
Lcy04g003860 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTGTATCCGAACTGCATCTTGCTCTGTTCTGATTAATGGGTGTCCAACTGGTCAATTTTCACCCCAACGAGGTATAAGGCAGGGTGATTCTCTCTCTCCTTATCTATTTTTGCTTGTTTTGGATTCCCTTTCTTCCATGATTACAGGTGAAATGCGGCGGCGTAGATTGACGGGCCTTCGTCCGGGTAAGCTATGTCCGGATATATCCCATTTATTTTTCGCCGATGACAGTCTCATCTTTTGTAAGGCGAAAATAGAAGAAGTTTGGACTTTCCGGATGATTCTAGAAAGGTATGAAAAAGCTTCGGGACAGCGAGTAAACTACAATAAGTCATCAATGGTTTTCTCACCTAATGTGTCAGGTGAATTCCGCTCCACTCTTGCTAATATATTACAAATGCCAGTGGTGGACAACCTGGGGTTGTATTTGGGAGTTCCCTCATTTTTTTCCCGTAAAAGAAGTGATGACTTCAGAGCTATCAAACAACGAGTTTGGCAAGCTTTGCAAGGTTGGAAGGGTAAATTATTCTCGATTGGGGGAAAGGAGGTGTTTATTAAAAGTGTAGCCCAAGCGATTCCCACCTATTTAATGAGTTGTTTCCGCCTACCTCAAATGGTCTGCAATGATATCCATAGAATGATGGCCAGGTTTTGGTGGGGCACCACTGAGACAAAGAAGAAAATGCATTGGAAGAAATGGGAGTTTTTATGTCTCCCAAAAGAGATGGGAGGTCTAAATTTTCGAGATTTGACTTGTTTTAACAGATCTCTGTTAGCAAAACAGGTGTGGCGACTTTTTAAGCATCCTGATTTATTGGCCTCTAAAGTTATTAAAGGACAATATTCGACCCATGATTCATGGCTAACGGCCCCGCTTAAAGCCAATAGTTCAGTTTTCTGGAAAGGCTTTGTTTGGGCTCGTGAGTTGGTCACATTGGGCATTAGAAAACGTGTTGGGAATGGCAATTCCATTCGTTTTTTCAAGGATCCGTGGGTTCCCAAAGAGTTTTCATTTAAACCTTTAGCTCTCCAACATTCAGAAGTGCAAGACGATATGATGGTGGCTGATTTCATCATTTCGTCGGGAGGTTGGGATATGGAGAAGCTTACAAATGTGGTGATAGAGGAGGATGTTGTATTGATTCAGTCTATACCGATTGGTGGGCGAAATGAGGAAGATATTTGGATATGGCACTATACACGGCACGGTGAATATTCTACTAAGAGTGGATATAAGCTAGAAGTGAAGTCTAATTTCAATCGAGCATCTTCGAGTACCAATGCACAAAGTTCTTGGTGGAATCTTTTATGGAAAACTAAAGTACCATGAAAGATTAAATTATTCATTTGGAAAGCATATCATGATTGTTTACCAACAAATTTTTGTCTTTGGAGGCGGGGTATGGATGTGTCGAATTTGTGCAACTTTTGCCGATGTGAGCAAGAAAGTGTTGATCATGCTTTGTGTGGGTGCAAGAGGTCCAAGAAGATCTGTAACTCGCTTTTCCCACGAGAGGACTCTGAAATCAAGGTTGCTAATAATTTTGCTGACAGAATGTTAAGACTAGCAGATCGACTTAGTACAGAGGAGTTTGAGAAACTATGTATAACGTTATGGGCAATTTGGAATGATAGGAATAGTTTCCTTCTGGGCAGTCCCATTATGGAGTGGCAAGCAAGATGCGAATGGATCCAGCAGTAATGGGAAGAAATTAGGCGGCCAAATGTTAATGCAGCAACTTCACGTAGTAGTGCAGAATCTGTCAATGAACCCATTGCGCAGAAGGGTGTTTCATGTGCGTATACAGATGCTGCCATCAAACCCAACAAGATAGGTGTTGGTGTTGGTGTGGTTGTACAGGACCATGAAGGCAAATTACAAGCTGCAATGTCGAAATTTGAATTTCGATCTTTGTCTCCTTTGGTGGCGGAGGTGCATGCAATTTTTAATGTTGTTCGTTTATTGACCCAATTGCAAACGAATGAGATTATCATATATTCAGATTCCCTCGTTGCAATTAGAATGATAAATCAAGAGCAAGAGACAGAATCAGAGGTGCACCATTGGATTTCACAAATCCAAGACATGAGTCAAAATTTTTCCAAGATGTCCTTTGTCCATGTTCGAAGACTTGGAAACAAGCGGGCCGATGCATTAGCCAAGCAAGCGCTTAGAGATTCACAATCTATGTTGTGGTTGTCTAATTTTCTATCATGGTTATTATCAATGGGAATTAATGCCCATTGCTAA ATGGATTGTATCCGAACTGCATCTTGCTCTGTTCTGATTAATGGGTGTCCAACTGGTCAATTTTCACCCCAACGAGGTATAAGGCAGGGTGATTCTCTCTCTCCTTATCTATTTTTGCTTGTTTTGGATTCCCTTTCTTCCATGATTACAGGTGAAATGCGGCGGCGTAGATTGACGGGCCTTCGTCCGGGTGAATTCCGCTCCACTCTTGCTAATATATTACAAATGCCAGTGGTGGACAACCTGGGGTTGTATTTGGGAGTTCCCTCATTTTTTTCCCGTAAAAGAAGTGATGACTTCAGAGCTATCAAACAACGAGTTTGGCAAGCTTTGCAAGGTTGGAAGGGTAAATTATTCTCGATTGGGGGAAAGGAGGTGTTTATTAAAAGTGTAGCCCAAGCGATTCCCACCTATTTAATGAGTTGTTTCCGCCTACCTCAAATGGTCTGCAATGATATCCATAGAATGATGGCCAGGTTTTGGTGGGGCACCACTGAGACAAAGAAGAAAATGCATTGGAAGAAATGGGAGTTTTTATGTCTCCCAAAAGAGATGGGAGGTCTAAATTTTCGAGATTTGACTTGTTTTAACAGATCTCTGTTAGCAAAACAGGTGTGGCGACTTTTTAAGCATCCTGATTTATTGGCCTCTAAAGTTATTAAAGGACAATATTCGACCCATGATTCATGGCTAACGGCCCCGCTTAAAGCCAATAGTTCAGTTTTCTGGAAAGGCTTTGTTTGGGCTCGTGAGTTGGTCACATTGGGCATTAGAAAACGTGTTGGGAATGGCAATTCCATTCGTTTTTTCAAGGATCCGTGGGTTCCCAAAGAGTTTTCATTTAAACCTTTAGCTCTCCAACATTCAGAAGTGCAAGACGATATGATGGTGGCTGATTTCATCATTTCGTCGGGAGGTTGGGATATGGAGAAGCTTACAAATGTGGTGATAGAGGAGGATGTTGTATTGATTCAGTCTATACCGATTGCAACTTCACGTAGTAGTGCAGAATCTGTCAATGAACCCATTGCGCAGAAGGGTGTTTCATGTGCGTATACAGATGCTGCCATCAAACCCAACAAGATAGGTGTTGGTGTTGGTGTGGTTGTACAGGACCATGAAGGCAAATTACAAGCTGCAATGTCGAAATTTGAATTTCGATCTTTGTCTCCTTTGGTGGCGGAGGTGCATGCAATTTTTAATGTTGTTCGTTTATTGACCCAATTGCAAACGAATGAGATTATCATATATTCAGATTCCCTCGTTGCAATTAGAATGATAAATCAAGAGCAAGAGACAGAATCAGAGGTGCACCATTGGATTTCACAAATCCAAGACATGAGTCAAAATTTTTCCAAGATGTCCTTTGTCCATGTTCGAAGACTTGGAAACAAGCGGGCCGATGCATTAGCCAAGCAAGCGCTTAGAGATTCACAATCTATGTTGTGGTTGTCTAATTTTCTATCATGGTTATTATCAATGGGAATTAATGCCCATTGCTAA ATGGATTGTATCCGAACTGCATCTTGCTCTGTTCTGATTAATGGGTGTCCAACTGGTCAATTTTCACCCCAACGAGGTATAAGGCAGGGTGATTCTCTCTCTCCTTATCTATTTTTGCTTGTTTTGGATTCCCTTTCTTCCATGATTACAGGTGAAATGCGGCGGCGTAGATTGACGGGCCTTCGTCCGGGTGAATTCCGCTCCACTCTTGCTAATATATTACAAATGCCAGTGGTGGACAACCTGGGGTTGTATTTGGGAGTTCCCTCATTTTTTTCCCGTAAAAGAAGTGATGACTTCAGAGCTATCAAACAACGAGTTTGGCAAGCTTTGCAAGGTTGGAAGGGTAAATTATTCTCGATTGGGGGAAAGGAGGTGTTTATTAAAAGTGTAGCCCAAGCGATTCCCACCTATTTAATGAGTTGTTTCCGCCTACCTCAAATGGTCTGCAATGATATCCATAGAATGATGGCCAGGTTTTGGTGGGGCACCACTGAGACAAAGAAGAAAATGCATTGGAAGAAATGGGAGTTTTTATGTCTCCCAAAAGAGATGGGAGGTCTAAATTTTCGAGATTTGACTTGTTTTAACAGATCTCTGTTAGCAAAACAGGTGTGGCGACTTTTTAAGCATCCTGATTTATTGGCCTCTAAAGTTATTAAAGGACAATATTCGACCCATGATTCATGGCTAACGGCCCCGCTTAAAGCCAATAGTTCAGTTTTCTGGAAAGGCTTTGTTTGGGCTCGTGAGTTGGTCACATTGGGCATTAGAAAACGTGTTGGGAATGGCAATTCCATTCGTTTTTTCAAGGATCCGTGGGTTCCCAAAGAGTTTTCATTTAAACCTTTAGCTCTCCAACATTCAGAAGTGCAAGACGATATGATGGTGGCTGATTTCATCATTTCGTCGGGAGGTTGGGATATGGAGAAGCTTACAAATGTGGTGATAGAGGAGGATGTTGTATTGATTCAGTCTATACCGATTGCAACTTCACGTAGTAGTGCAGAATCTGTCAATGAACCCATTGCGCAGAAGGGTGTTTCATGTGCGTATACAGATGCTGCCATCAAACCCAACAAGATAGGTGTTGGTGTTGGTGTGGTTGTACAGGACCATGAAGGCAAATTACAAGCTGCAATGTCGAAATTTGAATTTCGATCTTTGTCTCCTTTGGTGGCGGAGGTGCATGCAATTTTTAATGTTGTTCGTTTATTGACCCAATTGCAAACGAATGAGATTATCATATATTCAGATTCCCTCGTTGCAATTAGAATGATAAATCAAGAGCAAGAGACAGAATCAGAGGTGCACCATTGGATTTCACAAATCCAAGACATGAGTCAAAATTTTTCCAAGATGTCCTTTGTCCATGTTCGAAGACTTGGAAACAAGCGGGCCGATGCATTAGCCAAGCAAGCGCTTAGAGATTCACAATCTATGTTGTGGTTGTCTAATTTTCTATCATGGTTATTATCAATGGGAATTAATGCCCATTGCTAA MDCIRTASCSVLINGCPTGQFSPQRGIRQGDSLSPYLFLLVLDSLSSMITGEMRRRRLTGLRPGEFRSTLANILQMPVVDNLGLYLGVPSFFSRKRSDDFRAIKQRVWQALQGWKGKLFSIGGKEVFIKSVAQAIPTYLMSCFRLPQMVCNDIHRMMARFWWGTTETKKKMHWKKWEFLCLPKEMGGLNFRDLTCFNRSLLAKQVWRLFKHPDLLASKVIKGQYSTHDSWLTAPLKANSSVFWKGFVWARELVTLGIRKRVGNGNSIRFFKDPWVPKEFSFKPLALQHSEVQDDMMVADFIISSGGWDMEKLTNVVIEEDVVLIQSIPIATSRSSAESVNEPIAQKGVSCAYTDAAIKPNKIGVGVGVVVQDHEGKLQAAMSKFEFRSLSPLVAEVHAIFNVVRLLTQLQTNEIIIYSDSLVAIRMINQEQETESEVHHWISQIQDMSQNFSKMSFVHVRRLGNKRADALAKQALRDSQSMLWLSNFLSWLLSMGINAHC Homology
BLAST of Lcy04g003860 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 6.6e-29 Identity = 57/152 (37.50%), Postives = 88/152 (57.89%), Query Frame = 0
BLAST of Lcy04g003860 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 2.5e-28 Identity = 83/260 (31.92%), Postives = 125/260 (48.08%), Query Frame = 0
BLAST of Lcy04g003860 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 1.6e-06 Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0
BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A803P9M1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 4.2e-79 Identity = 168/433 (38.80%), Postives = 238/433 (54.97%), Query Frame = 0
BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A803NHG3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76 Identity = 153/362 (42.27%), Postives = 196/362 (54.14%), Query Frame = 0
BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76 Identity = 151/387 (39.02%), Postives = 210/387 (54.26%), Query Frame = 0
BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A803PS58 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 1.8e-74 Identity = 174/565 (30.80%), Postives = 265/565 (46.90%), Query Frame = 0
BLAST of Lcy04g003860 vs. ExPASy TrEMBL
Match: A0A2N9I239 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45945 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 1.6e-73 Identity = 145/349 (41.55%), Postives = 207/349 (59.31%), Query Frame = 0
BLAST of Lcy04g003860 vs. NCBI nr
Match: XP_030479133.1 (uncharacterized protein LOC115696372 [Cannabis sativa]) HSP 1 Score: 281.2 bits (718), Expect = 1.8e-71 Identity = 147/389 (37.79%), Postives = 206/389 (52.96%), Query Frame = 0
BLAST of Lcy04g003860 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa]) HSP 1 Score: 279.3 bits (713), Expect = 6.7e-71 Identity = 147/389 (37.79%), Postives = 203/389 (52.19%), Query Frame = 0
BLAST of Lcy04g003860 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa]) HSP 1 Score: 67.8 bits (164), Expect = 3.1e-07 Identity = 43/144 (29.86%), Postives = 72/144 (50.00%), Query Frame = 0
HSP 2 Score: 279.3 bits (713), Expect = 6.7e-71 Identity = 139/368 (37.77%), Postives = 205/368 (55.71%), Query Frame = 0
BLAST of Lcy04g003860 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis]) HSP 1 Score: 62.4 bits (150), Expect = 1.3e-05 Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 0
HSP 2 Score: 279.3 bits (713), Expect = 6.7e-71 Identity = 147/416 (35.34%), Postives = 215/416 (51.68%), Query Frame = 0
BLAST of Lcy04g003860 vs. NCBI nr
Match: AFP55557.1 (non-ltr retroelement reverse transcriptase [Rosa rugosa]) HSP 1 Score: 276.9 bits (707), Expect = 3.3e-70 Identity = 141/392 (35.97%), Postives = 213/392 (54.34%), Query Frame = 0
BLAST of Lcy04g003860 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 137.9 bits (346), Expect = 2.2e-32 Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = 0
BLAST of Lcy04g003860 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 130.2 bits (326), Expect = 4.7e-30 Identity = 57/152 (37.50%), Postives = 88/152 (57.89%), Query Frame = 0
BLAST of Lcy04g003860 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) ) HSP 1 Score: 55.8 bits (133), Expect = 1.1e-07 Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0
BLAST of Lcy04g003860 vs. TAIR 10
Match: AT3G25720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 55.1 bits (131), Expect = 1.9e-07 Identity = 38/115 (33.04%), Postives = 51/115 (44.35%), Query Frame = 0
The following BLAST results are available for this feature:
Pages
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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