Lcy04g003810 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g003810
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr04: 27033777 .. 27034169 (-)
RNA-Seq Expression	Lcy04g003810
Synteny	Lcy04g003810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCATGGAGGCGTTAGCTATATGGGAAGGCCTCACCTGCATTTACGGCGCTGTCGGCGAGAATCATTCGCTCCTGATTGTAGAATCGGATGCAGAAAATGTTATCAATCTGCTTACTGGAAAAGGCTTGGACCTCACGAAGATTAAGAACATCGTGGAAGCCATTGATTCCCTTTCATTGAAGTTGGGCAATGTTGAATTCTGCTATTGCCCTAGAAATCAAAACACAGTAGCCCACTGTGTAGCTTGTTTTGCATCTAGTTTTTGTATTTTCGGGGATCAGGGGCTGTCTCTCTCGCAGGGAGATGGGCATTCCTTTTGGACCCCTGCTTTCCCCCTCTGGTTCTCCTCCCTGTTTTTGGAGGGTAGTTGTAACGCTTTTCTTTAA

mRNA sequence

ATGGATTCCATGGAGGCGTTAGCTATATGGGAAGGCCTCACCTGCATTTACGGCGCTGTCGGCGAGAATCATTCGCTCCTGATTGTAGAATCGGATGCAGAAAATGTTATCAATCTGCTTACTGGAAAAGGCTTGGACCTCACGAAGATTAAGAACATCGTGGAAGCCATTGATTCCCTTTCATTGAAGTTGGGCAATGTTGAATTCTGCTATTGCCCTAGAAATCAAAACACAGTAGCCCACTGTGTAGCTTGTTTTGCATCTAGTTTTTGTATTTTCGGGGATCAGGGGCTGTCTCTCTCGCAGGGAGATGGGCATTCCTTTTGGACCCCTGCTTTCCCCCTCTGGTTCTCCTCCCTGTTTTTGGAGGGTAGTTGTAACGCTTTTCTTTAA

Coding sequence (CDS)

ATGGATTCCATGGAGGCGTTAGCTATATGGGAAGGCCTCACCTGCATTTACGGCGCTGTCGGCGAGAATCATTCGCTCCTGATTGTAGAATCGGATGCAGAAAATGTTATCAATCTGCTTACTGGAAAAGGCTTGGACCTCACGAAGATTAAGAACATCGTGGAAGCCATTGATTCCCTTTCATTGAAGTTGGGCAATGTTGAATTCTGCTATTGCCCTAGAAATCAAAACACAGTAGCCCACTGTGTAGCTTGTTTTGCATCTAGTTTTTGTATTTTCGGGGATCAGGGGCTGTCTCTCTCGCAGGGAGATGGGCATTCCTTTTGGACCCCTGCTTTCCCCCTCTGGTTCTCCTCCCTGTTTTTGGAGGGTAGTTGTAACGCTTTTCTTTAA

Protein sequence

MDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLKLGNVEFCYCPRNQNTVAHCVACFASSFCIFGDQGLSLSQGDGHSFWTPAFPLWFSSLFLEGSCNAFL

Homology

[Close]

BLAST of Lcy04g003810 vs. ExPASy TrEMBL
Match: A0A5C7HH69 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_017431 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 2   DSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLS 61
           ++ E LAI +G   ++ A+ EN + +IVESD  N INL  G  L   ++ NI + I   +
Sbjct: 89  ETAETLAILDG---VHLAISENLNPVIVESDTVNAINLCLGNSLSRCEVDNIAQVIHDFN 148

Query: 62  LK-LGNVEFCYCPRNQNTVAHCVACFASSFCIFGDQGLSLSQGDGHS-FWTPAFPLWFSS 121
            +   N+  C+ PR+ N VAH VA +                G G S FW  +FP W   
Sbjct: 149 RESTNNISLCFSPRSCNLVAHGVARW--------------PLGSGSSIFWITSFPYWLCK 198

Query: 122 LFLEGSC 127
           L  +  C
Sbjct: 209 LIRDDGC 198

[Close]

BLAST of Lcy04g003810 vs. ExPASy TrEMBL
Match: A0A5C7HRR6 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_014243 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.8e-05
Identity = 39/125 (31.20%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 5   EALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLKL 64
           EALAI EGL        ++   ++VES+A NV+N+  G  +  T+  N+V+ I       
Sbjct: 89  EALAILEGLKL---TDSDSKCPVLVESNALNVVNICRGLSISRTEADNVVQDIKDFLDNH 148

Query: 65  GNVEFCYCPRNQNTVAHCVACFASSFCIFGDQGLSLSQGDGHSFWTPAFPLWFSSLFLEG 124
           GN E  + PRN N   H VA +A S    G + +     +    W+  FP W  +L  + 
Sbjct: 149 GNFEVQFAPRNCNKATHEVAKWALS----GFRSVDSFDVNNSVLWSSFFPGWLCTLIKDD 206

Query: 125 SCNAF 130
             + F
Sbjct: 209 VVSTF 206

[Close]

BLAST of Lcy04g003810 vs. NCBI nr
Match: TXG56118.1 (hypothetical protein EZV62_017431 [Acer yangbiense])

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-07
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 2   DSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLS 61
           ++ E LAI +G   ++ A+ EN + +IVESD  N INL  G  L   ++ NI + I   +
Sbjct: 89  ETAETLAILDG---VHLAISENLNPVIVESDTVNAINLCLGNSLSRCEVDNIAQVIHDFN 148

Query: 62  LK-LGNVEFCYCPRNQNTVAHCVACFASSFCIFGDQGLSLSQGDGHS-FWTPAFPLWFSS 121
            +   N+  C+ PR+ N VAH VA +                G G S FW  +FP W   
Sbjct: 149 RESTNNISLCFSPRSCNLVAHGVARW--------------PLGSGSSIFWITSFPYWLCK 198

Query: 122 LFLEGSC 127
           L  +  C
Sbjct: 209 LIRDDGC 198

[Close]

BLAST of Lcy04g003810 vs. NCBI nr
Match: TXG59670.1 (hypothetical protein EZV62_014243 [Acer yangbiense])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 39/125 (31.20%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 5   EALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLKL 64
           EALAI EGL        ++   ++VES+A NV+N+  G  +  T+  N+V+ I       
Sbjct: 89  EALAILEGLKL---TDSDSKCPVLVESNALNVVNICRGLSISRTEADNVVQDIKDFLDNH 148

Query: 65  GNVEFCYCPRNQNTVAHCVACFASSFCIFGDQGLSLSQGDGHSFWTPAFPLWFSSLFLEG 124
           GN E  + PRN N   H VA +A S    G + +     +    W+  FP W  +L  + 
Sbjct: 149 GNFEVQFAPRNCNKATHEVAKWALS----GFRSVDSFDVNNSVLWSSFFPGWLCTLIKDD 206

Query: 125 SCNAF 130
             + F
Sbjct: 209 VVSTF 206

The following BLAST results are available for this feature:

BLAST of Lcy04g003810 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g003810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7HH69	1.5e-07	33.07	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_017431 ...	[more]
A0A5C7HRR6	6.8e-05	31.20	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_014243 ...	[more]

BLAST of Lcy04g003810 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG56118.1	3.0e-07	33.07	hypothetical protein EZV62_017431 [Acer yangbiense]	[more]
TXG59670.1	1.4e-04	31.20	hypothetical protein EZV62_014243 [Acer yangbiense]	[more]

BLAST of Lcy04g003810 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..90 e-value: 9.0E-8 score: 34.1
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 5..85 e-value: 1.4E-11 score: 44.3
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 4..84 e-value: 4.31725E-13 score: 59.25
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g003810.1	Lcy04g003810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity