIGVGVGVVVQDHEGKLQAAMSKFEF 400
              I  SR+  E+      + G      DA +K    GVG+G V +D  G+ Q A S    
Sbjct: 1174 GDIKGSRNQHETSKWGAHEMGRVKINVDAGVKGGG-GVGIGCVARDSRGRSQFASSIVIN 1233

BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A803NHG3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76
Identity = 153/362 (42.27%), Postives = 196/362 (54.14%), Query Frame = 0

Query: 1    MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
            M C+ + + S LING   G+  PQRGIRQGD LSP+LFL   +  S ++  E    +L G
Sbjct: 1070 MACVTSVTFSFLINGEIQGKVVPQRGIRQGDPLSPFLFLFCAEVFSCLLQREEAGNQLVG 1129

Query: 61   LRPGE----------------------------------FRSTLANILQMPVVDNLGLYL 120
            +R G                                    +  LA  L + VVDN G YL
Sbjct: 1130 VRFGRQGLAVSHLFFADDSMIFFDPTWEACQRFNTLLTATKLELAEFLGVKVVDNHGKYL 1189

Query: 121  GVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSIGGKEVFIKSVAQAIPTYLMSCFRLP 180
            G+ S   R +   F  IK RVW  L+GWKG +FS+G KEV IK++ QAIP Y MSC+RL 
Sbjct: 1190 GLLSLVGRNKKQVFDVIKNRVWNRLRGWKGHMFSMGVKEVLIKAIVQAIPAYTMSCYRLT 1249

Query: 181  QMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCLPKEMGGLNFRDLTCFNRSLLAKQVW 240
            +     IHRM ARFWWG+T  KKK+HW KWE+LC PKE GGL FRDL  FN++LLAKQ+W
Sbjct: 1250 KSTITSIHRMAARFWWGSTAKKKKIHWCKWEYLCRPKEEGGLGFRDLELFNQALLAKQIW 1309

Query: 241  RLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSVFWKGFVWARELVTLGIRKRVGNGNS 300
            R  + P  L SKV+K  Y  H S L A   A++S  W+  VW +E++  G R RVGNG  
Sbjct: 1310 RCLRQPGSLCSKVLKASYFPHKSVLAAKCGAHASFVWRSLVWGKEIILKGYRWRVGNGQQ 1369

Query: 301  IRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFIISSGGWDMEKLTNVVIEEDVVLIQS 329
            +R  +DPW+P+  SFK            + V D    SG WD   +      ED  +I  
Sbjct: 1370 VRVLEDPWLPRPTSFK--VYDKPPFPQQLCVVDLTHPSGVWDESFIRANFNREDAEMILR 1429

BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76
Identity = 151/387 (39.02%), Postives = 210/387 (54.26%), Query Frame = 0

Query: 1    MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
            M C+ + S S LING   G+  P+RG+RQGD LSP+LFL   ++ SS+I  E R  RL+G
Sbjct: 909  MRCVSSTSFSFLINGEIKGKLIPERGLRQGDPLSPFLFLFCAEAFSSLIQYEERAGRLSG 968

Query: 61   LRPG-------------------------------------------------------- 120
            +R G                                                        
Sbjct: 969  IRFGRQGVSISHLFFADVSLIFIDANVDSCHQFQQLLSKYTAASGQLVNYHKSEACFGRN 1028

Query: 121  ---EFRSTLANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSI 180
               E RS LA IL +  V+N G YLG+PSF  R + +    IK +VW  ++GWK  +FS+
Sbjct: 1029 VTAEVRSLLAGILGVREVENHGKYLGLPSFVGRNKREFLDEIKNKVWAKMKGWKTSMFSV 1088

Query: 181  GGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCL 240
             GKEV IK++ QAIPTY MSCF+LP+   + +HRM +RFWWG+++ +KK+HW KW +LC 
Sbjct: 1089 AGKEVLIKAIVQAIPTYTMSCFKLPKKTISSLHRMASRFWWGSSDKEKKIHWCKWRYLCR 1148

Query: 241  PKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSV 300
            PK+ GGL FRDL  FN++LLAKQ+WR  +HP LL S+V+K  Y      L A   AN+S 
Sbjct: 1149 PKDKGGLGFRDLGMFNQALLAKQIWRCLRHPQLLCSRVLKASYFPRKGVLEAGCGANASF 1208

Query: 301  FWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFI 329
              +  VW ++L+  G R RVGNG S+R  +DPW+P+  +FK        +  ++ V D  
Sbjct: 1209 VSRSLVWGKKLILKGYRWRVGNGESVRVLEDPWLPRPVTFK--VYDQPSLPANLYVTDLK 1268

BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A803PS58 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.8e-74
Identity = 174/565 (30.80%), Postives = 265/565 (46.90%), Query Frame = 0

Query: 1    MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
            M C+RT S S ++NG  TG   P RG+RQG  LSPYLFL+  ++LS ++  E    RL G
Sbjct: 691  MSCLRTNSFSFILNGEVTGSLLPSRGLRQGCPLSPYLFLICSEALSRLLQHEEATGRLNG 750

Query: 61   LR-----------------------------------------PGEFRSTLANI------ 120
             +                                          G+  +T  ++      
Sbjct: 751  FKLTRHAPSVSHLFFADDSLLFCQANESSYLAIQRSLDIYHRTSGQVLNTDKSVMSFSPN 810

Query: 121  ------------LQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSI 180
                        L+MP+ +    YLG+PS+  R +   F  IK+++W+ +  W  K+FS 
Sbjct: 811  TTLASQVFFHRQLRMPICECHERYLGLPSYSGRDKKRMFSDIKEKIWRLMHSWSEKIFSA 870

Query: 181  GGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCL 240
            GG+EV +K+V Q+IPTY MSCFRLP   CN +  MMA FWWG  E   K+HW+ W+ +C 
Sbjct: 871  GGREVLLKAVVQSIPTYAMSCFRLPAYFCNQLESMMANFWWGLNENGNKVHWRSWKLMCK 930

Query: 241  PKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSV 300
             K+ GG+  R    FN+++LAKQ WRL K PD L +KV+K +Y  ++S+L A L  + S+
Sbjct: 931  RKDSGGMGSRSFMHFNQAMLAKQAWRLLKQPDSLLAKVLKSRYYPNNSFLQATLGHSPSL 990

Query: 301  FWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFI 360
             W+G  W R L++ G+R ++G G  I+   DPW P + +F+P    H     DM+V++ I
Sbjct: 991  TWQGIHWGRSLLSAGLRWKIGEGCRIKCADDPWKPGQSTFRP---YHFSGPPDMVVSNLI 1050

Query: 361  ISSGGWDMEKLTNVVIEEDVVLIQSIPIATSRSSAESVNEPIA--------QKGVSCA-- 420
                 WD+  L       D      I     R+SA S + P          Q+ +S A  
Sbjct: 1051 TEERQWDLALLQQWFSPPDNYCKNFISAQLKRTSAASASTPSTFATAVVPLQQSISSAAL 1110

Query: 421  -------------YTDAAIKPNKIGVGVGVVVQDHEGKLQAAMSKFEFRSLSPLVAEVHA 480
                           DAA+  ++   GVG +++  +G + AA SK      +    E  A
Sbjct: 1111 LPWTPPPPGLLKLNVDAAVDSSRKITGVGALIRRTDGSVAAAFSKPVLGCFASHEMEAIA 1170

Query: 481  IFNVVRLLTQLQTNEIIIYSDSLVAIRMINQEQETESEVHHWISQIQDMSQNFSKMSFVH 484
            +F+ +    QL     +I +D+L  +  + +     S     +  I  +   F  ++  H
Sbjct: 1171 MFHSLSWALQLHLPVTLIETDALKVVNALCKSSSAISSFQDLVVDISSLLSFFPNVNVSH 1230

BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A2N9I239 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45945 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.6e-73
Identity = 145/349 (41.55%), Postives = 207/349 (59.31%), Query Frame = 0

Query: 1    MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
            M+C+RT S SVLING P G F+P RG+RQGD +SPYLFLL  + L +++    + +++ G
Sbjct: 936  MECVRTVSYSVLINGDPKGFFNPSRGLRQGDPISPYLFLLCAEGLQALLAHTAQAKKIQG 995

Query: 61   LRPGEFRSTL--------------ANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQR 120
            L       TL              AN+     +     YLG+PS   R ++  F  +K+R
Sbjct: 996  LSISRGGPTLTHLFFADDSVLFCRANLSDCHAIQEYDKYLGLPSLVGRSKNATFAHLKER 1055

Query: 121  VWQALQGWKGKLFSIGGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTE 180
            VW  +QGWK +L S  G+EV IK+V QAIPTY M+CF+LP+ +C ++ R++  FWWG TE
Sbjct: 1056 VWTKMQGWKERLLSQAGREVLIKAVIQAIPTYTMNCFKLPKKLCLELERLIRNFWWGHTE 1115

Query: 181  TKKKMHWKKWEFLCLPKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYST 240
            + +K+HW KW  LC PK MGG+ FRDL  FN +LLAKQVWRL  +   L  KV K +Y  
Sbjct: 1116 SSRKVHWVKWSSLCQPKSMGGMGFRDLAKFNDALLAKQVWRLVHNKTSLLYKVFKAKYFP 1175

Query: 241  HDSWLTAPLKANSSVFWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLAL 300
              + + A   A++S  WK    AR ++  G R RVGNGNSIR ++D W+P   +  P+  
Sbjct: 1176 RSTIMEARCPASASFAWKSICQARHVIRKGARWRVGNGNSIRVWQDRWIPIPSAGVPVT- 1235

Query: 301  QHSEVQDDMMVADFI-ISSGGWDMEKLTNVVIEEDVVLIQSIPIATSRS 335
              +E+ +D  V+  I + +G W+ E +  + I  +  LI S  I +SR+
Sbjct: 1236 PLNELPEDARVSSLIQVGTGLWNQELVERIFIPSEASLILS-TILSSRA 1282

BLAST of Lcy04g003860 vs. NCBI nr
Match: XP_030479133.1 (uncharacterized protein LOC115696372 [Cannabis sativa])

HSP 1 Score: 281.2 bits (718), Expect = 1.8e-71
Identity = 147/389 (37.79%), Postives = 206/389 (52.96%), Query Frame = 0

Query: 1   MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
           M C+ T   S  ING   G  +P RG+RQGD LSPYLFL+  + LS ++  E +  RL G
Sbjct: 571 MSCLHTNVFSFNINGEVMGSVTPPRGLRQGDPLSPYLFLICSEGLSRLLQYEEQIGRLKG 630

Query: 61  L----------------------------------------------------------- 120
           L                                                           
Sbjct: 631 LAVSRHSPSISHLFFADDSLLFCQANDRSCGAIKRALDIYHRASGQRLNADKSVMSFSPN 690

Query: 121 RPGEFRSTLANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSI 180
            P   +++   IL MP+ +    YLG+P++  R +S  F  IK+++W+ +  W  K+FSI
Sbjct: 691 TPIAVQNSFQQILGMPICECHEAYLGLPAYSERDKSQLFSNIKEKIWKLMHAWNDKIFSI 750

Query: 181 GGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCL 240
           GGKEV +K+V Q+IPTY MSCFRLP  +CN+I  MMA+FWWG++   KK+HWKKW FLC 
Sbjct: 751 GGKEVLLKAVVQSIPTYAMSCFRLPVKLCNEIEAMMAKFWWGSSSDNKKIHWKKWRFLCK 810

Query: 241 PKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSV 300
            K  GG+ FR    FN++LLAKQ WR+F+ P  L S+V+KG Y + + ++TA     SS+
Sbjct: 811 SKGDGGMGFRSFVHFNQALLAKQAWRIFQDPTSLLSRVLKGHYFSQNDFMTARGGGLSSL 870

Query: 301 FWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFI 331
            W+G VW REL+  G+R +VG GN+IR   D W+P    FKP     +       VAD+I
Sbjct: 871 TWQGIVWGRELLVKGLRLKVGTGNNIRCAVDSWIPGHKGFKPYCYTGAHTNH---VADYI 930

BLAST of Lcy04g003860 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])

HSP 1 Score: 279.3 bits (713), Expect = 6.7e-71
Identity = 147/389 (37.79%), Postives = 203/389 (52.19%), Query Frame = 0

Query: 1    MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
            M C+ T S S LING  +G   PQRG+RQGD LSPYLFL+  + LS ++  E +  RL G
Sbjct: 621  MTCLHTNSFSFLINGEVSGSVIPQRGLRQGDPLSPYLFLICSEGLSRLLQHEEQIGRLQG 680

Query: 61   L----------------------------------------------------------- 120
            L                                                           
Sbjct: 681  LAVSRHSPSITHLLFADDSLLFCQANDRSCGSIKRALDVYHRASGQLLNTDKSVMSFSPN 740

Query: 121  RPGEFRSTLANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSI 180
             P   + +   IL MP+      YLG+P++  R +S  F  IK+R+W+ +  W  K+FSI
Sbjct: 741  TPEAVKLSFQQILGMPICACHESYLGLPAYSERDKSQLFNNIKERIWKLMHAWSDKIFSI 800

Query: 181  GGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCL 240
            GGKEV +K+V QAIPTY MSCFRL    C  I  MMARFWWG++   KK+HWK W+ LC 
Sbjct: 801  GGKEVLLKAVVQAIPTYAMSCFRLSAKFCKQIETMMARFWWGSSTDNKKIHWKNWKSLCT 860

Query: 241  PKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSV 300
             K  GGL FR    FN++ LAKQ WR+F+ P+ L S+V+KG+Y   + ++TA +   SS+
Sbjct: 861  SKRDGGLGFRSFVHFNQAFLAKQAWRIFQTPNSLLSRVLKGRYYHQNDFMTAKVSGLSSL 920

Query: 301  FWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFI 331
             W+G VW REL++ G+  ++G+G  +    D W+P    FKPL    S      +VAD+I
Sbjct: 921  TWQGIVWGRELLSKGLIIKIGDGTGVNCAHDSWIPGNEYFKPLRFTGS---CSNLVADYI 980

BLAST of Lcy04g003860 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-07
Identity = 43/144 (29.86%), Postives = 72/144 (50.00%), Query Frame = 0

Query: 354  DAAIKPNKIGVGVGVVVQDHEGKLQAAMSKFEFRSLSPLVAEVHAIFNVVRLLTQLQTNE 413
            DAA+  ++  +G+GV+++D  G++ AAMSK    +      E  A+F  ++   QLQ   
Sbjct: 1226 DAALDSSRNKIGIGVIIRDSTGRVIAAMSKPVVGNFKSQEMEAKAMFWGLQWAKQLQLQP 1285

Query: 414  IIIYSDSLVAIRMINQEQETESEVHHWISQIQDMSQNFSKMSFVHVRRLGNKRADALAKQ 473
              + +D L+ +  +  +Q   S  H  +  I     +FS     HVRR  N+ A  LAKQ
Sbjct: 1286 HCVETDCLMLVHALQGKQSQLSSFHDLVEDISYHLSSFSNACISHVRRDANQAAHGLAKQ 1345

Query: 474  ALRDSQSMLWLSNFLSWLLSMGIN 498
            AL+     +W+    S + S+ +N
Sbjct: 1346 ALQLDNDCIWIEEIPSTIFSVVVN 1369


HSP 2 Score: 279.3 bits (713), Expect = 6.7e-71
Identity = 139/368 (37.77%), Postives = 205/368 (55.71%), Query Frame = 0

Query: 1    MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
            M C+ + S SVLING P G   P+RG+RQG  LSPYLF+L  ++LS+++    + + + G
Sbjct: 670  MRCVTSTSFSVLINGVPKGMIQPERGLRQGCPLSPYLFILCAEALSNLLVVAEQNQLIRG 729

Query: 61   LR-------------------------------PGEFRSTLANILQMPVVDNLGLYLGVP 120
            L+                               P   R+ +  I  + VV     YLG+P
Sbjct: 730  LKFARDVSITHLLFADDSLIFSRASVAECSGKIPEHQRAAIRGIFNLNVVSKHEKYLGLP 789

Query: 121  SFFSRKRSDDFRAIKQRVWQALQGWKGKLFSIGGKEVFIKSVAQAIPTYLMSCFRLPQMV 180
            S   RK+   F  IK +V   + GW+ K  S GGKEV IK+ AQAIP Y MS F+LP+  
Sbjct: 790  SMIGRKKMGFFNDIKLKVLNKIAGWQQKFLSSGGKEVLIKAAAQAIPAYAMSVFKLPRGF 849

Query: 181  CNDIHRMMARFWWGTTETKKKMHWKKWEFLCLPKEMGGLNFRDLTCFNRSLLAKQVWRLF 240
            C+DI R +A+FWWG+   K+ +HW+KWE L   K  GGL FR+ +CFN++L+AKQ WRL 
Sbjct: 850  CDDIQRAIAKFWWGSKGDKRGIHWRKWEKLSQAKIRGGLGFREFSCFNQALVAKQAWRLL 909

Query: 241  KHPDLLASKVIKGQYSTHDSWLTAPLKANSSVFWKGFVWARELVTLGIRKRVGNGNSIRF 300
            ++P+ L S+V++ +Y  + S+L A   AN+S  W+  +W R+++  G+R R+GNG  I  
Sbjct: 910  QYPNSLVSRVLQARYFRNSSFLCAKAGANASYIWRSIMWGRQVIKKGMRWRIGNGKKIAI 969

Query: 301  FKDPWVPKEFSFKPLALQHSEVQDDMMVADFIISSGGWDMEKLTNVVIEEDVVLIQSIPI 338
            F D W+P+  +F+P+      V    +VAD I +   WD  KL    ++ D   I  IP+
Sbjct: 970  FSDNWLPRPETFRPIFPLSLPVSS--VVADLIKADNQWDEIKLRQHFLDVDTAEILKIPL 1029

BLAST of Lcy04g003860 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-05
Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 0

Query: 354  DAAIKPNKIGVGVGVVVQDHEGKLQAAMSKFEFRSLSPLVAEVHAIFNVVRLLTQLQTNE 413
            DAA     +  GVG V++D  GK+ AA         S  +AE  A+   ++L      + 
Sbjct: 1247 DAAFNSKNLSAGVGAVIRDSNGKIVAAGVNQNLLKGSASLAEAEAVLWGLQLARNADVSS 1306

Query: 414  IIIYSDSLVAIRMINQEQETESEVHHWISQIQDMSQNFSKMSFVHVRRLGNKRADALAKQ 473
            +II SD L  ++++N  + + SE+   I  IQ+  + F K+   H+ R  N  A  LAK 
Sbjct: 1307 LIIESDCLEVVQLVNNTKGSRSEIFWTILAIQNQMKIFQKVVVNHIPRHCNACAHYLAKI 1366

Query: 474  ALRDSQSMLWLSN 487
            AL      +WL N
Sbjct: 1367 ALGKISPCMWLGN 1379


HSP 2 Score: 279.3 bits (713), Expect = 6.7e-71
Identity = 147/416 (35.34%), Postives = 215/416 (51.68%), Query Frame = 0

Query: 1   MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
           M C+ T S S  +NG   G   PQRG+RQGD LSPYLFL+  + LS ++  E +  RL G
Sbjct: 352 MRCLHTTSFSFNLNGSVVGSLIPQRGLRQGDPLSPYLFLICSEGLSRLLQYEEKVGRLKG 411

Query: 61  L----------------------------------------------------------- 120
                                                                       
Sbjct: 412 YAVSRRAPTISHLFFADDSLLFCQADDRSCGSIKRALDIYHRASGQELNLDKSVMSFSPN 471

Query: 121 RPGEFRSTLANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSI 180
            P   + +  NIL MP+ D    YLG+P++  R +   F  IK+R+W+ +  W  KLFSI
Sbjct: 472 TPSHVQHSFQNILGMPISDCHEKYLGLPAYSERDKKQLFADIKERIWKLMNSWNDKLFSI 531

Query: 181 GGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCL 240
           GGKEV +K+V Q+IPTY+MSCF+LP    + + +MMA FWWG+ + KKK HW+KW+ LC 
Sbjct: 532 GGKEVLLKAVVQSIPTYVMSCFKLPSTFSHQLEQMMANFWWGSDKDKKKTHWRKWKLLCK 591

Query: 241 PKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSV 300
            K  GG+ FR    FN++LLAKQ WR+ + P  L S+V+KG+Y +H+ +L AP    SS+
Sbjct: 592 TKMDGGMGFRSFIHFNQALLAKQAWRIIQFPHSLLSRVLKGRYFSHNDFLQAPKTGCSSL 651

Query: 301 FWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFI 352
            W+G  W R+L+  G+R ++G+G+S++   DPW+P+   F P+     + Q+  +V+ +I
Sbjct: 652 TWQGICWGRDLLVKGLRLKIGDGSSVQCISDPWIPRHSEFTPICFL-GDTQN--LVSYYI 711

BLAST of Lcy04g003860 vs. NCBI nr
Match: AFP55557.1 (non-ltr retroelement reverse transcriptase [Rosa rugosa])

HSP 1 Score: 276.9 bits (707), Expect = 3.3e-70
Identity = 141/392 (35.97%), Postives = 213/392 (54.34%), Query Frame = 0

Query: 1    MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTG 60
            MDC+++ + SVL+ G P G+  P RG+RQGD +SPYLFL+V + LS++I    R +++ G
Sbjct: 895  MDCVKSVTYSVLLQGAPFGKIKPSRGLRQGDPISPYLFLIVAEGLSALIRKAEREQQIHG 954

Query: 61   L----------------------------------------------------------- 120
            +                                                           
Sbjct: 955  VAIARGAPSVSHLFYADDSLLFCDATVTDCMALKNIFSTYEAASGQKINKDKSAICFSPK 1014

Query: 121  RPGEFRSTLANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSI 180
             P   +   + IL MPVV     YLG+P+   + +   F+++  RVW  + GW+GKL S 
Sbjct: 1015 SPAAIKEACSAILDMPVVPCHERYLGLPTVSGKDKKKLFQSLPDRVWNRVHGWEGKLLSK 1074

Query: 181  GGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCL 240
             GKEV IK+VAQAIP Y MS F+LP    + I++ +ARFWWG  E  K +HW++W  LC 
Sbjct: 1075 AGKEVLIKTVAQAIPNYTMSVFQLPAGTSDAINKCVARFWWG-KEGGKGIHWRRWSDLCF 1134

Query: 241  PKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSV 300
             K+ GGL FRDL+ FN++LL KQ WRL  +PD L ++++K +Y   D ++ A L ++ S 
Sbjct: 1135 SKKDGGLGFRDLSLFNQALLGKQGWRLMMYPDSLVARMLKAKYFPWDDFMEAELGSSPSY 1194

Query: 301  FWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFI 334
             W+ F+W REL+  G+R R+G+G  +R F DPWVP   SF+P+  Q + +   + V+D +
Sbjct: 1195 LWRSFLWGRELLRKGVRWRIGDGKEVRVFIDPWVPGLPSFRPILRQGAPL--FLRVSDLL 1254

BLAST of Lcy04g003860 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-32
Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = 0

Query: 134 AIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCLPKEMGGLNFRDL 193
           A+PTY M+CF LP+ VC  I  ++A FWW   +  K MHWK W+ L   K  GG+ F+D+
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 194 TCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSVFWKGFVWARELV 253
             FN +LL KQ+WR+   P+ L +KV K +Y      L APL +  S  WK    ++E++
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121

Query: 254 TLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQ------HSEVQDDMMVADFIISSG 306
             G R  VGNG  I  ++  W+  + +   L +Q      ++ V   + V+D I  SG
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG 179

BLAST of Lcy04g003860 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 130.2 bits (326), Expect = 4.7e-30
Identity = 57/152 (37.50%), Postives = 88/152 (57.89%), Query Frame = 0

Query: 134 AIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCLPKE-MGGLNFRD 193
           A+P Y MSCFRL +++C  +   M  FWW + E K+K+ W  W+ LC  KE  GGL FRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 194 LTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSVFWKGFVWAREL 253
           L  FN++LLAKQ +R+   P  L S++++ +Y  H S +   +    S  W+  +  REL
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 254 VTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPL 285
           ++ G+ + +G+G   + + D W+  E    PL
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Lcy04g003860 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-07
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 12 LINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTGLR 63
          +ING P G  +P RG+RQGD LSPYLF+L  + LS +      + RL G+R
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIR 63

BLAST of Lcy04g003860 vs. TAIR 10
Match: AT3G25720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-07
Identity = 38/115 (33.04%), Postives = 51/115 (44.35%), Query Frame = 0

Query: 179 LCLPKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIK-------GQYSTHDSWL 238
           +CLPK  GGL  R  + +N +L  K VWRLF     L     +       G  S    W 
Sbjct: 18  VCLPKAEGGLGLRWFSEWNTTLNLKLVWRLFSGGGSLWVDWHRYHHLQGLGDASVSKFWT 77

Query: 239 TAPLKANSSVFWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLAL 287
           +  L  + S  WK  +  R L    +R  +GNG + RF+ D W P    F PL +
Sbjct: 78  SQEL-VSDSWNWKCLLRLRPLAERFLRCNIGNGLTARFWTDNWTP----FGPLLI 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P932956.6e-2937.50Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
P0C2F62.5e-2831.92Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
P925551.6e-0649.02Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A803P9M14.2e-7938.80Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NHG31.2e-7642.27Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q1K61.2e-7639.02Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PS581.8e-7430.80Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9I2391.6e-7341.55RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45945 ... [more]
Match NameE-valueIdentityDescription
XP_030479133.11.8e-7137.79uncharacterized protein LOC115696372 [Cannabis sativa][more]
XP_030497600.16.7e-7137.79uncharacterized protein LOC115713257 [Cannabis sativa][more]
XP_030497600.13.1e-0729.86uncharacterized protein LOC115713257 [Cannabis sativa][more]
XP_024950112.11.3e-0531.58uncharacterized protein LOC112496847 [Citrus sinensis][more]
AFP55557.13.3e-7035.97non-ltr retroelement reverse transcriptase [Rosa rugosa][more]

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Match NameE-valueIdentityDescription
AT4G29090.12.2e-3237.08Ribonuclease H-like superfamily protein [more]
ATMG00310.14.7e-3037.50RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
ATMG01250.11.1e-0749.02RNA-directed DNA polymerase (reverse transcriptase) [more]
AT3G25720.11.9e-0733.04RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 350..481
e-value: 3.7E-23
score: 84.0
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 355..474
e-value: 1.4E-20
score: 73.4
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 345..476
score: 10.973784
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 67..339
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 67..339
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 352..472
e-value: 1.29921E-15
score: 71.1912
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 350..480

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g003860.1Lcy04g003860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity